RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 RSPH4AQ5TD94 716 aa12.19□□□□□ -0.46
GGA3-223ENST00000621870 IGF1RP08069 1367 aa12.19□□□□□ -0.46
GGA3-223ENST00000621870 PAK3O75914 559 aaPredicted RBP12.19□□□□□ -0.46
GGA3-223ENST00000621870 UPF2Q9HAU5 1272 aaKnown RBP12.18□□□□□ -0.46
GGA3-223ENST00000621870 MYH16Q9H6N6 1097 aa12.17□□□□□ -0.46
GGA3-223ENST00000621870 NUTM2FA1L443 756 aa12.17□□□□□ -0.46
GGA3-223ENST00000621870 EID1Q9Y6B2 187 aa12.16□□□□□ -0.46
GGA3-223ENST00000621870 RAB3GAP2Q9H2M9 1393 aa12.16□□□□□ -0.46
GGA3-223ENST00000621870 CCDC18Q5T9S5 1454 aa12.15□□□□□ -0.46
GGA3-223ENST00000621870 NESP48681 1621 aa12.14□□□□□ -0.47
GGA3-223ENST00000621870 MORC1Q86VD1 984 aa12.14□□□□□ -0.47
GGA3-223ENST00000621870 HSPA5P11021 654 aaKnown RBP12.13□□□□□ -0.47
GGA3-223ENST00000621870 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
GGA3-223ENST00000621870 NPHP1O15259 732 aa12.12□□□□□ -0.47
GGA3-223ENST00000621870 L3MBTL2Q969R5 705 aa12.11□□□□□ -0.47
GGA3-223ENST00000621870 HDGFL2Q7Z4V5 671 aaPredicted RBP12.11□□□□□ -0.47
GGA3-223ENST00000621870 FRAT1Q92837 279 aaPredicted RBP12.1□□□□□ -0.47
GGA3-223ENST00000621870 TRAK1Q9UPV9 953 aa12.09□□□□□ -0.47
GGA3-223ENST00000621870 FTSJ3Q8IY81 847 aaKnown RBP12.09□□□□□ -0.47
GGA3-223ENST00000621870 CSB-PGBD3P0DP91 1061 aa12.08□□□□□ -0.47
GGA3-223ENST00000621870 ROCK2O75116 1388 aaKnown RBP12.08□□□□□ -0.48
GGA3-223ENST00000621870 NGDNQ8NEJ9 315 aaKnown RBP12.08□□□□□ -0.48
GGA3-223ENST00000621870 ZNF644Q9H582 1327 aaPredicted RBP12.07□□□□□ -0.48
GGA3-223ENST00000621870 BICRAQ9NZM4 1560 aa12.06□□□□□ -0.48
GGA3-223ENST00000621870 SUPT16HQ9Y5B9 1047 aaKnown RBP12.06□□□□□ -0.48
GGA3-223ENST00000621870 CCDC9Q9Y3X0 531 aaKnown RBP12.05□□□□□ -0.48
GGA3-223ENST00000621870 U2AF1L5P0DN76 240 aaPredicted RBP12.04□□□□□ -0.48
GGA3-223ENST00000621870 U2AF1Q01081 240 aaKnown RBP eCLIP12.04□□□□□ -0.48
GGA3-223ENST00000621870 AFAP1Q8N556 730 aa12.03□□□□□ -0.48
GGA3-223ENST00000621870 PNNQ9H307 717 aaKnown RBP12.02□□□□□ -0.49
GGA3-223ENST00000621870 CFTRP13569 1480 aa12.01□□□□□ -0.49
GGA3-223ENST00000621870 CC2D2AQ9P2K1 1620 aa12.01□□□□□ -0.49
GGA3-223ENST00000621870 RTF1Q92541 710 aaKnown RBP12.01□□□□□ -0.49
GGA3-223ENST00000621870 GRIN2BQ13224 1484 aa12□□□□□ -0.49
GGA3-223ENST00000621870 ZNF330Q9Y3S2 320 aaPredicted RBP12□□□□□ -0.49
GGA3-223ENST00000621870 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12□□□□□ -0.49
GGA3-223ENST00000621870 LTV1Q96GA3 475 aaPredicted RBP12□□□□□ -0.49
GGA3-223ENST00000621870 TERF2IPQ9NYB0 399 aa12□□□□□ -0.49
GGA3-223ENST00000621870 VGFO15240 615 aaPredicted RBP12□□□□□ -0.49
GGA3-223ENST00000621870 AEBP2Q6ZN18 517 aaPredicted RBP11.99□□□□□ -0.49
GGA3-223ENST00000621870 CCDC144AA2RUR9 1427 aa11.98□□□□□ -0.49
GGA3-223ENST00000621870 ST20-MTHFSA0A0A6YYL1 179 aa11.98□□□□□ -0.49
GGA3-223ENST00000621870 PRG4Q92954 1404 aaPredicted RBP11.97□□□□□ -0.49
GGA3-223ENST00000621870 OS9Q13438 667 aaPredicted RBP11.96□□□□□ -0.49
GGA3-223ENST00000621870 KTN1Q86UP2 1357 aaKnown RBP11.96□□□□□ -0.5
GGA3-223ENST00000621870 MINK1Q8N4C8 1332 aaPredicted RBP11.95□□□□□ -0.5
GGA3-223ENST00000621870 AMPHP49418 695 aa11.95□□□□□ -0.5
GGA3-223ENST00000621870 RGS3P49796 1198 aa11.95□□□□□ -0.5
GGA3-223ENST00000621870 MRC2Q9UBG0 1479 aa11.95□□□□□ -0.5
GGA3-223ENST00000621870 EIF3AQ14152 1382 aaKnown RBP11.93□□□□□ -0.5
GGA3-223ENST00000621870 KIF15Q9NS87 1388 aa11.93□□□□□ -0.5
GGA3-223ENST00000621870 UNC13AQ9UPW8 1703 aa11.92□□□□□ -0.5
GGA3-223ENST00000621870 TOPBP1Q92547 1522 aa11.91□□□□□ -0.5
GGA3-223ENST00000621870 MYOM3Q5VTT5 1437 aa11.91□□□□□ -0.5
GGA3-223ENST00000621870 POLA1P09884 1462 aaPredicted RBP11.91□□□□□ -0.5
GGA3-223ENST00000621870 RAPGEF3O95398 923 aa11.9□□□□□ -0.5
GGA3-223ENST00000621870 GOLGA2Q08379 1002 aa11.9□□□□□ -0.5
GGA3-223ENST00000621870 IFT140Q96RY7 1462 aa11.89□□□□□ -0.51
GGA3-223ENST00000621870 TAOK2Q9UL54 1235 aa11.89□□□□□ -0.51
GGA3-223ENST00000621870 MS4A1P11836 297 aa11.89□□□□□ -0.51
GGA3-223ENST00000621870 ANP32BQ92688 251 aaKnown RBP11.88□□□□□ -0.51
GGA3-223ENST00000621870 APBB1O00213 710 aa11.88□□□□□ -0.51
GGA3-223ENST00000621870 RALBP1Q15311 655 aa11.88□□□□□ -0.51
GGA3-223ENST00000621870 CHMP4BQ9H444 224 aaKnown RBP11.87□□□□□ -0.51
GGA3-223ENST00000621870 PANK3Q9H999 370 aa11.87□□□□□ -0.51
GGA3-223ENST00000621870 PHLDB1Q86UU1 1377 aa11.87□□□□□ -0.51
GGA3-223ENST00000621870 CCDC146Q8IYE0 955 aa11.87□□□□□ -0.51
GGA3-223ENST00000621870 B4GALNT3Q6L9W6 998 aa11.86□□□□□ -0.51
GGA3-223ENST00000621870 FGD6Q6ZV73 1430 aa11.86□□□□□ -0.51
GGA3-223ENST00000621870 SNAPC4Q5SXM2 1469 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 CCER2I3L3R5 266 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 TMEM132EQ6IEE7 984 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 NLRP13Q86W25 1043 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 EVC2Q86UK5 1308 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 SYNJ2O15056 1496 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 NBR1Q14596 966 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 PRDM2Q13029 1718 aa11.85□□□□□ -0.51
GGA3-223ENST00000621870 DHX57Q6P158 1386 aaKnown RBP11.85□□□□□ -0.51
GGA3-223ENST00000621870 UACAQ9BZF9 1416 aa11.84□□□□□ -0.51
GGA3-223ENST00000621870 HMGXB3Q12766 1538 aa11.84□□□□□ -0.51
GGA3-223ENST00000621870 KCNJ4P48050 445 aa11.84□□□□□ -0.51
GGA3-223ENST00000621870 COG3Q96JB2 828 aa11.84□□□□□ -0.51
GGA3-223ENST00000621870 ANKRD50Q9ULJ7 1429 aa11.84□□□□□ -0.51
GGA3-223ENST00000621870 PSME1Q06323 249 aa11.83□□□□□ -0.51
GGA3-223ENST00000621870 CASC1Q6TDU7 716 aa11.83□□□□□ -0.51
GGA3-223ENST00000621870 EVA1CP58658 441 aa11.83□□□□□ -0.52
GGA3-223ENST00000621870 CALD1Q05682 793 aaKnown RBP11.83□□□□□ -0.52
GGA3-223ENST00000621870 SYNJ1O43426 1573 aa11.83□□□□□ -0.52
GGA3-223ENST00000621870 SCAPERQ9BY12 1400 aa11.83□□□□□ -0.52
GGA3-223ENST00000621870 FGD1P98174 961 aa11.83□□□□□ -0.52
GGA3-223ENST00000621870 TXNDC2Q86VQ3 553 aa11.83□□□□□ -0.52
GGA3-223ENST00000621870 STK31Q9BXU1 1019 aa11.83□□□□□ -0.52
GGA3-223ENST00000621870 RRP7AQ9Y3A4 280 aaKnown RBP11.83□□□□□ -0.52
GGA3-223ENST00000621870 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.82□□□□□ -0.52
GGA3-223ENST00000621870 IPO8O15397 1037 aaKnown RBP11.81□□□□□ -0.52
GGA3-223ENST00000621870 TPRNQ4KMQ1 711 aa11.81□□□□□ -0.52
GGA3-223ENST00000621870 CLUAP1Q96AJ1 413 aa11.81□□□□□ -0.52
GGA3-223ENST00000621870 ELL2O00472 640 aaPredicted RBP11.81□□□□□ -0.52
GGA3-223ENST00000621870 ANP32EQ9BTT0 268 aa11.81□□□□□ -0.52
GGA3-223ENST00000621870 PPP4R2Q9NY27 417 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms