RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CALD1Q05682 793 aaKnown RBP6.27□□□□□ -1.41
VPS13D-213ENST00000613099 MRE11P49959 708 aa6.27□□□□□ -1.41
VPS13D-213ENST00000613099 HSCBQ8IWL3 235 aa6.27□□□□□ -1.41
VPS13D-213ENST00000613099 RSPH4AQ5TD94 716 aa6.26□□□□□ -1.41
VPS13D-213ENST00000613099 ARID3AQ99856 593 aa6.26□□□□□ -1.41
VPS13D-213ENST00000613099 HTATSF1O43719 755 aaKnown RBP6.26□□□□□ -1.41
VPS13D-213ENST00000613099 HMGN5P82970 282 aaKnown RBP6.26□□□□□ -1.41
VPS13D-213ENST00000613099 GZF1Q9H116 711 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-213ENST00000613099 SYAP1Q96A49 352 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-213ENST00000613099 WWC1Q8IX03 1113 aa6.25□□□□□ -1.41
VPS13D-213ENST00000613099 PABPN1Q86U42 306 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS13D-213ENST00000613099 FRAT1Q92837 279 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-213ENST00000613099 PHF14O94880 888 aa6.24□□□□□ -1.41
VPS13D-213ENST00000613099 CHMP4BQ9H444 224 aaKnown RBP6.24□□□□□ -1.41
VPS13D-213ENST00000613099 HSP90AB1P08238 724 aaKnown RBP6.23□□□□□ -1.41
VPS13D-213ENST00000613099 KAT6BQ8WYB5 2073 aa6.23□□□□□ -1.41
VPS13D-213ENST00000613099 BCL11BQ9C0K0 894 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-213ENST00000613099 EIF4G1Q04637 1599 aaKnown RBP6.23□□□□□ -1.41
VPS13D-213ENST00000613099 FAM50AQ14320 339 aaKnown RBP6.23□□□□□ -1.41
VPS13D-213ENST00000613099 CC2D1BQ5T0F9 858 aaKnown RBP6.23□□□□□ -1.41
VPS13D-213ENST00000613099 BCCIPQ9P287 314 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13D-213ENST00000613099 SENP3-EIF4A1A0A087X0R7 540 aa6.22□□□□□ -1.41
VPS13D-213ENST00000613099 NFKBIBQ15653 356 aa6.22□□□□□ -1.41
VPS13D-213ENST00000613099 DNAJC2Q99543 621 aaKnown RBP6.22□□□□□ -1.41
VPS13D-213ENST00000613099 PAXIP1Q6ZW49 1069 aaPredicted RBP6.22□□□□□ -1.41
VPS13D-213ENST00000613099 PDE4AP27815 886 aa6.22□□□□□ -1.41
VPS13D-213ENST00000613099 FTSJ3Q8IY81 847 aaKnown RBP6.22□□□□□ -1.41
VPS13D-213ENST00000613099 GTPBP4Q9BZE4 634 aaKnown RBP6.22□□□□□ -1.41
VPS13D-213ENST00000613099 SMARCA4P51532 1647 aa6.22□□□□□ -1.41
VPS13D-213ENST00000613099 DEF6Q9H4E7 631 aa6.22□□□□□ -1.41
VPS13D-213ENST00000613099 CC2D2AQ9P2K1 1620 aa6.22□□□□□ -1.41
VPS13D-213ENST00000613099 CASC1Q6TDU7 716 aa6.21□□□□□ -1.41
VPS13D-213ENST00000613099 TONSLQ96HA7 1378 aa6.21□□□□□ -1.42
VPS13D-213ENST00000613099 DIAPH3Q9NSV4 1193 aa6.21□□□□□ -1.42
VPS13D-213ENST00000613099 TULP1O00294 542 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-213ENST00000613099 ZRSR1Q15695 479 aaKnown RBP6.21□□□□□ -1.42
VPS13D-213ENST00000613099 GOLGA3Q08378 1498 aa6.21□□□□□ -1.42
VPS13D-213ENST00000613099 KIF3AQ9Y496 699 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 NGEFQ8N5V2 710 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 PDCL2Q8N4E4 241 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 IPO4Q8TEX9 1081 aaKnown RBP6.2□□□□□ -1.42
VPS13D-213ENST00000613099 SCAPERQ9BY12 1400 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 DRC7Q8IY82 874 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 MSH5O43196 834 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 CALCOCO1Q9P1Z2 691 aa6.2□□□□□ -1.42
VPS13D-213ENST00000613099 ESPNB1AK53 854 aa6.19□□□□□ -1.42
VPS13D-213ENST00000613099 RBM28Q9NW13 759 aaKnown RBP6.19□□□□□ -1.42
VPS13D-213ENST00000613099 CDCA8Q53HL2 280 aa6.19□□□□□ -1.42
VPS13D-213ENST00000613099 KIF21AQ7Z4S6 1674 aa6.19□□□□□ -1.42
VPS13D-213ENST00000613099 CECR2Q9BXF3 1484 aa6.19□□□□□ -1.42
VPS13D-213ENST00000613099 CCDC9Q9Y3X0 531 aaKnown RBP6.19□□□□□ -1.42
VPS13D-213ENST00000613099 SSR1P43307 286 aaKnown RBP6.19□□□□□ -1.42
VPS13D-213ENST00000613099 CCDC39Q9UFE4 941 aa6.19□□□□□ -1.42
VPS13D-213ENST00000613099 LETM1O95202 739 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-213ENST00000613099 KIAA1211Q6ZU35 1233 aa6.18□□□□□ -1.42
VPS13D-213ENST00000613099 TIGD1Q96MW7 591 aa6.18□□□□□ -1.42
VPS13D-213ENST00000613099 BICRAQ9NZM4 1560 aa6.18□□□□□ -1.42
VPS13D-213ENST00000613099 SMAP1Q8IYB5 467 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-213ENST00000613099 STK11IPQ8N1F8 1099 aa6.18□□□□□ -1.42
VPS13D-213ENST00000613099 TPM3P06753 285 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 CCDC173Q0VFZ6 552 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 KIF20AO95235 890 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 PDS5BQ9NTI5 1447 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 USP8P40818 1118 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 R3HCC1Q9Y3T6 440 aaKnown RBP6.17□□□□□ -1.42
VPS13D-213ENST00000613099 CTTNBP2Q8WZ74 1663 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 EIF4G2P78344 907 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS13D-213ENST00000613099 HIRIP3Q9BW71 556 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-213ENST00000613099 WDR43Q15061 677 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS13D-213ENST00000613099 DYNC1I1O14576 645 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 RGS3P49796 1198 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 CTR9Q6PD62 1173 aa6.17□□□□□ -1.42
VPS13D-213ENST00000613099 DHX37Q8IY37 1157 aaKnown RBP6.17□□□□□ -1.42
VPS13D-213ENST00000613099 SLC4A1APQ9BWU0 796 aaKnown RBP6.16□□□□□ -1.42
VPS13D-213ENST00000613099 FAM161AQ3B820 660 aa6.16□□□□□ -1.42
VPS13D-213ENST00000613099 HMGXB3Q12766 1538 aa6.16□□□□□ -1.42
VPS13D-213ENST00000613099 NASPP49321 788 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-213ENST00000613099 SLKQ9H2G2 1235 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-213ENST00000613099 AK7Q96M32 723 aa6.16□□□□□ -1.42
VPS13D-213ENST00000613099 MNS1Q8NEH6 495 aa6.15□□□□□ -1.42
VPS13D-213ENST00000613099 PLCB2Q00722 1185 aa6.15□□□□□ -1.42
VPS13D-213ENST00000613099 PAK3O75914 559 aaPredicted RBP6.15□□□□□ -1.42
VPS13D-213ENST00000613099 CLIP1P30622 1438 aa6.15□□□□□ -1.42
VPS13D-213ENST00000613099 MCM5P33992 734 aa6.15□□□□□ -1.43
VPS13D-213ENST00000613099 RCAN3Q9UKA8 241 aa6.15□□□□□ -1.43
VPS13D-213ENST00000613099 AAMPQ13685 434 aa6.15□□□□□ -1.43
VPS13D-213ENST00000613099 PLCD4Q9BRC7 762 aa6.15□□□□□ -1.43
VPS13D-213ENST00000613099 RDXP35241 583 aaKnown RBP6.15□□□□□ -1.43
VPS13D-213ENST00000613099 NEFHP12036 1026 aa6.14□□□□□ -1.43
VPS13D-213ENST00000613099 ZHX1Q9UKY1 873 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-213ENST00000613099 KCNJ4P48050 445 aa6.14□□□□□ -1.43
VPS13D-213ENST00000613099 GOLGA6L4A6NEF3 574 aa6.14□□□□□ -1.43
VPS13D-213ENST00000613099 CLCN1P35523 988 aa6.14□□□□□ -1.43
VPS13D-213ENST00000613099 ZSCAN30Q86W11 494 aa6.13□□□□□ -1.43
VPS13D-213ENST00000613099 ARGLU1Q9NWB6 273 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-213ENST00000613099 SETD5Q9C0A6 1442 aa6.13□□□□□ -1.43
VPS13D-213ENST00000613099 GTF2A1P52655 376 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-213ENST00000613099 PES1O00541 588 aaKnown RBP6.13□□□□□ -1.43
VPS13D-213ENST00000613099 ZBTB7CA1YPR0 619 aa6.13□□□□□ -1.43
VPS13D-213ENST00000613099 PDE3BQ13370 1112 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms