RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 KDM5BQ9UGL1 1544 aa19.24■□□□□ 0.67
COL6A1-207ENST00000612273 EPRSP07814 1512 aaKnown RBP19.23■□□□□ 0.67
COL6A1-207ENST00000612273 UGGT2Q9NYU1 1516 aa19.23■□□□□ 0.67
COL6A1-207ENST00000612273 CNTLNQ9NXG0 1405 aa19.22■□□□□ 0.67
COL6A1-207ENST00000612273 PKD2Q13563 968 aa19.2■□□□□ 0.66
COL6A1-207ENST00000612273 PPP4R2Q9NY27 417 aa19.2■□□□□ 0.66
COL6A1-207ENST00000612273 THOC2Q8NI27 1593 aaKnown RBP19.19■□□□□ 0.66
COL6A1-207ENST00000612273 SAMD9Q5K651 1589 aa19.18■□□□□ 0.66
COL6A1-207ENST00000612273 ANKRD30BQ9BXX2 1392 aa19.16■□□□□ 0.66
COL6A1-207ENST00000612273 LAMC3Q9Y6N6 1575 aa19.16■□□□□ 0.66
COL6A1-207ENST00000612273 ABCA5Q8WWZ7 1642 aa19.14■□□□□ 0.66
COL6A1-207ENST00000612273 CHMP7Q8WUX9 453 aaPredicted RBP19.14■□□□□ 0.65
COL6A1-207ENST00000612273 PRG4Q92954 1404 aaPredicted RBP19.13■□□□□ 0.65
COL6A1-207ENST00000612273 ABCC5O15440 1437 aa19.13■□□□□ 0.65
COL6A1-207ENST00000612273 DAPK1P53355 1430 aa19.12■□□□□ 0.65
COL6A1-207ENST00000612273 ZNF608Q9ULD9 1512 aaPredicted RBP19.12■□□□□ 0.65
COL6A1-207ENST00000612273 TMC1Q8TDI8 760 aa19.12■□□□□ 0.65
COL6A1-207ENST00000612273 BCL11AQ9H165 835 aa19.12■□□□□ 0.65
COL6A1-207ENST00000612273 NCOA1Q15788 1441 aa19.11■□□□□ 0.65
COL6A1-207ENST00000612273 AKNAQ7Z591 1439 aa19.11■□□□□ 0.65
COL6A1-207ENST00000612273 CARD11Q9BXL7 1154 aa19.1■□□□□ 0.65
COL6A1-207ENST00000612273 RGL3Q3MIN7 710 aa19.1■□□□□ 0.65
COL6A1-207ENST00000612273 ZBED9Q6R2W3 1325 aa19.1■□□□□ 0.65
COL6A1-207ENST00000612273 IQGAP2Q13576 1575 aa19.09■□□□□ 0.65
COL6A1-207ENST00000612273 NBR1Q14596 966 aa19.08■□□□□ 0.64
COL6A1-207ENST00000612273 CCDC136Q96JN2 1154 aa19.08■□□□□ 0.64
COL6A1-207ENST00000612273 MIA2Q96PC5 1412 aa19.07■□□□□ 0.64
COL6A1-207ENST00000612273 HECW1Q76N89 1606 aa19.07■□□□□ 0.64
COL6A1-207ENST00000612273 DCAF11Q8TEB1 546 aa19.07■□□□□ 0.64
COL6A1-207ENST00000612273 USP47Q96K76 1375 aa19.07■□□□□ 0.64
COL6A1-207ENST00000612273 TCOF1Q13428 1488 aaKnown RBP19.07■□□□□ 0.64
COL6A1-207ENST00000612273 KIF21AQ7Z4S6 1674 aa19.06■□□□□ 0.64
COL6A1-207ENST00000612273 ARHGEF11O15085 1522 aa19.06■□□□□ 0.64
COL6A1-207ENST00000612273 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.05■□□□□ 0.644e-7■■■■□ 22.7
COL6A1-207ENST00000612273 RPRD2Q5VT52 1461 aaKnown RBP19.05■□□□□ 0.64
COL6A1-207ENST00000612273 ST20-MTHFSA0A0A6YYL1 179 aa19.05■□□□□ 0.64
COL6A1-207ENST00000612273 HNRNPMP52272 730 aaKnown RBP eCLIP19.04■□□□□ 0.64
COL6A1-207ENST00000612273 NUP155O75694 1391 aa19.03■□□□□ 0.64
COL6A1-207ENST00000612273 PLB1Q6P1J6 1458 aa19.01■□□□□ 0.63
COL6A1-207ENST00000612273 FANCIQ9NVI1 1328 aa19■□□□□ 0.63
COL6A1-207ENST00000612273 PLEKHD1A6NEE1 506 aa18.99■□□□□ 0.63
COL6A1-207ENST00000612273 NUP153P49790 1475 aaKnown RBP18.99■□□□□ 0.63
COL6A1-207ENST00000612273 TSPY4P0CV99 314 aa18.99■□□□□ 0.63
COL6A1-207ENST00000612273 TSPY10P0CW01 314 aa18.99■□□□□ 0.63
COL6A1-207ENST00000612273 NPM2Q86SE8 214 aaKnown RBP18.99■□□□□ 0.63
COL6A1-207ENST00000612273 TARBP1Q13395 1621 aaKnown RBP18.99■□□□□ 0.63
COL6A1-207ENST00000612273 TEX14Q8IWB6 1497 aa18.99■□□□□ 0.63
COL6A1-207ENST00000612273 WDR62O43379 1518 aa18.99■□□□□ 0.63
COL6A1-207ENST00000612273 JPH4Q96JJ6 628 aa18.97■□□□□ 0.63
COL6A1-207ENST00000612273 NUDCQ9Y266 331 aa18.97■□□□□ 0.63
COL6A1-207ENST00000612273 SPATA31E1Q6ZUB1 1445 aa18.96■□□□□ 0.63
COL6A1-207ENST00000612273 PAK3O75914 559 aaPredicted RBP18.96■□□□□ 0.63
COL6A1-207ENST00000612273 ROCK1Q13464 1354 aa18.95■□□□□ 0.62
COL6A1-207ENST00000612273 GCC2Q8IWJ2 1684 aa18.95■□□□□ 0.62
COL6A1-207ENST00000612273 CC2D1BQ5T0F9 858 aaKnown RBP18.94■□□□□ 0.62
COL6A1-207ENST00000612273 PNISRQ8TF01 805 aaKnown RBP18.93■□□□□ 0.62
COL6A1-207ENST00000612273 DISP1Q96F81 1524 aa18.93■□□□□ 0.62
COL6A1-207ENST00000612273 DHX29Q7Z478 1369 aaKnown RBP18.93■□□□□ 0.62
COL6A1-207ENST00000612273 PZPP20742 1482 aa18.92■□□□□ 0.62
COL6A1-207ENST00000612273 ERICH6BQ5W0A0 696 aa18.92■□□□□ 0.62
COL6A1-207ENST00000612273 ANKRD30AQ9BXX3 1397 aa18.92■□□□□ 0.62
COL6A1-207ENST00000612273 ANKRD50Q9ULJ7 1429 aa18.91■□□□□ 0.62
COL6A1-207ENST00000612273 CAMSAP2Q08AD1 1489 aa18.91■□□□□ 0.62
COL6A1-207ENST00000612273 ADAMTS12P58397 1594 aa18.91■□□□□ 0.62
COL6A1-207ENST00000612273 NBPF1Q3BBV0 1214 aa18.9■□□□□ 0.62
COL6A1-207ENST00000612273 KIAA1107Q9UPP5 1409 aa18.9■□□□□ 0.62
COL6A1-207ENST00000612273 KIAA0586Q9BVV6 1533 aa18.89■□□□□ 0.61
COL6A1-207ENST00000612273 TROQ12816 1431 aaPredicted RBP18.89■□□□□ 0.61
COL6A1-207ENST00000612273 MRC2Q9UBG0 1479 aa18.88■□□□□ 0.61
COL6A1-207ENST00000612273 SKAP1Q86WV1 359 aa18.88■□□□□ 0.61
COL6A1-207ENST00000612273 PBRM1Q86U86 1689 aa18.87■□□□□ 0.61
COL6A1-207ENST00000612273 EXOC6Q8TAG9 804 aa18.87■□□□□ 0.61
COL6A1-207ENST00000612273 PLIN1O60240 522 aa18.87■□□□□ 0.61
COL6A1-207ENST00000612273 GPATCH8Q9UKJ3 1502 aaKnown RBP18.87■□□□□ 0.61
COL6A1-207ENST00000612273 CDCA7LQ96GN5 454 aa18.87■□□□□ 0.61
COL6A1-207ENST00000612273 NOP58Q9Y2X3 529 aaKnown RBP18.86■□□□□ 0.61
COL6A1-207ENST00000612273 ROCK2O75116 1388 aaKnown RBP18.85■□□□□ 0.61
COL6A1-207ENST00000612273 DNMT1P26358 1616 aaKnown RBP18.84■□□□□ 0.61
COL6A1-207ENST00000612273 ANP32AP39687 249 aaKnown RBP18.83■□□□□ 0.61
COL6A1-207ENST00000612273 GRIN2AQ12879 1464 aa18.83■□□□□ 0.6
COL6A1-207ENST00000612273 KIAA0556O60303 1618 aa18.82■□□□□ 0.6
COL6A1-207ENST00000612273 ERCC6Q03468 1493 aa18.82■□□□□ 0.6
COL6A1-207ENST00000612273 SMG6Q86US8 1419 aaKnown RBP18.82■□□□□ 0.6
COL6A1-207ENST00000612273 DEKP35659 375 aaKnown RBP18.81■□□□□ 0.6
COL6A1-207ENST00000612273 KIF14Q15058 1648 aa18.81■□□□□ 0.6
COL6A1-207ENST00000612273 KIF15Q9NS87 1388 aa18.8■□□□□ 0.6
COL6A1-207ENST00000612273 BCORL1Q5H9F3 1711 aa18.8■□□□□ 0.6
COL6A1-207ENST00000612273 RAPGEF6Q8TEU7 1601 aa18.8■□□□□ 0.6
COL6A1-207ENST00000612273 RCAN3Q9UKA8 241 aa18.79■□□□□ 0.6
COL6A1-207ENST00000612273 C9orf84Q5VXU9 1444 aa18.78■□□□□ 0.6
COL6A1-207ENST00000612273 IFT140Q96RY7 1462 aa18.78■□□□□ 0.6
COL6A1-207ENST00000612273 MYBBP1AQ9BQG0 1328 aaKnown RBP18.78■□□□□ 0.6
COL6A1-207ENST00000612273 ZBTB47Q9UFB7 747 aaPredicted RBP18.77■□□□□ 0.6
COL6A1-207ENST00000612273 CARMIL2Q6F5E8 1435 aa18.75■□□□□ 0.59
COL6A1-207ENST00000612273 RRP1P56182 461 aaKnown RBP18.75■□□□□ 0.59
COL6A1-207ENST00000612273 LAS1LQ9Y4W2 734 aaKnown RBP18.74■□□□□ 0.59
COL6A1-207ENST00000612273 PANK3Q9H999 370 aa18.74■□□□□ 0.59
COL6A1-207ENST00000612273 RALBP1Q15311 655 aa18.72■□□□□ 0.59
COL6A1-207ENST00000612273 NLRP13Q86W25 1043 aa18.71■□□□□ 0.59
COL6A1-207ENST00000612273 IPO9Q96P70 1041 aaKnown RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms