RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 ARHGEF12Q9NZN5 1544 aa27.15■■□□□ 1.94
SSBP4-211ENST00000601614 SCAPERQ9BY12 1400 aa27.14■■□□□ 1.93
SSBP4-211ENST00000601614 PREX1Q8TCU6 1659 aa27.14■■□□□ 1.93
SSBP4-211ENST00000601614 PLCH2O75038 1416 aa27.11■■□□□ 1.93
SSBP4-211ENST00000601614 STRCQ7RTU9 1775 aa27.09■■□□□ 1.93
SSBP4-211ENST00000601614 ATP10AO60312 1499 aa27.08■■□□□ 1.93
SSBP4-211ENST00000601614 MYO5CQ9NQX4 1742 aa27.07■■□□□ 1.92
SSBP4-211ENST00000601614 EEA1Q15075 1411 aa27.07■■□□□ 1.92
SSBP4-211ENST00000601614 C9orf84Q5VXU9 1444 aa27.06■■□□□ 1.92
SSBP4-211ENST00000601614 CEBPAP49715 358 aaPredicted RBP27.05■■□□□ 1.92
SSBP4-211ENST00000601614 KIF14Q15058 1648 aa27.01■■□□□ 1.92
SSBP4-211ENST00000601614 ILDR2Q71H61 639 aa26.98■■□□□ 1.91
SSBP4-211ENST00000601614 SETD1BQ9UPS6 1966 aaKnown RBP26.97■■□□□ 1.91
SSBP4-211ENST00000601614 KDM5CP41229 1560 aa26.96■■□□□ 1.91
SSBP4-211ENST00000601614 EFCAB2Q5VUJ9 269 aa26.94■■□□□ 1.9
SSBP4-211ENST00000601614 DIP2CQ9Y2E4 1556 aa26.93■■□□□ 1.9
SSBP4-211ENST00000601614 DISP3Q9P2K9 1392 aa26.93■■□□□ 1.9
SSBP4-211ENST00000601614 ZNF518AQ6AHZ1 1483 aa26.93■■□□□ 1.9
SSBP4-211ENST00000601614 LRRIQ1Q96JM4 1722 aa26.92■■□□□ 1.9
SSBP4-211ENST00000601614 C3P01024 1663 aa26.92■■□□□ 1.9
SSBP4-211ENST00000601614 UHRF1BP1Q6BDS2 1440 aa26.91■■□□□ 1.9
SSBP4-211ENST00000601614 AFAP1Q8N556 730 aa26.9■■□□□ 1.9
SSBP4-211ENST00000601614 ABCA6Q8N139 1617 aa26.9■■□□□ 1.9
SSBP4-211ENST00000601614 ARHGAP5Q13017 1502 aa26.89■■□□□ 1.89
SSBP4-211ENST00000601614 ATP1B4Q9UN42 357 aaPredicted RBP26.88■■□□□ 1.89
SSBP4-211ENST00000601614 REREQ9P2R6 1566 aa26.88■■□□□ 1.89
SSBP4-211ENST00000601614 CDC42BPBQ9Y5S2 1711 aa26.87■■□□□ 1.89
SSBP4-211ENST00000601614 ARHGAP35Q9NRY4 1499 aa26.87■■□□□ 1.89
SSBP4-211ENST00000601614 FMN1Q68DA7 1419 aa26.86■■□□□ 1.89
SSBP4-211ENST00000601614 TROQ12816 1431 aaPredicted RBP26.85■■□□□ 1.89
SSBP4-211ENST00000601614 DMRT2Q9Y5R5 561 aa26.85■■□□□ 1.89
SSBP4-211ENST00000601614 LTBP4Q8N2S1 1624 aa26.81■■□□□ 1.88
SSBP4-211ENST00000601614 SOCS7O14512 581 aa26.81■■□□□ 1.88
SSBP4-211ENST00000601614 EHMT2Q96KQ7 1210 aa26.81■■□□□ 1.88
SSBP4-211ENST00000601614 PTPRTO14522 1441 aa26.81■■□□□ 1.88
SSBP4-211ENST00000601614 SPATA31D1Q6ZQQ2 1576 aa26.8■■□□□ 1.88
SSBP4-211ENST00000601614 CDK11AQ9UQ88 783 aaPredicted RBP26.79■■□□□ 1.88
SSBP4-211ENST00000601614 MLH3Q9UHC1 1453 aa26.79■■□□□ 1.88
SSBP4-211ENST00000601614 ITSN2Q9NZM3 1697 aa26.77■■□□□ 1.88
SSBP4-211ENST00000601614 PREX2Q70Z35 1606 aa26.77■■□□□ 1.88
SSBP4-211ENST00000601614 AGLP35573 1532 aa26.77■■□□□ 1.88
SSBP4-211ENST00000601614 TRAPPC8Q9Y2L5 1435 aa26.77■■□□□ 1.88
SSBP4-211ENST00000601614 MYT1LQ9UL68 1186 aa26.77■■□□□ 1.88
SSBP4-211ENST00000601614 ABCC1P33527 1531 aa26.76■■□□□ 1.87
SSBP4-211ENST00000601614 KIDINS220Q9ULH0 1771 aa26.75■■□□□ 1.87
SSBP4-211ENST00000601614 CLIP1P30622 1438 aa26.73■■□□□ 1.87
SSBP4-211ENST00000601614 UBTFP17480 764 aaKnown RBP26.73■■□□□ 1.87
SSBP4-211ENST00000601614 NCOA1Q15788 1441 aa26.71■■□□□ 1.87
SSBP4-211ENST00000601614 CDC42BPAQ5VT25 1732 aa26.68■■□□□ 1.86
SSBP4-211ENST00000601614 IQSEC2Q5JU85 1478 aa26.66■■□□□ 1.86
SSBP4-211ENST00000601614 CAMSAP1Q5T5Y3 1602 aa26.65■■□□□ 1.86
SSBP4-211ENST00000601614 MROH2AA6NES4 1674 aa26.63■■□□□ 1.85
SSBP4-211ENST00000601614 ESF1Q9H501 851 aaKnown RBP26.63■■□□□ 1.85
SSBP4-211ENST00000601614 CNTLNQ9NXG0 1405 aa26.63■■□□□ 1.85
SSBP4-211ENST00000601614 SAMD9LQ8IVG5 1584 aa26.61■■□□□ 1.85
SSBP4-211ENST00000601614 SUPT6HQ7KZ85 1726 aaKnown RBP26.59■■□□□ 1.85
SSBP4-211ENST00000601614 NPATQ14207 1427 aa26.57■■□□□ 1.84
SSBP4-211ENST00000601614 CCDC18Q5T9S5 1454 aa26.55■■□□□ 1.84
SSBP4-211ENST00000601614 CASKIN1Q8WXD9 1431 aa26.55■■□□□ 1.84
SSBP4-211ENST00000601614 CLTCQ00610 1675 aaKnown RBP26.54■■□□□ 1.84
SSBP4-211ENST00000601614 ZMYM3Q14202 1370 aa26.54■■□□□ 1.84
SSBP4-211ENST00000601614 SYCP2Q9BX26 1530 aa26.54■■□□□ 1.84
SSBP4-211ENST00000601614 ZNF142P52746 1687 aaPredicted RBP26.54■■□□□ 1.84
SSBP4-211ENST00000601614 ZNF335Q9H4Z2 1342 aaPredicted RBP26.53■■□□□ 1.84
SSBP4-211ENST00000601614 NCKAP5LQ9HCH0 1330 aa26.53■■□□□ 1.84
SSBP4-211ENST00000601614 MYO3AQ8NEV4 1616 aa26.53■■□□□ 1.84
SSBP4-211ENST00000601614 PLXNC1O60486 1568 aa26.49■■□□□ 1.83
SSBP4-211ENST00000601614 ZNF777Q9ULD5 760 aaPredicted RBP26.47■■□□□ 1.83
SSBP4-211ENST00000601614 INO80Q9ULG1 1556 aaPredicted RBP26.46■■□□□ 1.83
SSBP4-211ENST00000601614 CEP170BQ9Y4F5 1589 aaPredicted RBP26.46■■□□□ 1.83
SSBP4-211ENST00000601614 ATP7AQ04656 1500 aa26.46■■□□□ 1.83
SSBP4-211ENST00000601614 GPATCH8Q9UKJ3 1502 aaKnown RBP26.46■■□□□ 1.83
SSBP4-211ENST00000601614 PLA2R1Q13018 1463 aa26.45■■□□□ 1.82
SSBP4-211ENST00000601614 HNRNPMP52272 730 aaKnown RBP eCLIP26.45■■□□□ 1.821e-6■■□□□ 12.6
SSBP4-211ENST00000601614 TCOF1Q13428 1488 aaKnown RBP26.44■■□□□ 1.82
SSBP4-211ENST00000601614 PTPRKQ15262 1439 aa26.44■■□□□ 1.82
SSBP4-211ENST00000601614 SPAG9O60271 1321 aaKnown RBP26.43■■□□□ 1.82
SSBP4-211ENST00000601614 UBAP1LF5GYI3 381 aa26.43■■□□□ 1.82
SSBP4-211ENST00000601614 FYCO1Q9BQS8 1478 aa26.41■■□□□ 1.82
SSBP4-211ENST00000601614 A2MP01023 1474 aa26.4■■□□□ 1.82
SSBP4-211ENST00000601614 PKD2Q13563 968 aa26.38■■□□□ 1.81
SSBP4-211ENST00000601614 KIAA1107Q9UPP5 1409 aa26.36■■□□□ 1.81
SSBP4-211ENST00000601614 CHIC1Q5VXU3 224 aa26.34■■□□□ 1.81
SSBP4-211ENST00000601614 GGT6Q6P531 493 aa26.34■■□□□ 1.81
SSBP4-211ENST00000601614 ADGBQ8N7X0 1667 aa26.34■■□□□ 1.81
SSBP4-211ENST00000601614 DNMT1P26358 1616 aaKnown RBP26.33■■□□□ 1.81
SSBP4-211ENST00000601614 PLEKHH2Q8IVE3 1493 aa26.31■■□□□ 1.8
SSBP4-211ENST00000601614 PPP6R1Q9UPN7 881 aa26.3■■□□□ 1.8
SSBP4-211ENST00000601614 POLR1AO95602 1720 aaPredicted RBP26.3■■□□□ 1.8
SSBP4-211ENST00000601614 CFDP1Q9UEE9 299 aaPredicted RBP26.29■■□□□ 1.8
SSBP4-211ENST00000601614 A2ML1A8K2U0 1454 aa26.29■■□□□ 1.8
SSBP4-211ENST00000601614 NEURL4Q96JN8 1562 aa26.28■■□□□ 1.8
SSBP4-211ENST00000601614 MED1Q15648 1581 aaPredicted RBP26.27■■□□□ 1.8
SSBP4-211ENST00000601614 CCNB3Q8WWL7 1395 aa26.25■■□□□ 1.79
SSBP4-211ENST00000601614 HSPA1LP34931 641 aa26.24■■□□□ 1.79
SSBP4-211ENST00000601614 ZNF644Q9H582 1327 aaPredicted RBP26.23■■□□□ 1.79
SSBP4-211ENST00000601614 TIAM1Q13009 1591 aa26.23■■□□□ 1.79
SSBP4-211ENST00000601614 MBD5Q9P267 1494 aa26.22■■□□□ 1.79
SSBP4-211ENST00000601614 CPS1P31327 1500 aa26.19■■□□□ 1.78
SSBP4-211ENST00000601614 SCAF1Q9H7N4 1312 aaKnown RBP26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms