RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 RAPGEF6Q8TEU7 1601 aa28.3■■■□□ 2.12
SHKBP1-225ENST00000600733 GRIN2AQ12879 1464 aa28.29■■■□□ 2.12
SHKBP1-225ENST00000600733 ROCK1Q13464 1354 aa28.29■■■□□ 2.12
SHKBP1-225ENST00000600733 EIF4G2P78344 907 aaKnown RBP eCLIP28.27■■■□□ 2.12
SHKBP1-225ENST00000600733 EIF4G3O43432 1585 aaKnown RBP28.27■■■□□ 2.12
SHKBP1-225ENST00000600733 NEFLP07196 543 aa28.24■■■□□ 2.11
SHKBP1-225ENST00000600733 MYT1Q01538 1121 aa28.24■■■□□ 2.11
SHKBP1-225ENST00000600733 ANKRD30BQ9BXX2 1392 aa28.23■■■□□ 2.11
SHKBP1-225ENST00000600733 CDK11AQ9UQ88 783 aaPredicted RBP28.21■■■□□ 2.11
SHKBP1-225ENST00000600733 RPRD2Q5VT52 1461 aaKnown RBP28.2■■■□□ 2.1
SHKBP1-225ENST00000600733 PRG4Q92954 1404 aaPredicted RBP28.19■■■□□ 2.1
SHKBP1-225ENST00000600733 SLC4A1APQ9BWU0 796 aaKnown RBP28.17■■■□□ 2.1
SHKBP1-225ENST00000600733 C11orf95C9JLR9 678 aaPredicted RBP28.17■■■□□ 2.1
SHKBP1-225ENST00000600733 HNRNPUQ00839 825 aaKnown RBP eCLIP28.16■■■□□ 2.1
SHKBP1-225ENST00000600733 NBPF8Q3BBV2 869 aa28.16■■■□□ 2.1
SHKBP1-225ENST00000600733 TEX14Q8IWB6 1497 aa28.16■■■□□ 2.1
SHKBP1-225ENST00000600733 PLB1Q6P1J6 1458 aa28.14■■■□□ 2.1
SHKBP1-225ENST00000600733 TROQ12816 1431 aaPredicted RBP28.14■■■□□ 2.1
SHKBP1-225ENST00000600733 CNTLNQ9NXG0 1405 aa28.14■■■□□ 2.1
SHKBP1-225ENST00000600733 CAMSAP2Q08AD1 1489 aa28.12■■■□□ 2.09
SHKBP1-225ENST00000600733 CEP170Q5SW79 1584 aa28.12■■■□□ 2.09
SHKBP1-225ENST00000600733 NCOA1Q15788 1441 aa28.12■■■□□ 2.09
SHKBP1-225ENST00000600733 CFDP1Q9UEE9 299 aaPredicted RBP28.11■■■□□ 2.09
SHKBP1-225ENST00000600733 CHMP7Q8WUX9 453 aaPredicted RBP28.11■■■□□ 2.09
SHKBP1-225ENST00000600733 CCDC7Q96M83 1385 aa28.1■■■□□ 2.09
SHKBP1-225ENST00000600733 MAGI1Q96QZ7 1491 aaPredicted RBP28.09■■■□□ 2.09
SHKBP1-225ENST00000600733 KIF14Q15058 1648 aa28.08■■■□□ 2.09
SHKBP1-225ENST00000600733 GPATCH8Q9UKJ3 1502 aaKnown RBP28.07■■■□□ 2.08
SHKBP1-225ENST00000600733 PZPP20742 1482 aa28.07■■■□□ 2.08
SHKBP1-225ENST00000600733 FBLN2P98095 1184 aa28.07■■■□□ 2.08
SHKBP1-225ENST00000600733 CCDC184Q52MB2 194 aa28.07■■■□□ 2.08
SHKBP1-225ENST00000600733 ITSN2Q9NZM3 1697 aa28.07■■■□□ 2.08
SHKBP1-225ENST00000600733 ERCC6Q03468 1493 aa28.06■■■□□ 2.08
SHKBP1-225ENST00000600733 ZNF777Q9ULD5 760 aaPredicted RBP28.06■■■□□ 2.08
SHKBP1-225ENST00000600733 SYNJ2O15056 1496 aa28.05■■■□□ 2.08
SHKBP1-225ENST00000600733 ADGBQ8N7X0 1667 aa28.03■■■□□ 2.08
SHKBP1-225ENST00000600733 SPATA31E1Q6ZUB1 1445 aa28.01■■■□□ 2.07
SHKBP1-225ENST00000600733 ADCY10Q96PN6 1610 aa28.01■■■□□ 2.07
SHKBP1-225ENST00000600733 PRKRIP1Q9H875 184 aaPredicted RBP28.01■■■□□ 2.07
SHKBP1-225ENST00000600733 KIF7Q2M1P5 1343 aa27.98■■■□□ 2.07
SHKBP1-225ENST00000600733 CROCC2H7BZ55 1655 aa27.98■■■□□ 2.07
SHKBP1-225ENST00000600733 JPH4Q96JJ6 628 aa27.97■■■□□ 2.07
SHKBP1-225ENST00000600733 CARMIL2Q6F5E8 1435 aa27.97■■■□□ 2.07
SHKBP1-225ENST00000600733 ADGRL2O95490 1459 aa27.96■■■□□ 2.07
SHKBP1-225ENST00000600733 POLR1AO95602 1720 aaPredicted RBP27.94■■■□□ 2.06
SHKBP1-225ENST00000600733 NUP160Q12769 1436 aa27.93■■■□□ 2.06
SHKBP1-225ENST00000600733 KIAA1107Q9UPP5 1409 aa27.93■■■□□ 2.06
SHKBP1-225ENST00000600733 IRX6P78412 446 aaPredicted RBP27.92■■■□□ 2.06
SHKBP1-225ENST00000600733 ANKRD30AQ9BXX3 1397 aa27.91■■■□□ 2.06
SHKBP1-225ENST00000600733 PKD2Q13563 968 aa27.9■■■□□ 2.06
SHKBP1-225ENST00000600733 FAM9BQ8IZU0 186 aa27.9■■■□□ 2.06
SHKBP1-225ENST00000600733 MRS2Q9HD23 443 aa27.9■■■□□ 2.06
SHKBP1-225ENST00000600733 MBD5Q9P267 1494 aa27.9■■■□□ 2.06
SHKBP1-225ENST00000600733 CDC42BPAQ5VT25 1732 aa27.88■■■□□ 2.05
SHKBP1-225ENST00000600733 ZNF326Q5BKZ1 582 aaKnown RBP27.88■■■□□ 2.05
SHKBP1-225ENST00000600733 ANKRD50Q9ULJ7 1429 aa27.88■■■□□ 2.05
SHKBP1-225ENST00000600733 PLEKHD1A6NEE1 506 aa27.85■■■□□ 2.05
SHKBP1-225ENST00000600733 ABCA8O94911 1581 aa27.84■■■□□ 2.05
SHKBP1-225ENST00000600733 RBM19Q9Y4C8 960 aaKnown RBP27.84■■■□□ 2.05
SHKBP1-225ENST00000600733 ATP10BO94823 1461 aa27.82■■■□□ 2.04
SHKBP1-225ENST00000600733 ABCC10Q5T3U5 1492 aa27.82■■■□□ 2.04
SHKBP1-225ENST00000600733 USP47Q96K76 1375 aa27.82■■■□□ 2.04
SHKBP1-225ENST00000600733 BCORL1Q5H9F3 1711 aa27.8■■■□□ 2.04
SHKBP1-225ENST00000600733 C9orf84Q5VXU9 1444 aa27.8■■■□□ 2.04
SHKBP1-225ENST00000600733 NUP155O75694 1391 aa27.78■■■□□ 2.04
SHKBP1-225ENST00000600733 POLR3GLQ9BT43 218 aa27.76■■■□□ 2.04
SHKBP1-225ENST00000600733 SHANK2Q9UPX8 1470 aa27.76■■■□□ 2.03
SHKBP1-225ENST00000600733 ZBED9Q6R2W3 1325 aa27.76■■■□□ 2.03
SHKBP1-225ENST00000600733 DHX29Q7Z478 1369 aaKnown RBP27.75■■■□□ 2.03
SHKBP1-225ENST00000600733 CNGB1Q14028 1251 aaPredicted RBP27.74■■■□□ 2.03
SHKBP1-225ENST00000600733 KDM5CP41229 1560 aa27.74■■■□□ 2.03
SHKBP1-225ENST00000600733 ANP32EQ9BTT0 268 aa27.72■■■□□ 2.03
SHKBP1-225ENST00000600733 TSPY4P0CV99 314 aa27.71■■■□□ 2.03
SHKBP1-225ENST00000600733 TSPY10P0CW01 314 aa27.71■■■□□ 2.03
SHKBP1-225ENST00000600733 HNRNPMP52272 730 aaKnown RBP eCLIP27.7■■■□□ 2.03
SHKBP1-225ENST00000600733 UHRF1BP1Q6BDS2 1440 aa27.68■■■□□ 2.02
SHKBP1-225ENST00000600733 KIF15Q9NS87 1388 aa27.67■■■□□ 2.02
SHKBP1-225ENST00000600733 RALGAPBQ86X10 1494 aa27.66■■■□□ 2.02
SHKBP1-225ENST00000600733 KDM5DQ9BY66 1539 aa27.66■■■□□ 2.02
SHKBP1-225ENST00000600733 ERICH6BQ5W0A0 696 aa27.64■■■□□ 2.01
SHKBP1-225ENST00000600733 CARD11Q9BXL7 1154 aa27.63■■■□□ 2.01
SHKBP1-225ENST00000600733 KDM2AQ9Y2K7 1162 aa27.63■■■□□ 2.01
SHKBP1-225ENST00000600733 ARHGEF12Q9NZN5 1544 aa27.62■■■□□ 2.01
SHKBP1-225ENST00000600733 ARHGEF5Q12774 1597 aa27.62■■■□□ 2.01
SHKBP1-225ENST00000600733 PPP4R2Q9NY27 417 aa27.61■■■□□ 2.01
SHKBP1-225ENST00000600733 PTPRGP23470 1445 aa27.61■■■□□ 2.01
SHKBP1-225ENST00000600733 ARID4BQ4LE39 1312 aaPredicted RBP27.61■■■□□ 2.01
SHKBP1-225ENST00000600733 SAMD9LQ8IVG5 1584 aa27.58■■■□□ 2.01
SHKBP1-225ENST00000600733 CDC42BPBQ9Y5S2 1711 aa27.58■■■□□ 2
SHKBP1-225ENST00000600733 DCAF11Q8TEB1 546 aa27.57■■■□□ 2
SHKBP1-225ENST00000600733 CCDC141Q6ZP82 1450 aa27.56■■■□□ 2
SHKBP1-225ENST00000600733 ST20-MTHFSA0A0A6YYL1 179 aa27.55■■■□□ 2
SHKBP1-225ENST00000600733 PREX2Q70Z35 1606 aa27.54■■■□□ 2
SHKBP1-225ENST00000600733 ROCK2O75116 1388 aaKnown RBP27.53■■■□□ 2
SHKBP1-225ENST00000600733 FAM135AQ9P2D6 1515 aa27.52■■■□□ 2
SHKBP1-225ENST00000600733 B4GALNT3Q6L9W6 998 aa27.51■■□□□ 1.99
SHKBP1-225ENST00000600733 SENP3-EIF4A1A0A087X0R7 540 aa27.49■■□□□ 1.99
SHKBP1-225ENST00000600733 SMG6Q86US8 1419 aaKnown RBP27.48■■□□□ 1.99
SHKBP1-225ENST00000600733 SYCP2Q9BX26 1530 aa27.46■■□□□ 1.99
SHKBP1-225ENST00000600733 PNISRQ8TF01 805 aaKnown RBP27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms