RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ARHGEF40Q8TER5 1519 aa14.51□□□□□ -0.09
SHKBP1-220ENST00000599716 AKNAQ7Z591 1439 aa14.5□□□□□ -0.09
SHKBP1-220ENST00000599716 LTBP4Q8N2S1 1624 aa14.5□□□□□ -0.09
SHKBP1-220ENST00000599716 FANCAO15360 1455 aa14.5□□□□□ -0.09
SHKBP1-220ENST00000599716 DENND4BO75064 1496 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-220ENST00000599716 PTPRTO14522 1441 aa14.49□□□□□ -0.09
SHKBP1-220ENST00000599716 EEA1Q15075 1411 aa14.49□□□□□ -0.09
SHKBP1-220ENST00000599716 ATP1B4Q9UN42 357 aaPredicted RBP14.48□□□□□ -0.09
SHKBP1-220ENST00000599716 MED1Q15648 1581 aaPredicted RBP14.47□□□□□ -0.09
SHKBP1-220ENST00000599716 MLECQ14165 292 aa14.47□□□□□ -0.09
SHKBP1-220ENST00000599716 STRCQ7RTU9 1775 aa14.47□□□□□ -0.09
SHKBP1-220ENST00000599716 EFCAB5A4FU69 1503 aa14.46□□□□□ -0.1
SHKBP1-220ENST00000599716 PREX1Q8TCU6 1659 aa14.45□□□□□ -0.1
SHKBP1-220ENST00000599716 HECW1Q76N89 1606 aa14.44□□□□□ -0.1
SHKBP1-220ENST00000599716 CFAP74Q9C0B2 1584 aa14.43□□□□□ -0.1
SHKBP1-220ENST00000599716 ZFYVE16Q7Z3T8 1539 aa14.43□□□□□ -0.1
SHKBP1-220ENST00000599716 UBTFP17480 764 aaKnown RBP14.43□□□□□ -0.1
SHKBP1-220ENST00000599716 ZMYM4Q5VZL5 1548 aa14.41□□□□□ -0.1
SHKBP1-220ENST00000599716 UBAP1LF5GYI3 381 aa14.41□□□□□ -0.1
SHKBP1-220ENST00000599716 KIF14Q15058 1648 aa14.41□□□□□ -0.1
SHKBP1-220ENST00000599716 UHRF1BP1Q6BDS2 1440 aa14.41□□□□□ -0.1
SHKBP1-220ENST00000599716 SCAPERQ9BY12 1400 aa14.41□□□□□ -0.1
SHKBP1-220ENST00000599716 ARHGAP35Q9NRY4 1499 aa14.39□□□□□ -0.11
SHKBP1-220ENST00000599716 FER1L4A9Z1Z3 1794 aa14.38□□□□□ -0.11
SHKBP1-220ENST00000599716 PLCH2O75038 1416 aa14.38□□□□□ -0.11
SHKBP1-220ENST00000599716 LRRIQ1Q96JM4 1722 aa14.38□□□□□ -0.11
SHKBP1-220ENST00000599716 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
SHKBP1-220ENST00000599716 MYO5CQ9NQX4 1742 aa14.36□□□□□ -0.11
SHKBP1-220ENST00000599716 CEBPAP49715 358 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-220ENST00000599716 MAGI2Q86UL8 1455 aa14.33□□□□□ -0.12
SHKBP1-220ENST00000599716 AFAP1Q8N556 730 aa14.33□□□□□ -0.12
SHKBP1-220ENST00000599716 FMN1Q68DA7 1419 aa14.32□□□□□ -0.12
SHKBP1-220ENST00000599716 ARHGEF12Q9NZN5 1544 aa14.32□□□□□ -0.12
SHKBP1-220ENST00000599716 HSPA1LP34931 641 aa14.32□□□□□ -0.12
SHKBP1-220ENST00000599716 EFCAB2Q5VUJ9 269 aa14.32□□□□□ -0.12
SHKBP1-220ENST00000599716 ATP10AO60312 1499 aa14.31□□□□□ -0.12
SHKBP1-220ENST00000599716 ARHGAP5Q13017 1502 aa14.31□□□□□ -0.12
SHKBP1-220ENST00000599716 MYT1LQ9UL68 1186 aa14.31□□□□□ -0.12
SHKBP1-220ENST00000599716 TROQ12816 1431 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-220ENST00000599716 NCOA1Q15788 1441 aa14.3□□□□□ -0.12
SHKBP1-220ENST00000599716 C9orf84Q5VXU9 1444 aa14.3□□□□□ -0.12
SHKBP1-220ENST00000599716 CDC42BPBQ9Y5S2 1711 aa14.28□□□□□ -0.12
SHKBP1-220ENST00000599716 CDK11AQ9UQ88 783 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-220ENST00000599716 SETD1BQ9UPS6 1966 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-220ENST00000599716 DIP2CQ9Y2E4 1556 aa14.26□□□□□ -0.13
SHKBP1-220ENST00000599716 ABCA6Q8N139 1617 aa14.26□□□□□ -0.13
SHKBP1-220ENST00000599716 KDM5CP41229 1560 aa14.26□□□□□ -0.13
SHKBP1-220ENST00000599716 ZNF518AQ6AHZ1 1483 aa14.25□□□□□ -0.13
SHKBP1-220ENST00000599716 TRAPPC8Q9Y2L5 1435 aa14.25□□□□□ -0.13
SHKBP1-220ENST00000599716 ZNF335Q9H4Z2 1342 aaPredicted RBP14.25□□□□□ -0.13
SHKBP1-220ENST00000599716 CLIP1P30622 1438 aa14.24□□□□□ -0.13
SHKBP1-220ENST00000599716 PREX2Q70Z35 1606 aa14.23□□□□□ -0.13
SHKBP1-220ENST00000599716 ABCC1P33527 1531 aa14.21□□□□□ -0.13
SHKBP1-220ENST00000599716 SCAF1Q9H7N4 1312 aaKnown RBP14.21□□□□□ -0.13
SHKBP1-220ENST00000599716 ITSN2Q9NZM3 1697 aa14.21□□□□□ -0.13
SHKBP1-220ENST00000599716 C3P01024 1663 aa14.2□□□□□ -0.14
SHKBP1-220ENST00000599716 ZNF777Q9ULD5 760 aaPredicted RBP14.2□□□□□ -0.14
SHKBP1-220ENST00000599716 CDC42BPAQ5VT25 1732 aa14.2□□□□□ -0.14
SHKBP1-220ENST00000599716 CASKIN1Q8WXD9 1431 aa14.19□□□□□ -0.14
SHKBP1-220ENST00000599716 PIP4K2BP78356 416 aa14.18□□□□□ -0.14
SHKBP1-220ENST00000599716 KIDINS220Q9ULH0 1771 aa14.18□□□□□ -0.14
SHKBP1-220ENST00000599716 MLH3Q9UHC1 1453 aa14.18□□□□□ -0.14
SHKBP1-220ENST00000599716 TOM1O60784 492 aa14.17□□□□□ -0.14
SHKBP1-220ENST00000599716 CCDC18Q5T9S5 1454 aa14.16□□□□□ -0.14
SHKBP1-220ENST00000599716 SAMD9LQ8IVG5 1584 aa14.15□□□□□ -0.14
SHKBP1-220ENST00000599716 REREQ9P2R6 1566 aa14.15□□□□□ -0.14
SHKBP1-220ENST00000599716 SYCP2Q9BX26 1530 aa14.15□□□□□ -0.14
SHKBP1-220ENST00000599716 HNRNPMP52272 730 aaKnown RBP eCLIP14.14□□□□□ -0.15
SHKBP1-220ENST00000599716 CAMSAP1Q5T5Y3 1602 aa14.13□□□□□ -0.15
SHKBP1-220ENST00000599716 ESF1Q9H501 851 aaKnown RBP14.13□□□□□ -0.15
SHKBP1-220ENST00000599716 RGS17Q9UGC6 210 aaPredicted RBP14.13□□□□□ -0.15
SHKBP1-220ENST00000599716 SUPT6HQ7KZ85 1726 aaKnown RBP14.12□□□□□ -0.15
SHKBP1-220ENST00000599716 FYCO1Q9BQS8 1478 aa14.12□□□□□ -0.15
SHKBP1-220ENST00000599716 AGLP35573 1532 aa14.12□□□□□ -0.15
SHKBP1-220ENST00000599716 GPATCH8Q9UKJ3 1502 aaKnown RBP14.11□□□□□ -0.15
SHKBP1-220ENST00000599716 NCKAP5LQ9HCH0 1330 aa14.1□□□□□ -0.15
SHKBP1-220ENST00000599716 PKD2Q13563 968 aa14.09□□□□□ -0.15
SHKBP1-220ENST00000599716 SPAG9O60271 1321 aaKnown RBP14.09□□□□□ -0.15
SHKBP1-220ENST00000599716 PLA2R1Q13018 1463 aa14.08□□□□□ -0.16
SHKBP1-220ENST00000599716 CLTCQ00610 1675 aaKnown RBP14.07□□□□□ -0.16
SHKBP1-220ENST00000599716 ZNF644Q9H582 1327 aaPredicted RBP14.07□□□□□ -0.16
SHKBP1-220ENST00000599716 ATP7AQ04656 1500 aa14.06□□□□□ -0.16
SHKBP1-220ENST00000599716 CFDP1Q9UEE9 299 aaPredicted RBP14.06□□□□□ -0.16
SHKBP1-220ENST00000599716 NPATQ14207 1427 aa14.06□□□□□ -0.16
SHKBP1-220ENST00000599716 PTPRKQ15262 1439 aa14.06□□□□□ -0.16
SHKBP1-220ENST00000599716 TCOF1Q13428 1488 aaKnown RBP14.06□□□□□ -0.16
SHKBP1-220ENST00000599716 CPS1P31327 1500 aa14.05□□□□□ -0.16
SHKBP1-220ENST00000599716 PPP6R1Q9UPN7 881 aa14.05□□□□□ -0.16
SHKBP1-220ENST00000599716 ZMYM3Q14202 1370 aa14.05□□□□□ -0.16
SHKBP1-220ENST00000599716 INO80Q9ULG1 1556 aaPredicted RBP14.05□□□□□ -0.16
SHKBP1-220ENST00000599716 GGT6Q6P531 493 aa14.04□□□□□ -0.16
SHKBP1-220ENST00000599716 CCNB3Q8WWL7 1395 aa14.04□□□□□ -0.16
SHKBP1-220ENST00000599716 CNTLNQ9NXG0 1405 aa14.04□□□□□ -0.16
SHKBP1-220ENST00000599716 MROH2AA6NES4 1674 aa14.03□□□□□ -0.16
SHKBP1-220ENST00000599716 PLXNC1O60486 1568 aa14.02□□□□□ -0.16
SHKBP1-220ENST00000599716 A2MP01023 1474 aa14.02□□□□□ -0.16
SHKBP1-220ENST00000599716 MTUS2Q5JR59 1369 aa14.02□□□□□ -0.17
SHKBP1-220ENST00000599716 TIAM1Q13009 1591 aa14.01□□□□□ -0.17
SHKBP1-220ENST00000599716 MYO3AQ8NEV4 1616 aa14.01□□□□□ -0.17
SHKBP1-220ENST00000599716 POTEAQ6S8J7 498 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms