RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 STRCQ7RTU9 1775 aa26.62■■□□□ 1.85
LIG1-214ENST00000597146 ARHGEF12Q9NZN5 1544 aa26.56■■□□□ 1.84
LIG1-214ENST00000597146 MAGI2Q86UL8 1455 aa26.55■■□□□ 1.84
LIG1-214ENST00000597146 PLEKHD1A6NEE1 506 aa26.5■■□□□ 1.83
LIG1-214ENST00000597146 RANGAP1P46060 587 aaPredicted RBP26.47■■□□□ 1.83
LIG1-214ENST00000597146 CEBPAP49715 358 aaPredicted RBP26.46■■□□□ 1.83
LIG1-214ENST00000597146 C9orf84Q5VXU9 1444 aa26.46■■□□□ 1.83
LIG1-214ENST00000597146 SCAPERQ9BY12 1400 aa26.45■■□□□ 1.82
LIG1-214ENST00000597146 ATP10AO60312 1499 aa26.44■■□□□ 1.82
LIG1-214ENST00000597146 CDK13Q14004 1512 aaKnown RBP26.43■■□□□ 1.82
LIG1-214ENST00000597146 MYO5CQ9NQX4 1742 aa26.41■■□□□ 1.82
LIG1-214ENST00000597146 UHRF1BP1Q6BDS2 1440 aa26.4■■□□□ 1.82
LIG1-214ENST00000597146 DMRT2Q9Y5R5 561 aa26.38■■□□□ 1.81
LIG1-214ENST00000597146 SETD1BQ9UPS6 1966 aaKnown RBP26.38■■□□□ 1.81
LIG1-214ENST00000597146 PLCH2O75038 1416 aa26.38■■□□□ 1.81
LIG1-214ENST00000597146 C3P01024 1663 aa26.38■■□□□ 1.81
LIG1-214ENST00000597146 LTBP4Q8N2S1 1624 aa26.36■■□□□ 1.81
LIG1-214ENST00000597146 CSRNP3Q8WYN3 585 aa26.33■■□□□ 1.81
LIG1-214ENST00000597146 PTPRTO14522 1441 aa26.31■■□□□ 1.8
LIG1-214ENST00000597146 DIP2CQ9Y2E4 1556 aa26.31■■□□□ 1.8
LIG1-214ENST00000597146 KDM5CP41229 1560 aa26.29■■□□□ 1.8
LIG1-214ENST00000597146 KIF14Q15058 1648 aa26.29■■□□□ 1.8
LIG1-214ENST00000597146 ABCA6Q8N139 1617 aa26.27■■□□□ 1.8
LIG1-214ENST00000597146 ZNF518AQ6AHZ1 1483 aa26.26■■□□□ 1.79
LIG1-214ENST00000597146 IQSEC2Q5JU85 1478 aa26.24■■□□□ 1.79
LIG1-214ENST00000597146 REREQ9P2R6 1566 aa26.24■■□□□ 1.79
LIG1-214ENST00000597146 ARHGAP5Q13017 1502 aa26.2■■□□□ 1.79
LIG1-214ENST00000597146 EFCAB2Q5VUJ9 269 aa26.2■■□□□ 1.78
LIG1-214ENST00000597146 NCOA1Q15788 1441 aa26.2■■□□□ 1.78
LIG1-214ENST00000597146 AFAP1Q8N556 730 aa26.18■■□□□ 1.78
LIG1-214ENST00000597146 CDC42BPBQ9Y5S2 1711 aa26.15■■□□□ 1.78
LIG1-214ENST00000597146 MYT1LQ9UL68 1186 aa26.14■■□□□ 1.78
LIG1-214ENST00000597146 CAMSAP1Q5T5Y3 1602 aa26.14■■□□□ 1.77
LIG1-214ENST00000597146 TRAPPC8Q9Y2L5 1435 aa26.14■■□□□ 1.77
LIG1-214ENST00000597146 LRRIQ1Q96JM4 1722 aa26.13■■□□□ 1.77
LIG1-214ENST00000597146 AGLP35573 1532 aa26.12■■□□□ 1.77
LIG1-214ENST00000597146 ITSN2Q9NZM3 1697 aa26.11■■□□□ 1.77
LIG1-214ENST00000597146 MLH3Q9UHC1 1453 aa26.1■■□□□ 1.77
LIG1-214ENST00000597146 EEA1Q15075 1411 aa26.09■■□□□ 1.77
LIG1-214ENST00000597146 ATP1B4Q9UN42 357 aaPredicted RBP26.09■■□□□ 1.77
LIG1-214ENST00000597146 KIDINS220Q9ULH0 1771 aa26.07■■□□□ 1.76
LIG1-214ENST00000597146 ABCC1P33527 1531 aa26.07■■□□□ 1.76
LIG1-214ENST00000597146 PREX2Q70Z35 1606 aa26.06■■□□□ 1.76
LIG1-214ENST00000597146 TROQ12816 1431 aaPredicted RBP26.06■■□□□ 1.76
LIG1-214ENST00000597146 MROH2AA6NES4 1674 aa26.06■■□□□ 1.76
LIG1-214ENST00000597146 ESF1Q9H501 851 aaKnown RBP26.06■■□□□ 1.76
LIG1-214ENST00000597146 SUPT6HQ7KZ85 1726 aaKnown RBP26.05■■□□□ 1.76
LIG1-214ENST00000597146 ZNF335Q9H4Z2 1342 aaPredicted RBP26.04■■□□□ 1.76
LIG1-214ENST00000597146 FMN1Q68DA7 1419 aa26.02■■□□□ 1.76
LIG1-214ENST00000597146 CNTLNQ9NXG0 1405 aa26.02■■□□□ 1.76
LIG1-214ENST00000597146 UBAP1LF5GYI3 381 aa26.01■■□□□ 1.75
LIG1-214ENST00000597146 ZNF142P52746 1687 aaPredicted RBP26.01■■□□□ 1.75
LIG1-214ENST00000597146 MYO3AQ8NEV4 1616 aa26.01■■□□□ 1.75
LIG1-214ENST00000597146 CLIP1P30622 1438 aa25.99■■□□□ 1.75
LIG1-214ENST00000597146 CDK11AQ9UQ88 783 aaPredicted RBP25.99■■□□□ 1.75
LIG1-214ENST00000597146 NCKAP5LQ9HCH0 1330 aa25.98■■□□□ 1.75
LIG1-214ENST00000597146 NPATQ14207 1427 aa25.97■■□□□ 1.75
LIG1-214ENST00000597146 MED1Q15648 1581 aaPredicted RBP25.97■■□□□ 1.75
LIG1-214ENST00000597146 ARHGAP35Q9NRY4 1499 aa25.97■■□□□ 1.75
LIG1-214ENST00000597146 CLTCQ00610 1675 aaKnown RBP25.96■■□□□ 1.75
LIG1-214ENST00000597146 CDC42BPAQ5VT25 1732 aa25.95■■□□□ 1.74
LIG1-214ENST00000597146 CEP170BQ9Y4F5 1589 aaPredicted RBP25.92■■□□□ 1.74
LIG1-214ENST00000597146 PLA2R1Q13018 1463 aa25.91■■□□□ 1.74
LIG1-214ENST00000597146 SAMD9LQ8IVG5 1584 aa25.9■■□□□ 1.74
LIG1-214ENST00000597146 EHMT2Q96KQ7 1210 aa25.89■■□□□ 1.74
LIG1-214ENST00000597146 ZMYM3Q14202 1370 aa25.89■■□□□ 1.74
LIG1-214ENST00000597146 TCOF1Q13428 1488 aaKnown RBP25.89■■□□□ 1.73
LIG1-214ENST00000597146 SYCP2Q9BX26 1530 aa25.83■■□□□ 1.73
LIG1-214ENST00000597146 PLXNC1O60486 1568 aa25.82■■□□□ 1.72
LIG1-214ENST00000597146 HSPA1LP34931 641 aa25.82■■□□□ 1.72
LIG1-214ENST00000597146 PTPRKQ15262 1439 aa25.81■■□□□ 1.72
LIG1-214ENST00000597146 PKD2Q13563 968 aa25.81■■□□□ 1.72
LIG1-214ENST00000597146 SCAF1Q9H7N4 1312 aaKnown RBP25.81■■□□□ 1.72
LIG1-214ENST00000597146 POLR1AO95602 1720 aaPredicted RBP25.8■■□□□ 1.72
LIG1-214ENST00000597146 INO80Q9ULG1 1556 aaPredicted RBP25.79■■□□□ 1.72
LIG1-214ENST00000597146 ATP7AQ04656 1500 aa25.78■■□□□ 1.72
LIG1-214ENST00000597146 UBTFP17480 764 aaKnown RBP25.78■■□□□ 1.72
LIG1-214ENST00000597146 PIP4K2BP78356 416 aa25.77■■□□□ 1.72
LIG1-214ENST00000597146 PPP6R1Q9UPN7 881 aa25.77■■□□□ 1.72
LIG1-214ENST00000597146 DNMT1P26358 1616 aaKnown RBP25.76■■□□□ 1.71
LIG1-214ENST00000597146 CCDC18Q5T9S5 1454 aa25.75■■□□□ 1.71
LIG1-214ENST00000597146 NEURL4Q96JN8 1562 aa25.73■■□□□ 1.71
LIG1-214ENST00000597146 SPAG9O60271 1321 aaKnown RBP25.72■■□□□ 1.71
LIG1-214ENST00000597146 ZNF777Q9ULD5 760 aaPredicted RBP25.72■■□□□ 1.71
LIG1-214ENST00000597146 A2MP01023 1474 aa25.72■■□□□ 1.71
LIG1-214ENST00000597146 CPS1P31327 1500 aa25.71■■□□□ 1.71
LIG1-214ENST00000597146 A2ML1A8K2U0 1454 aa25.71■■□□□ 1.71
LIG1-214ENST00000597146 CASKIN1Q8WXD9 1431 aa25.69■■□□□ 1.7
LIG1-214ENST00000597146 ALKQ9UM73 1620 aa25.68■■□□□ 1.7
LIG1-214ENST00000597146 ADGBQ8N7X0 1667 aa25.68■■□□□ 1.7
LIG1-214ENST00000597146 HNRNPMP52272 730 aaKnown RBP eCLIP25.66■■□□□ 1.7
LIG1-214ENST00000597146 GGT6Q6P531 493 aa25.66■■□□□ 1.7
LIG1-214ENST00000597146 GPATCH8Q9UKJ3 1502 aaKnown RBP25.66■■□□□ 1.7
LIG1-214ENST00000597146 SHANK2Q9UPX8 1470 aa25.66■■□□□ 1.7
LIG1-214ENST00000597146 TOM1O60784 492 aa25.64■■□□□ 1.7
LIG1-214ENST00000597146 PHF23Q9BUL5 403 aaPredicted RBP25.64■■□□□ 1.7
LIG1-214ENST00000597146 VWDEQ8N2E2 1590 aa25.63■■□□□ 1.69
LIG1-214ENST00000597146 KIAA1107Q9UPP5 1409 aa25.58■■□□□ 1.69
LIG1-214ENST00000597146 PLEKHH2Q8IVE3 1493 aa25.57■■□□□ 1.68
LIG1-214ENST00000597146 FYCO1Q9BQS8 1478 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms