RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CFDP1Q9UEE9 299 aaPredicted RBP28.42■■■□□ 2.14
CLIP3-206ENST00000593074 ZNF644Q9H582 1327 aaPredicted RBP28.41■■■□□ 2.14
CLIP3-206ENST00000593074 GPATCH8Q9UKJ3 1502 aaKnown RBP28.41■■■□□ 2.14
CLIP3-206ENST00000593074 CAMSAP2Q08AD1 1489 aa28.39■■■□□ 2.14
CLIP3-206ENST00000593074 DENND4BO75064 1496 aaPredicted RBP28.37■■■□□ 2.13
CLIP3-206ENST00000593074 CENPBP07199 599 aaPredicted RBP28.36■■■□□ 2.13
CLIP3-206ENST00000593074 ACIN1Q9UKV3 1341 aaKnown RBP28.36■■■□□ 2.13
CLIP3-206ENST00000593074 CLASP1Q7Z460 1538 aa28.35■■■□□ 2.13
CLIP3-206ENST00000593074 PPP1R15AO75807 674 aaPredicted RBP28.34■■■□□ 2.13
CLIP3-206ENST00000593074 TONSLQ96HA7 1378 aa28.33■■■□□ 2.13
CLIP3-206ENST00000593074 ABCC10Q5T3U5 1492 aa28.33■■■□□ 2.13
CLIP3-206ENST00000593074 ERCC6L2Q5T890 1561 aa28.32■■■□□ 2.12
CLIP3-206ENST00000593074 CROCC2H7BZ55 1655 aa28.32■■■□□ 2.12
CLIP3-206ENST00000593074 ADGBQ8N7X0 1667 aa28.31■■■□□ 2.12
CLIP3-206ENST00000593074 CDC42BPAQ5VT25 1732 aa28.3■■■□□ 2.12
CLIP3-206ENST00000593074 ZNF777Q9ULD5 760 aaPredicted RBP28.3■■■□□ 2.12
CLIP3-206ENST00000593074 SCAF1Q9H7N4 1312 aaKnown RBP28.29■■■□□ 2.12
CLIP3-206ENST00000593074 KDM5BQ9UGL1 1544 aa28.27■■■□□ 2.12
CLIP3-206ENST00000593074 ADGRL2O95490 1459 aa28.26■■■□□ 2.11
CLIP3-206ENST00000593074 TRIM52Q96A61 297 aa28.25■■■□□ 2.11
CLIP3-206ENST00000593074 ABCC2Q92887 1545 aa28.23■■■□□ 2.11
CLIP3-206ENST00000593074 NCOA1Q15788 1441 aa28.2■■■□□ 2.11
CLIP3-206ENST00000593074 MPHOSPH9Q99550 1183 aa28.2■■■□□ 2.11
CLIP3-206ENST00000593074 SHANK2Q9UPX8 1470 aa28.17■■■□□ 2.1
CLIP3-206ENST00000593074 UHRF1BP1LA0JNW5 1464 aa28.13■■■□□ 2.09
CLIP3-206ENST00000593074 PREX2Q70Z35 1606 aa28.11■■■□□ 2.09
CLIP3-206ENST00000593074 YTHDC1Q96MU7 727 aaKnown RBP28.11■■■□□ 2.09
CLIP3-206ENST00000593074 ANKRD30AQ9BXX3 1397 aa28.1■■■□□ 2.09
CLIP3-206ENST00000593074 ARHGEF5Q12774 1597 aa28.09■■■□□ 2.09
CLIP3-206ENST00000593074 ANKRD30BQ9BXX2 1392 aa28.08■■■□□ 2.09
CLIP3-206ENST00000593074 PZPP20742 1482 aa28.08■■■□□ 2.09
CLIP3-206ENST00000593074 CDC42BPBQ9Y5S2 1711 aa28.06■■■□□ 2.08
CLIP3-206ENST00000593074 TSPY4P0CV99 314 aa28.06■■■□□ 2.08
CLIP3-206ENST00000593074 TSPY10P0CW01 314 aa28.06■■■□□ 2.08
CLIP3-206ENST00000593074 RPRD2Q5VT52 1461 aaKnown RBP28.05■■■□□ 2.08
CLIP3-206ENST00000593074 C9orf84Q5VXU9 1444 aa28.05■■■□□ 2.08
CLIP3-206ENST00000593074 HNRNPMP52272 730 aaKnown RBP eCLIP28.04■■■□□ 2.08
CLIP3-206ENST00000593074 SAMD9LQ8IVG5 1584 aa28.03■■■□□ 2.08
CLIP3-206ENST00000593074 KCNH8Q96L42 1107 aa28.03■■■□□ 2.08
CLIP3-206ENST00000593074 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.02■■■□□ 2.08
CLIP3-206ENST00000593074 MBD5Q9P267 1494 aa28.02■■■□□ 2.08
CLIP3-206ENST00000593074 RSPH4AQ5TD94 716 aa28.01■■■□□ 2.07
CLIP3-206ENST00000593074 ANKRD50Q9ULJ7 1429 aa28.01■■■□□ 2.07
CLIP3-206ENST00000593074 ZCCHC11Q5TAX3 1644 aaKnown RBP28■■■□□ 2.07
CLIP3-206ENST00000593074 FOXD1Q16676 465 aa28■■■□□ 2.07
CLIP3-206ENST00000593074 TTC37Q6PGP7 1564 aa28■■■□□ 2.07
CLIP3-206ENST00000593074 SLC4A1APQ9BWU0 796 aaKnown RBP27.99■■■□□ 2.07
CLIP3-206ENST00000593074 OSCARQ8IYS5 282 aa27.99■■■□□ 2.07
CLIP3-206ENST00000593074 TEX14Q8IWB6 1497 aa27.98■■■□□ 2.07
CLIP3-206ENST00000593074 CCDC141Q6ZP82 1450 aa27.95■■■□□ 2.07
CLIP3-206ENST00000593074 ARHGAP5Q13017 1502 aa27.95■■■□□ 2.07
CLIP3-206ENST00000593074 DDX10Q13206 875 aaKnown RBP27.94■■■□□ 2.06
CLIP3-206ENST00000593074 KDM5DQ9BY66 1539 aa27.93■■■□□ 2.06
CLIP3-206ENST00000593074 KIAA1107Q9UPP5 1409 aa27.93■■■□□ 2.06
CLIP3-206ENST00000593074 HIRIP3Q9BW71 556 aaPredicted RBP27.93■■■□□ 2.06
CLIP3-206ENST00000593074 MYO5CQ9NQX4 1742 aa27.92■■■□□ 2.06
CLIP3-206ENST00000593074 L3MBTL2Q969R5 705 aa27.91■■■□□ 2.06
CLIP3-206ENST00000593074 GTF3C3Q9Y5Q9 886 aa27.91■■■□□ 2.06
CLIP3-206ENST00000593074 PLCH2O75038 1416 aa27.88■■■□□ 2.05
CLIP3-206ENST00000593074 KIF15Q9NS87 1388 aa27.88■■■□□ 2.05
CLIP3-206ENST00000593074 MAST1Q9Y2H9 1570 aa27.88■■■□□ 2.05
CLIP3-206ENST00000593074 PLEKHH2Q8IVE3 1493 aa27.88■■■□□ 2.05
CLIP3-206ENST00000593074 SYCP2Q9BX26 1530 aa27.87■■■□□ 2.05
CLIP3-206ENST00000593074 EFCAB2Q5VUJ9 269 aa27.85■■■□□ 2.05
CLIP3-206ENST00000593074 NUP155O75694 1391 aa27.79■■■□□ 2.04
CLIP3-206ENST00000593074 PKD2Q13563 968 aa27.79■■■□□ 2.04
CLIP3-206ENST00000593074 PLXNC1O60486 1568 aa27.78■■■□□ 2.04
CLIP3-206ENST00000593074 HSPA5P11021 654 aaKnown RBP27.77■■■□□ 2.04
CLIP3-206ENST00000593074 WDR7Q9Y4E6 1490 aa27.77■■■□□ 2.04
CLIP3-206ENST00000593074 EIF4G2P78344 907 aaKnown RBP eCLIP27.76■■■□□ 2.03
CLIP3-206ENST00000593074 NBPF8Q3BBV2 869 aa27.74■■■□□ 2.03
CLIP3-206ENST00000593074 ARHGEF12Q9NZN5 1544 aa27.73■■■□□ 2.03
CLIP3-206ENST00000593074 UNC13BO14795 1591 aa27.72■■■□□ 2.03
CLIP3-206ENST00000593074 ARAP3Q8WWN8 1544 aa27.71■■■□□ 2.03
CLIP3-206ENST00000593074 ABCC1P33527 1531 aa27.7■■■□□ 2.02
CLIP3-206ENST00000593074 FAM135AQ9P2D6 1515 aa27.7■■■□□ 2.02
CLIP3-206ENST00000593074 NPM1P06748 294 aaKnown RBP eCLIP27.69■■■□□ 2.02
CLIP3-206ENST00000593074 WASHC2AQ641Q2 1341 aa27.68■■■□□ 2.02
CLIP3-206ENST00000593074 CCER2I3L3R5 266 aa27.68■■■□□ 2.02
CLIP3-206ENST00000593074 ANP32CO43423 234 aa27.68■■■□□ 2.02
CLIP3-206ENST00000593074 SPATA31E1Q6ZUB1 1445 aa27.66■■■□□ 2.02
CLIP3-206ENST00000593074 ASXL2Q76L83 1435 aa27.66■■■□□ 2.02
CLIP3-206ENST00000593074 DUOX2Q9NRD8 1548 aa27.63■■■□□ 2.01
CLIP3-206ENST00000593074 TRAPPC8Q9Y2L5 1435 aa27.63■■■□□ 2.01
CLIP3-206ENST00000593074 POLR1AO95602 1720 aaPredicted RBP27.62■■■□□ 2.01
CLIP3-206ENST00000593074 ABCA9Q8IUA7 1624 aa27.62■■■□□ 2.01
CLIP3-206ENST00000593074 UHRF1BP1Q6BDS2 1440 aa27.61■■■□□ 2.01
CLIP3-206ENST00000593074 IQGAP3Q86VI3 1631 aa27.6■■■□□ 2.01
CLIP3-206ENST00000593074 ERBINQ96RT1 1412 aa27.59■■■□□ 2.01
CLIP3-206ENST00000593074 MAGI2Q86UL8 1455 aa27.59■■■□□ 2.01
CLIP3-206ENST00000593074 SPAG9O60271 1321 aaKnown RBP27.58■■■□□ 2.01
CLIP3-206ENST00000593074 FANCAO15360 1455 aa27.57■■■□□ 2
CLIP3-206ENST00000593074 CCDC7Q96M83 1385 aa27.57■■■□□ 2
CLIP3-206ENST00000593074 AFAP1Q8N556 730 aa27.56■■■□□ 2
CLIP3-206ENST00000593074 CNTLNQ9NXG0 1405 aa27.55■■■□□ 2
CLIP3-206ENST00000593074 RTEL1-TNFRSF6BF6WH68 1400 aa27.55■■■□□ 2
CLIP3-206ENST00000593074 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.54■■■□□ 2
CLIP3-206ENST00000593074 RALGAPBQ86X10 1494 aa27.53■■■□□ 2
CLIP3-206ENST00000593074 KDM5CP41229 1560 aa27.51■■□□□ 1.99
CLIP3-206ENST00000593074 C11orf95C9JLR9 678 aaPredicted RBP27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms