RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 NCOA1Q15788 1441 aa19.18■□□□□ 0.66
CCDC47-206ENST00000584112 FHOD3Q2V2M9 1422 aa19.15■□□□□ 0.66
CCDC47-206ENST00000584112 SRCAPQ6ZRS2 3230 aa19.15■□□□□ 0.66
CCDC47-206ENST00000584112 EFCAB5A4FU69 1503 aa19.12■□□□□ 0.65
CCDC47-206ENST00000584112 ZMYM4Q5VZL5 1548 aa19.12■□□□□ 0.65
CCDC47-206ENST00000584112 SENP3Q9H4L4 574 aaPredicted RBP19.12■□□□□ 0.65
CCDC47-206ENST00000584112 NCKAP5LQ9HCH0 1330 aa19.1■□□□□ 0.65
CCDC47-206ENST00000584112 ATP10BO94823 1461 aa19.09■□□□□ 0.65
CCDC47-206ENST00000584112 CAMSAP1Q5T5Y3 1602 aa19.07■□□□□ 0.64
CCDC47-206ENST00000584112 SETD1AO15047 1707 aaKnown RBP19.06■□□□□ 0.64
CCDC47-206ENST00000584112 HECW1Q76N89 1606 aa19.06■□□□□ 0.64
CCDC47-206ENST00000584112 C3P01024 1663 aa19.05■□□□□ 0.64
CCDC47-206ENST00000584112 TOM1O60784 492 aa19.03■□□□□ 0.64
CCDC47-206ENST00000584112 POTEAQ6S8J7 498 aa19.02■□□□□ 0.64
CCDC47-206ENST00000584112 MAGI2Q86UL8 1455 aa19.01■□□□□ 0.63
CCDC47-206ENST00000584112 ATP10AO60312 1499 aa18.99■□□□□ 0.63
CCDC47-206ENST00000584112 C9orf84Q5VXU9 1444 aa18.97■□□□□ 0.63
CCDC47-206ENST00000584112 TRAPPC8Q9Y2L5 1435 aa18.97■□□□□ 0.63
CCDC47-206ENST00000584112 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
CCDC47-206ENST00000584112 ALKQ9UM73 1620 aa18.96■□□□□ 0.63
CCDC47-206ENST00000584112 CTTNBP2Q8WZ74 1663 aa18.95■□□□□ 0.62
CCDC47-206ENST00000584112 CFAP74Q9C0B2 1584 aa18.92■□□□□ 0.62
CCDC47-206ENST00000584112 GOLGA3Q08378 1498 aa18.91■□□□□ 0.62
CCDC47-206ENST00000584112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
CCDC47-206ENST00000584112 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
CCDC47-206ENST00000584112 PPP6R1Q9UPN7 881 aa18.87■□□□□ 0.61
CCDC47-206ENST00000584112 SCAPERQ9BY12 1400 aa18.85■□□□□ 0.61
CCDC47-206ENST00000584112 P3H3Q8IVL6 736 aa18.84■□□□□ 0.61
CCDC47-206ENST00000584112 UPF1Q92900 1129 aaKnown RBP eCLIP18.84■□□□□ 0.61
CCDC47-206ENST00000584112 PKD2Q13563 968 aa18.83■□□□□ 0.6
CCDC47-206ENST00000584112 TCOF1Q13428 1488 aaKnown RBP18.83■□□□□ 0.6
CCDC47-206ENST00000584112 SUPT6HQ7KZ85 1726 aaKnown RBP18.81■□□□□ 0.6
CCDC47-206ENST00000584112 PTPRKQ15262 1439 aa18.81■□□□□ 0.6
CCDC47-206ENST00000584112 CPS1P31327 1500 aa18.8■□□□□ 0.6
CCDC47-206ENST00000584112 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.8■□□□□ 0.62e-9■■■■□ 23.9
CCDC47-206ENST00000584112 PLA2R1Q13018 1463 aa18.79■□□□□ 0.6
CCDC47-206ENST00000584112 PRXQ9BXM0 1461 aa18.79■□□□□ 0.6
CCDC47-206ENST00000584112 ESF1Q9H501 851 aaKnown RBP18.79■□□□□ 0.6
CCDC47-206ENST00000584112 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.59
CCDC47-206ENST00000584112 RAPGEF6Q8TEU7 1601 aa18.74■□□□□ 0.59
CCDC47-206ENST00000584112 ZNF142P52746 1687 aaPredicted RBP18.73■□□□□ 0.59
CCDC47-206ENST00000584112 DIP2CQ9Y2E4 1556 aa18.72■□□□□ 0.59
CCDC47-206ENST00000584112 NPATQ14207 1427 aa18.72■□□□□ 0.59
CCDC47-206ENST00000584112 MYO3AQ8NEV4 1616 aa18.71■□□□□ 0.59
CCDC47-206ENST00000584112 CEP170BQ9Y4F5 1589 aaPredicted RBP18.69■□□□□ 0.58
CCDC47-206ENST00000584112 EEA1Q15075 1411 aa18.69■□□□□ 0.58
CCDC47-206ENST00000584112 MYT1LQ9UL68 1186 aa18.69■□□□□ 0.58
CCDC47-206ENST00000584112 NUP153P49790 1475 aaKnown RBP18.69■□□□□ 0.58
CCDC47-206ENST00000584112 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
CCDC47-206ENST00000584112 PLEKHD1A6NEE1 506 aa18.67■□□□□ 0.58
CCDC47-206ENST00000584112 AFAP1Q8N556 730 aa18.67■□□□□ 0.58
CCDC47-206ENST00000584112 AGLP35573 1532 aa18.67■□□□□ 0.58
CCDC47-206ENST00000584112 ABCA6Q8N139 1617 aa18.67■□□□□ 0.58
CCDC47-206ENST00000584112 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
CCDC47-206ENST00000584112 CNTLNQ9NXG0 1405 aa18.66■□□□□ 0.58
CCDC47-206ENST00000584112 VWDEQ8N2E2 1590 aa18.65■□□□□ 0.58
CCDC47-206ENST00000584112 REREQ9P2R6 1566 aa18.65■□□□□ 0.58
CCDC47-206ENST00000584112 NEURL4Q96JN8 1562 aa18.64■□□□□ 0.58
CCDC47-206ENST00000584112 ZMYM3Q14202 1370 aa18.64■□□□□ 0.57
CCDC47-206ENST00000584112 MROH2AA6NES4 1674 aa18.62■□□□□ 0.57
CCDC47-206ENST00000584112 POLR1AO95602 1720 aaPredicted RBP18.61■□□□□ 0.57
CCDC47-206ENST00000584112 KDM5CP41229 1560 aa18.61■□□□□ 0.57
CCDC47-206ENST00000584112 PLCH2O75038 1416 aa18.61■□□□□ 0.57
CCDC47-206ENST00000584112 TRIM52Q96A61 297 aa18.61■□□□□ 0.57
CCDC47-206ENST00000584112 SAMD9Q5K651 1589 aa18.59■□□□□ 0.57
CCDC47-206ENST00000584112 ZNF518AQ6AHZ1 1483 aa18.59■□□□□ 0.57
CCDC47-206ENST00000584112 STRCP1A6NGW2 1772 aa18.58■□□□□ 0.57
CCDC47-206ENST00000584112 RNF17Q9BXT8 1623 aaKnown RBP18.58■□□□□ 0.56
CCDC47-206ENST00000584112 LRRC7Q96NW7 1537 aa18.56■□□□□ 0.56
CCDC47-206ENST00000584112 DNMT1P26358 1616 aaKnown RBP18.55■□□□□ 0.56
CCDC47-206ENST00000584112 EFCAB2Q5VUJ9 269 aa18.54■□□□□ 0.56
CCDC47-206ENST00000584112 CLTCQ00610 1675 aaKnown RBP18.53■□□□□ 0.56
CCDC47-206ENST00000584112 A2ML1A8K2U0 1454 aa18.5■□□□□ 0.55
CCDC47-206ENST00000584112 MYO5CQ9NQX4 1742 aa18.49■□□□□ 0.55
CCDC47-206ENST00000584112 MLH3Q9UHC1 1453 aa18.48■□□□□ 0.55
CCDC47-206ENST00000584112 SETBP1Q9Y6X0 1596 aa18.46■□□□□ 0.55
CCDC47-206ENST00000584112 CDK13Q14004 1512 aaKnown RBP18.43■□□□□ 0.54
CCDC47-206ENST00000584112 SYNMO15061 1565 aa18.42■□□□□ 0.54
CCDC47-206ENST00000584112 KIDINS220Q9ULH0 1771 aa18.42■□□□□ 0.54
CCDC47-206ENST00000584112 NPHP4O75161 1426 aaPredicted RBP18.42■□□□□ 0.54
CCDC47-206ENST00000584112 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.41■□□□□ 0.54
CCDC47-206ENST00000584112 ARHGAP5Q13017 1502 aa18.4■□□□□ 0.54
CCDC47-206ENST00000584112 ANKLE2Q86XL3 938 aa18.4■□□□□ 0.54
CCDC47-206ENST00000584112 FAM135BQ49AJ0 1406 aa18.4■□□□□ 0.54
CCDC47-206ENST00000584112 XIRP1Q702N8 1843 aaKnown RBP18.39■□□□□ 0.54
CCDC47-206ENST00000584112 RANGAP1P46060 587 aaPredicted RBP18.38■□□□□ 0.53
CCDC47-206ENST00000584112 ITSN2Q9NZM3 1697 aa18.37■□□□□ 0.53
CCDC47-206ENST00000584112 IQGAP1P46940 1657 aa18.36■□□□□ 0.53
CCDC47-206ENST00000584112 ROBO1Q9Y6N7 1651 aa18.35■□□□□ 0.53
CCDC47-206ENST00000584112 MED14O60244 1454 aa18.35■□□□□ 0.53
CCDC47-206ENST00000584112 KIF14Q15058 1648 aa18.34■□□□□ 0.53
CCDC47-206ENST00000584112 ABCC1P33527 1531 aa18.34■□□□□ 0.53
CCDC47-206ENST00000584112 RXRBP28702 533 aa18.34■□□□□ 0.53
CCDC47-206ENST00000584112 RBM33Q96EV2 1170 aaKnown RBP18.34■□□□□ 0.53
CCDC47-206ENST00000584112 ZRANB1Q9UGI0 708 aa18.34■□□□□ 0.53
CCDC47-206ENST00000584112 LRP6O75581 1613 aa18.34■□□□□ 0.53
CCDC47-206ENST00000584112 DEPDC5O75140 1603 aa18.32■□□□□ 0.52
CCDC47-206ENST00000584112 UBTFP17480 764 aaKnown RBP18.32■□□□□ 0.52
CCDC47-206ENST00000584112 ZNF772Q68DY9 489 aaPredicted RBP18.32■□□□□ 0.52
CCDC47-206ENST00000584112 IFFO2Q5TF58 517 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms