RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 TTC37Q6PGP7 1564 aa17.49■□□□□ 0.39
RFFL-209ENST00000581265 CFAP74Q9C0B2 1584 aa17.49■□□□□ 0.39
RFFL-209ENST00000581265 RICTORQ6R327 1708 aa17.48■□□□□ 0.39
RFFL-209ENST00000581265 MAGI2Q86UL8 1455 aa17.46■□□□□ 0.39
RFFL-209ENST00000581265 MLECQ14165 292 aa17.46■□□□□ 0.39
RFFL-209ENST00000581265 EFCAB2Q5VUJ9 269 aa17.46■□□□□ 0.39
RFFL-209ENST00000581265 ARHGEF40Q8TER5 1519 aa17.46■□□□□ 0.39
RFFL-209ENST00000581265 DMRT2Q9Y5R5 561 aa17.45■□□□□ 0.38
RFFL-209ENST00000581265 ZMYM4Q5VZL5 1548 aa17.45■□□□□ 0.38
RFFL-209ENST00000581265 SCAPERQ9BY12 1400 aa17.45■□□□□ 0.38
RFFL-209ENST00000581265 HECW1Q76N89 1606 aa17.43■□□□□ 0.38
RFFL-209ENST00000581265 YEATS2Q9ULM3 1422 aa17.43■□□□□ 0.38
RFFL-209ENST00000581265 SPATA31D1Q6ZQQ2 1576 aa17.41■□□□□ 0.38
RFFL-209ENST00000581265 ZFYVE16Q7Z3T8 1539 aa17.41■□□□□ 0.38
RFFL-209ENST00000581265 TROQ12816 1431 aaPredicted RBP17.39■□□□□ 0.38
RFFL-209ENST00000581265 CLIP1P30622 1438 aa17.36■□□□□ 0.37
RFFL-209ENST00000581265 ATP10AO60312 1499 aa17.36■□□□□ 0.37
RFFL-209ENST00000581265 KIF14Q15058 1648 aa17.34■□□□□ 0.37
RFFL-209ENST00000581265 AFAP1Q8N556 730 aa17.34■□□□□ 0.37
RFFL-209ENST00000581265 MYO5CQ9NQX4 1742 aa17.34■□□□□ 0.37
RFFL-209ENST00000581265 SIGLEC1Q9BZZ2 1709 aa17.33■□□□□ 0.37
RFFL-209ENST00000581265 CASKIN1Q8WXD9 1431 aa17.33■□□□□ 0.36
RFFL-209ENST00000581265 ZNF518AQ6AHZ1 1483 aa17.31■□□□□ 0.36
RFFL-209ENST00000581265 C9orf84Q5VXU9 1444 aa17.31■□□□□ 0.36
RFFL-209ENST00000581265 ARHGAP5Q13017 1502 aa17.31■□□□□ 0.36
RFFL-209ENST00000581265 CEBPAP49715 358 aaPredicted RBP17.3■□□□□ 0.36
RFFL-209ENST00000581265 FER1L4A9Z1Z3 1794 aa17.3■□□□□ 0.36
RFFL-209ENST00000581265 LRRIQ1Q96JM4 1722 aa17.29■□□□□ 0.36
RFFL-209ENST00000581265 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
RFFL-209ENST00000581265 ARHGEF12Q9NZN5 1544 aa17.27■□□□□ 0.36
RFFL-209ENST00000581265 PREX1Q8TCU6 1659 aa17.27■□□□□ 0.36
RFFL-209ENST00000581265 UHRF1BP1Q6BDS2 1440 aa17.27■□□□□ 0.35
RFFL-209ENST00000581265 KDM5CP41229 1560 aa17.27■□□□□ 0.35
RFFL-209ENST00000581265 MYT1LQ9UL68 1186 aa17.25■□□□□ 0.35
RFFL-209ENST00000581265 MLH3Q9UHC1 1453 aa17.24■□□□□ 0.35
RFFL-209ENST00000581265 CDC42BPBQ9Y5S2 1711 aa17.24■□□□□ 0.35
RFFL-209ENST00000581265 TRAPPC8Q9Y2L5 1435 aa17.22■□□□□ 0.35
RFFL-209ENST00000581265 FYCO1Q9BQS8 1478 aa17.22■□□□□ 0.35
RFFL-209ENST00000581265 PTPRTO14522 1441 aa17.21■□□□□ 0.35
RFFL-209ENST00000581265 ESF1Q9H501 851 aaKnown RBP17.21■□□□□ 0.35
RFFL-209ENST00000581265 REREQ9P2R6 1566 aa17.2■□□□□ 0.34
RFFL-209ENST00000581265 PREX2Q70Z35 1606 aa17.2■□□□□ 0.34
RFFL-209ENST00000581265 STRCQ7RTU9 1775 aa17.2■□□□□ 0.34
RFFL-209ENST00000581265 DIP2CQ9Y2E4 1556 aa17.19■□□□□ 0.34
RFFL-209ENST00000581265 ABCC1P33527 1531 aa17.18■□□□□ 0.34
RFFL-209ENST00000581265 AGLP35573 1532 aa17.16■□□□□ 0.34
RFFL-209ENST00000581265 GPATCH8Q9UKJ3 1502 aaKnown RBP17.16■□□□□ 0.34
RFFL-209ENST00000581265 UBAP1LF5GYI3 381 aa17.16■□□□□ 0.34
RFFL-209ENST00000581265 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
RFFL-209ENST00000581265 SETD1BQ9UPS6 1966 aaKnown RBP17.16■□□□□ 0.34
RFFL-209ENST00000581265 IQSEC2Q5JU85 1478 aa17.16■□□□□ 0.34
RFFL-209ENST00000581265 CDC42BPAQ5VT25 1732 aa17.15■□□□□ 0.34
RFFL-209ENST00000581265 ABCA6Q8N139 1617 aa17.14■□□□□ 0.33
RFFL-209ENST00000581265 ITSN2Q9NZM3 1697 aa17.13■□□□□ 0.33
RFFL-209ENST00000581265 HNRNPMP52272 730 aaKnown RBP eCLIP17.13■□□□□ 0.332e-6■■■■□ 21.2
RFFL-209ENST00000581265 CFDP1Q9UEE9 299 aaPredicted RBP17.13■□□□□ 0.33
RFFL-209ENST00000581265 KIDINS220Q9ULH0 1771 aa17.12■□□□□ 0.33
RFFL-209ENST00000581265 KIAA1107Q9UPP5 1409 aa17.12■□□□□ 0.33
RFFL-209ENST00000581265 LTBP4Q8N2S1 1624 aa17.11■□□□□ 0.33
RFFL-209ENST00000581265 SPAG9O60271 1321 aaKnown RBP17.11■□□□□ 0.33
RFFL-209ENST00000581265 SAMD9LQ8IVG5 1584 aa17.1■□□□□ 0.33
RFFL-209ENST00000581265 MTUS2Q5JR59 1369 aa17.09■□□□□ 0.33
RFFL-209ENST00000581265 CCNB3Q8WWL7 1395 aa17.09■□□□□ 0.33
RFFL-209ENST00000581265 CNTLNQ9NXG0 1405 aa17.09■□□□□ 0.33
RFFL-209ENST00000581265 PLEKHH2Q8IVE3 1493 aa17.08■□□□□ 0.32
RFFL-209ENST00000581265 SYCP2Q9BX26 1530 aa17.06■□□□□ 0.32
RFFL-209ENST00000581265 SCAF1Q9H7N4 1312 aaKnown RBP17.06■□□□□ 0.32
RFFL-209ENST00000581265 C3P01024 1663 aa17.05■□□□□ 0.32
RFFL-209ENST00000581265 NCOA1Q15788 1441 aa17.04■□□□□ 0.32
RFFL-209ENST00000581265 ZMYM3Q14202 1370 aa17.03■□□□□ 0.32
RFFL-209ENST00000581265 ZNF335Q9H4Z2 1342 aaPredicted RBP17.02■□□□□ 0.32
RFFL-209ENST00000581265 ZNF644Q9H582 1327 aaPredicted RBP17.02■□□□□ 0.32
RFFL-209ENST00000581265 ATP7AQ04656 1500 aa17.01■□□□□ 0.31
RFFL-209ENST00000581265 NCKAP5LQ9HCH0 1330 aa17.01■□□□□ 0.31
RFFL-209ENST00000581265 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
RFFL-209ENST00000581265 PPP6R1Q9UPN7 881 aa17.01■□□□□ 0.31
RFFL-209ENST00000581265 NPATQ14207 1427 aa17.01■□□□□ 0.31
RFFL-209ENST00000581265 A2MP01023 1474 aa17■□□□□ 0.31
RFFL-209ENST00000581265 CEP162Q5TB80 1403 aa16.99■□□□□ 0.31
RFFL-209ENST00000581265 MBD5Q9P267 1494 aa16.99■□□□□ 0.31
RFFL-209ENST00000581265 INO80Q9ULG1 1556 aaPredicted RBP16.98■□□□□ 0.31
RFFL-209ENST00000581265 PIP4K2BP78356 416 aa16.98■□□□□ 0.31
RFFL-209ENST00000581265 GGT6Q6P531 493 aa16.98■□□□□ 0.31
RFFL-209ENST00000581265 CAMSAP1Q5T5Y3 1602 aa16.98■□□□□ 0.31
RFFL-209ENST00000581265 PLXNC1O60486 1568 aa16.98■□□□□ 0.31
RFFL-209ENST00000581265 EHBP1L1Q8N3D4 1523 aa16.97■□□□□ 0.31
RFFL-209ENST00000581265 MROH2AA6NES4 1674 aa16.97■□□□□ 0.31
RFFL-209ENST00000581265 RTEL1-TNFRSF6BF6WH68 1400 aa16.96■□□□□ 0.31
RFFL-209ENST00000581265 SUPT6HQ7KZ85 1726 aaKnown RBP16.96■□□□□ 0.31
RFFL-209ENST00000581265 HSPA1LP34931 641 aa16.96■□□□□ 0.31
RFFL-209ENST00000581265 TIAM1Q13009 1591 aa16.96■□□□□ 0.31
RFFL-209ENST00000581265 PKD2Q13563 968 aa16.95■□□□□ 0.3
RFFL-209ENST00000581265 RSPH4AQ5TD94 716 aa16.95■□□□□ 0.3
RFFL-209ENST00000581265 DHX29Q7Z478 1369 aaKnown RBP16.93■□□□□ 0.3
RFFL-209ENST00000581265 TOM1O60784 492 aa16.93■□□□□ 0.3
RFFL-209ENST00000581265 PTPRKQ15262 1439 aa16.93■□□□□ 0.3
RFFL-209ENST00000581265 MED1Q15648 1581 aaPredicted RBP16.93■□□□□ 0.3
RFFL-209ENST00000581265 NCOA2Q15596 1464 aa16.91■□□□□ 0.3
RFFL-209ENST00000581265 ADGBQ8N7X0 1667 aa16.91■□□□□ 0.3
RFFL-209ENST00000581265 CLTCQ00610 1675 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms