RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 TTC37Q6PGP7 1564 aa16.55■□□□□ 0.24
RFFL-208ENST00000581039 CDK11AQ9UQ88 783 aaPredicted RBP16.53■□□□□ 0.24
RFFL-208ENST00000581039 HECW1Q76N89 1606 aa16.52■□□□□ 0.24
RFFL-208ENST00000581039 CDK13Q14004 1512 aaKnown RBP16.51■□□□□ 0.23
RFFL-208ENST00000581039 ATP10AO60312 1499 aa16.51■□□□□ 0.23
RFFL-208ENST00000581039 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
RFFL-208ENST00000581039 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
RFFL-208ENST00000581039 MYT1LQ9UL68 1186 aa16.49■□□□□ 0.23
RFFL-208ENST00000581039 SIGLEC1Q9BZZ2 1709 aa16.48■□□□□ 0.23
RFFL-208ENST00000581039 CEBPAP49715 358 aaPredicted RBP16.48■□□□□ 0.23
RFFL-208ENST00000581039 C9orf84Q5VXU9 1444 aa16.47■□□□□ 0.23
RFFL-208ENST00000581039 DMRT2Q9Y5R5 561 aa16.47■□□□□ 0.23
RFFL-208ENST00000581039 FMN1Q68DA7 1419 aa16.46■□□□□ 0.23
RFFL-208ENST00000581039 AFAP1Q8N556 730 aa16.46■□□□□ 0.23
RFFL-208ENST00000581039 FER1L4A9Z1Z3 1794 aa16.45■□□□□ 0.22
RFFL-208ENST00000581039 ARHGEF12Q9NZN5 1544 aa16.44■□□□□ 0.22
RFFL-208ENST00000581039 ZNF518AQ6AHZ1 1483 aa16.42■□□□□ 0.22
RFFL-208ENST00000581039 ESF1Q9H501 851 aaKnown RBP16.4■□□□□ 0.22
RFFL-208ENST00000581039 ARHGAP5Q13017 1502 aa16.4■□□□□ 0.22
RFFL-208ENST00000581039 MYO5CQ9NQX4 1742 aa16.39■□□□□ 0.21
RFFL-208ENST00000581039 CLIP1P30622 1438 aa16.39■□□□□ 0.21
RFFL-208ENST00000581039 TROQ12816 1431 aaPredicted RBP16.39■□□□□ 0.21
RFFL-208ENST00000581039 UHRF1BP1Q6BDS2 1440 aa16.38■□□□□ 0.21
RFFL-208ENST00000581039 ARHGAP35Q9NRY4 1499 aa16.38■□□□□ 0.21
RFFL-208ENST00000581039 PREX1Q8TCU6 1659 aa16.37■□□□□ 0.21
RFFL-208ENST00000581039 KIF14Q15058 1648 aa16.37■□□□□ 0.21
RFFL-208ENST00000581039 KDM5CP41229 1560 aa16.34■□□□□ 0.21
RFFL-208ENST00000581039 SETD1BQ9UPS6 1966 aaKnown RBP16.33■□□□□ 0.21
RFFL-208ENST00000581039 MLH3Q9UHC1 1453 aa16.33■□□□□ 0.2
RFFL-208ENST00000581039 DISP3Q9P2K9 1392 aa16.32■□□□□ 0.2
RFFL-208ENST00000581039 DIP2CQ9Y2E4 1556 aa16.3■□□□□ 0.2
RFFL-208ENST00000581039 STRCQ7RTU9 1775 aa16.3■□□□□ 0.2
RFFL-208ENST00000581039 REREQ9P2R6 1566 aa16.3■□□□□ 0.2
RFFL-208ENST00000581039 PTPRTO14522 1441 aa16.29■□□□□ 0.2
RFFL-208ENST00000581039 TRAPPC8Q9Y2L5 1435 aa16.29■□□□□ 0.2
RFFL-208ENST00000581039 ILDR2Q71H61 639 aa16.27■□□□□ 0.2
RFFL-208ENST00000581039 ZNF777Q9ULD5 760 aaPredicted RBP16.27■□□□□ 0.2
RFFL-208ENST00000581039 AGLP35573 1532 aa16.27■□□□□ 0.2
RFFL-208ENST00000581039 CNTLNQ9NXG0 1405 aa16.26■□□□□ 0.19
RFFL-208ENST00000581039 ABCA6Q8N139 1617 aa16.26■□□□□ 0.19
RFFL-208ENST00000581039 CDC42BPBQ9Y5S2 1711 aa16.25■□□□□ 0.19
RFFL-208ENST00000581039 CHIC1Q5VXU3 224 aa16.25■□□□□ 0.19
RFFL-208ENST00000581039 CASKIN1Q8WXD9 1431 aa16.25■□□□□ 0.19
RFFL-208ENST00000581039 CCDC18Q5T9S5 1454 aa16.24■□□□□ 0.19
RFFL-208ENST00000581039 SOCS7O14512 581 aa16.24■□□□□ 0.19
RFFL-208ENST00000581039 ABCC1P33527 1531 aa16.24■□□□□ 0.19
RFFL-208ENST00000581039 C3P01024 1663 aa16.24■□□□□ 0.19
RFFL-208ENST00000581039 PREX2Q70Z35 1606 aa16.22■□□□□ 0.19
RFFL-208ENST00000581039 LRRIQ1Q96JM4 1722 aa16.22■□□□□ 0.19
RFFL-208ENST00000581039 SPAG9O60271 1321 aaKnown RBP16.21■□□□□ 0.19
RFFL-208ENST00000581039 HNRNPMP52272 730 aaKnown RBP eCLIP16.21■□□□□ 0.19
RFFL-208ENST00000581039 ZMYM3Q14202 1370 aa16.21■□□□□ 0.19
RFFL-208ENST00000581039 NCOA1Q15788 1441 aa16.2■□□□□ 0.18
RFFL-208ENST00000581039 ITSN2Q9NZM3 1697 aa16.19■□□□□ 0.18
RFFL-208ENST00000581039 NPATQ14207 1427 aa16.19■□□□□ 0.18
RFFL-208ENST00000581039 KIDINS220Q9ULH0 1771 aa16.18■□□□□ 0.18
RFFL-208ENST00000581039 LTBP4Q8N2S1 1624 aa16.18■□□□□ 0.18
RFFL-208ENST00000581039 NCKAP5LQ9HCH0 1330 aa16.18■□□□□ 0.18
RFFL-208ENST00000581039 CFDP1Q9UEE9 299 aaPredicted RBP16.17■□□□□ 0.18
RFFL-208ENST00000581039 IQSEC2Q5JU85 1478 aa16.16■□□□□ 0.18
RFFL-208ENST00000581039 SAMD9LQ8IVG5 1584 aa16.16■□□□□ 0.18
RFFL-208ENST00000581039 PKD2Q13563 968 aa16.15■□□□□ 0.18
RFFL-208ENST00000581039 GGT6Q6P531 493 aa16.15■□□□□ 0.18
RFFL-208ENST00000581039 CAMSAP1Q5T5Y3 1602 aa16.15■□□□□ 0.18
RFFL-208ENST00000581039 GPATCH8Q9UKJ3 1502 aaKnown RBP16.14■□□□□ 0.18
RFFL-208ENST00000581039 CDC42BPAQ5VT25 1732 aa16.14■□□□□ 0.17
RFFL-208ENST00000581039 UBAP1LF5GYI3 381 aa16.13■□□□□ 0.17
RFFL-208ENST00000581039 FYCO1Q9BQS8 1478 aa16.13■□□□□ 0.17
RFFL-208ENST00000581039 SYCP2Q9BX26 1530 aa16.13■□□□□ 0.17
RFFL-208ENST00000581039 ZNF335Q9H4Z2 1342 aaPredicted RBP16.13■□□□□ 0.17
RFFL-208ENST00000581039 KIAA1107Q9UPP5 1409 aa16.12■□□□□ 0.17
RFFL-208ENST00000581039 PPP6R1Q9UPN7 881 aa16.12■□□□□ 0.17
RFFL-208ENST00000581039 CCNB3Q8WWL7 1395 aa16.12■□□□□ 0.17
RFFL-208ENST00000581039 PLEKHH2Q8IVE3 1493 aa16.11■□□□□ 0.17
RFFL-208ENST00000581039 SPATA31D1Q6ZQQ2 1576 aa16.11■□□□□ 0.17
RFFL-208ENST00000581039 MROH2AA6NES4 1674 aa16.11■□□□□ 0.17
RFFL-208ENST00000581039 A2MP01023 1474 aa16.1■□□□□ 0.17
RFFL-208ENST00000581039 SUPT6HQ7KZ85 1726 aaKnown RBP16.1■□□□□ 0.17
RFFL-208ENST00000581039 ATP7AQ04656 1500 aa16.09■□□□□ 0.17
RFFL-208ENST00000581039 PTPRKQ15262 1439 aa16.08■□□□□ 0.16
RFFL-208ENST00000581039 PLA2R1Q13018 1463 aa16.07■□□□□ 0.16
RFFL-208ENST00000581039 MTUS2Q5JR59 1369 aa16.06■□□□□ 0.16
RFFL-208ENST00000581039 CLTCQ00610 1675 aaKnown RBP16.05■□□□□ 0.16
RFFL-208ENST00000581039 ZNF644Q9H582 1327 aaPredicted RBP16.04■□□□□ 0.16
RFFL-208ENST00000581039 PLXNC1O60486 1568 aa16.04■□□□□ 0.16
RFFL-208ENST00000581039 TCOF1Q13428 1488 aaKnown RBP16.03■□□□□ 0.16
RFFL-208ENST00000581039 INO80Q9ULG1 1556 aaPredicted RBP16.03■□□□□ 0.16
RFFL-208ENST00000581039 CEP170BQ9Y4F5 1589 aaPredicted RBP16.03■□□□□ 0.16
RFFL-208ENST00000581039 MYO3AQ8NEV4 1616 aa16.02■□□□□ 0.16
RFFL-208ENST00000581039 DHX29Q7Z478 1369 aaKnown RBP16■□□□□ 0.15
RFFL-208ENST00000581039 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
RFFL-208ENST00000581039 ZNF142P52746 1687 aaPredicted RBP16■□□□□ 0.15
RFFL-208ENST00000581039 A2ML1A8K2U0 1454 aa15.99■□□□□ 0.15
RFFL-208ENST00000581039 KIF3BO15066 747 aa15.99■□□□□ 0.15
RFFL-208ENST00000581039 TOM1O60784 492 aa15.99■□□□□ 0.15
RFFL-208ENST00000581039 FBXO31Q5XUX0 539 aaPredicted RBP15.99■□□□□ 0.15
RFFL-208ENST00000581039 RTEL1-TNFRSF6BF6WH68 1400 aa15.99■□□□□ 0.15
RFFL-208ENST00000581039 PIP4K2BP78356 416 aa15.98■□□□□ 0.15
RFFL-208ENST00000581039 ADGBQ8N7X0 1667 aa15.98■□□□□ 0.15
RFFL-208ENST00000581039 MBD5Q9P267 1494 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms