RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 MAPK8IP2Q13387 824 aaPredicted RBP18.16■□□□□ 0.5
TOP3A-210ENST00000580713 EFCAB5A4FU69 1503 aa18.16■□□□□ 0.5
TOP3A-210ENST00000580713 SAMD9Q5K651 1589 aa18.16■□□□□ 0.5
TOP3A-210ENST00000580713 CFAP74Q9C0B2 1584 aa18.16■□□□□ 0.5
TOP3A-210ENST00000580713 DMRT2Q9Y5R5 561 aa18.15■□□□□ 0.5
TOP3A-210ENST00000580713 ZMYM4Q5VZL5 1548 aa18.13■□□□□ 0.49
TOP3A-210ENST00000580713 CEBPAP49715 358 aaPredicted RBP18.13■□□□□ 0.49
TOP3A-210ENST00000580713 MAGI2Q86UL8 1455 aa18.13■□□□□ 0.49
TOP3A-210ENST00000580713 FER1L4A9Z1Z3 1794 aa18.12■□□□□ 0.49
TOP3A-210ENST00000580713 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.12■□□□□ 0.49
TOP3A-210ENST00000580713 SIGLEC1Q9BZZ2 1709 aa18.12■□□□□ 0.49
TOP3A-210ENST00000580713 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
TOP3A-210ENST00000580713 HECW1Q76N89 1606 aa18.1■□□□□ 0.49
TOP3A-210ENST00000580713 TTC37Q6PGP7 1564 aa18.1■□□□□ 0.49
TOP3A-210ENST00000580713 SCAPERQ9BY12 1400 aa18.1■□□□□ 0.49
TOP3A-210ENST00000580713 ATP10AO60312 1499 aa18.07■□□□□ 0.48
TOP3A-210ENST00000580713 PREX1Q8TCU6 1659 aa18.06■□□□□ 0.48
TOP3A-210ENST00000580713 MYT1LQ9UL68 1186 aa18.06■□□□□ 0.48
TOP3A-210ENST00000580713 UHRF1BP1Q6BDS2 1440 aa18.06■□□□□ 0.48
TOP3A-210ENST00000580713 ARHGEF12Q9NZN5 1544 aa18.05■□□□□ 0.48
TOP3A-210ENST00000580713 C9orf84Q5VXU9 1444 aa18.05■□□□□ 0.48
TOP3A-210ENST00000580713 SPATA31D1Q6ZQQ2 1576 aa18.04■□□□□ 0.48
TOP3A-210ENST00000580713 PLCH2O75038 1416 aa18.02■□□□□ 0.48
TOP3A-210ENST00000580713 EFCAB2Q5VUJ9 269 aa18.02■□□□□ 0.48
TOP3A-210ENST00000580713 ATP1B4Q9UN42 357 aaPredicted RBP18.01■□□□□ 0.47
TOP3A-210ENST00000580713 STRCQ7RTU9 1775 aa18.01■□□□□ 0.47
TOP3A-210ENST00000580713 CDK13Q14004 1512 aaKnown RBP17.98■□□□□ 0.47
TOP3A-210ENST00000580713 ESF1Q9H501 851 aaKnown RBP17.98■□□□□ 0.47
TOP3A-210ENST00000580713 PTPRTO14522 1441 aa17.98■□□□□ 0.47
TOP3A-210ENST00000580713 SETD1BQ9UPS6 1966 aaKnown RBP17.96■□□□□ 0.47
TOP3A-210ENST00000580713 AFAP1Q8N556 730 aa17.95■□□□□ 0.46
TOP3A-210ENST00000580713 PPP4R3CPQ6ZMV5 832 aa17.92■□□□□ 0.46
TOP3A-210ENST00000580713 CDK11AQ9UQ88 783 aaPredicted RBP17.92■□□□□ 0.46
TOP3A-210ENST00000580713 ZNF518AQ6AHZ1 1483 aa17.92■□□□□ 0.46
TOP3A-210ENST00000580713 MYO5CQ9NQX4 1742 aa17.89■□□□□ 0.45
TOP3A-210ENST00000580713 LTBP4Q8N2S1 1624 aa17.88■□□□□ 0.45
TOP3A-210ENST00000580713 SCAF1Q9H7N4 1312 aaKnown RBP17.88■□□□□ 0.45
TOP3A-210ENST00000580713 TRAPPC8Q9Y2L5 1435 aa17.88■□□□□ 0.45
TOP3A-210ENST00000580713 ARHGAP5Q13017 1502 aa17.88■□□□□ 0.45
TOP3A-210ENST00000580713 UBAP1LF5GYI3 381 aa17.87■□□□□ 0.45
TOP3A-210ENST00000580713 EEA1Q15075 1411 aa17.87■□□□□ 0.45
TOP3A-210ENST00000580713 IQSEC2Q5JU85 1478 aa17.87■□□□□ 0.45
TOP3A-210ENST00000580713 C3P01024 1663 aa17.85■□□□□ 0.45
TOP3A-210ENST00000580713 KDM5CP41229 1560 aa17.84■□□□□ 0.45
TOP3A-210ENST00000580713 DIP2CQ9Y2E4 1556 aa17.84■□□□□ 0.45
TOP3A-210ENST00000580713 NCOA1Q15788 1441 aa17.84■□□□□ 0.45
TOP3A-210ENST00000580713 EHMT2Q96KQ7 1210 aa17.84■□□□□ 0.45
TOP3A-210ENST00000580713 KIF14Q15058 1648 aa17.82■□□□□ 0.44
TOP3A-210ENST00000580713 CLIP1P30622 1438 aa17.81■□□□□ 0.44
TOP3A-210ENST00000580713 NCKAP5LQ9HCH0 1330 aa17.81■□□□□ 0.44
TOP3A-210ENST00000580713 TROQ12816 1431 aaPredicted RBP17.81■□□□□ 0.44
TOP3A-210ENST00000580713 FMN1Q68DA7 1419 aa17.81■□□□□ 0.44
TOP3A-210ENST00000580713 ZNF335Q9H4Z2 1342 aaPredicted RBP17.8■□□□□ 0.44
TOP3A-210ENST00000580713 REREQ9P2R6 1566 aa17.8■□□□□ 0.44
TOP3A-210ENST00000580713 MLH3Q9UHC1 1453 aa17.8■□□□□ 0.44
TOP3A-210ENST00000580713 CNTLNQ9NXG0 1405 aa17.8■□□□□ 0.44
TOP3A-210ENST00000580713 UBTFP17480 764 aaKnown RBP17.79■□□□□ 0.44
TOP3A-210ENST00000580713 ABCA6Q8N139 1617 aa17.79■□□□□ 0.44
TOP3A-210ENST00000580713 AGLP35573 1532 aa17.78■□□□□ 0.44
TOP3A-210ENST00000580713 CAMSAP1Q5T5Y3 1602 aa17.78■□□□□ 0.44
TOP3A-210ENST00000580713 NPATQ14207 1427 aa17.73■□□□□ 0.43
TOP3A-210ENST00000580713 ZMYM3Q14202 1370 aa17.73■□□□□ 0.43
TOP3A-210ENST00000580713 PKD2Q13563 968 aa17.72■□□□□ 0.43
TOP3A-210ENST00000580713 CDC42BPBQ9Y5S2 1711 aa17.7■□□□□ 0.42
TOP3A-210ENST00000580713 PIP4K2BP78356 416 aa17.7■□□□□ 0.42
TOP3A-210ENST00000580713 ZNF777Q9ULD5 760 aaPredicted RBP17.7■□□□□ 0.42
TOP3A-210ENST00000580713 ABCC1P33527 1531 aa17.7■□□□□ 0.42
TOP3A-210ENST00000580713 ARHGAP35Q9NRY4 1499 aa17.69■□□□□ 0.42
TOP3A-210ENST00000580713 KIDINS220Q9ULH0 1771 aa17.67■□□□□ 0.42
TOP3A-210ENST00000580713 HSPA1LP34931 641 aa17.67■□□□□ 0.42
TOP3A-210ENST00000580713 ITSN2Q9NZM3 1697 aa17.67■□□□□ 0.42
TOP3A-210ENST00000580713 SPAG9O60271 1321 aaKnown RBP17.67■□□□□ 0.42
TOP3A-210ENST00000580713 PREX2Q70Z35 1606 aa17.65■□□□□ 0.42
TOP3A-210ENST00000580713 MROH2AA6NES4 1674 aa17.65■□□□□ 0.42
TOP3A-210ENST00000580713 GGT6Q6P531 493 aa17.65■□□□□ 0.42
TOP3A-210ENST00000580713 PLA2R1Q13018 1463 aa17.64■□□□□ 0.41
TOP3A-210ENST00000580713 TOM1O60784 492 aa17.64■□□□□ 0.41
TOP3A-210ENST00000580713 KCNA4P22459 653 aa17.64■□□□□ 0.41
TOP3A-210ENST00000580713 HNRNPMP52272 730 aaKnown RBP eCLIP17.63■□□□□ 0.41
TOP3A-210ENST00000580713 TCOF1Q13428 1488 aaKnown RBP17.62■□□□□ 0.41
TOP3A-210ENST00000580713 MED1Q15648 1581 aaPredicted RBP17.62■□□□□ 0.41
TOP3A-210ENST00000580713 SAMD9LQ8IVG5 1584 aa17.62■□□□□ 0.41
TOP3A-210ENST00000580713 SUPT6HQ7KZ85 1726 aaKnown RBP17.61■□□□□ 0.41
TOP3A-210ENST00000580713 CEP170BQ9Y4F5 1589 aaPredicted RBP17.61■□□□□ 0.41
TOP3A-210ENST00000580713 PTPRKQ15262 1439 aa17.6■□□□□ 0.41
TOP3A-210ENST00000580713 MYO3AQ8NEV4 1616 aa17.6■□□□□ 0.41
TOP3A-210ENST00000580713 CLTCQ00610 1675 aaKnown RBP17.6■□□□□ 0.41
TOP3A-210ENST00000580713 LRRIQ1Q96JM4 1722 aa17.6■□□□□ 0.41
TOP3A-210ENST00000580713 ZNF142P52746 1687 aaPredicted RBP17.58■□□□□ 0.41
TOP3A-210ENST00000580713 CCDC18Q5T9S5 1454 aa17.57■□□□□ 0.4
TOP3A-210ENST00000580713 SYCP2Q9BX26 1530 aa17.57■□□□□ 0.4
TOP3A-210ENST00000580713 A2MP01023 1474 aa17.56■□□□□ 0.4
TOP3A-210ENST00000580713 CDC42BPAQ5VT25 1732 aa17.55■□□□□ 0.4
TOP3A-210ENST00000580713 ATP7AQ04656 1500 aa17.54■□□□□ 0.4
TOP3A-210ENST00000580713 CASKIN1Q8WXD9 1431 aa17.54■□□□□ 0.4
TOP3A-210ENST00000580713 A2ML1A8K2U0 1454 aa17.53■□□□□ 0.4
TOP3A-210ENST00000580713 CFDP1Q9UEE9 299 aaPredicted RBP17.53■□□□□ 0.4
TOP3A-210ENST00000580713 CPS1P31327 1500 aa17.52■□□□□ 0.39
TOP3A-210ENST00000580713 SHANK2Q9UPX8 1470 aa17.51■□□□□ 0.39
TOP3A-210ENST00000580713 GPATCH8Q9UKJ3 1502 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms