RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 NBR1Q14596 966 aa19.17■□□□□ 0.66
ITGB4-207ENST00000580542 ATP10BO94823 1461 aa19.14■□□□□ 0.65
ITGB4-207ENST00000580542 UACAQ9BZF9 1416 aa19.14■□□□□ 0.65
ITGB4-207ENST00000580542 RTN4Q9NQC3 1192 aaKnown RBP19.14■□□□□ 0.65
ITGB4-207ENST00000580542 UHRF1BP1LA0JNW5 1464 aa19.14■□□□□ 0.65
ITGB4-207ENST00000580542 ABCC2Q92887 1545 aa19.13■□□□□ 0.65
ITGB4-207ENST00000580542 MYOM3Q5VTT5 1437 aa19.13■□□□□ 0.65
ITGB4-207ENST00000580542 FGD6Q6ZV73 1430 aa19.13■□□□□ 0.65
ITGB4-207ENST00000580542 TROQ12816 1431 aaPredicted RBP19.12■□□□□ 0.65
ITGB4-207ENST00000580542 IL27Q8NEV9 243 aa19.1■□□□□ 0.65
ITGB4-207ENST00000580542 MAPKBP1O60336 1514 aa19.09■□□□□ 0.65
ITGB4-207ENST00000580542 TCOF1Q13428 1488 aaKnown RBP19.09■□□□□ 0.65
ITGB4-207ENST00000580542 RAB3GAP2Q9H2M9 1393 aa19.09■□□□□ 0.65
ITGB4-207ENST00000580542 OSCARQ8IYS5 282 aa19.07■□□□□ 0.64
ITGB4-207ENST00000580542 MIA2Q96PC5 1412 aa19.07■□□□□ 0.64
ITGB4-207ENST00000580542 PTPN23Q9H3S7 1636 aa19.06■□□□□ 0.64
ITGB4-207ENST00000580542 KIF14Q15058 1648 aa19.04■□□□□ 0.64
ITGB4-207ENST00000580542 KDM5BQ9UGL1 1544 aa19.03■□□□□ 0.64
ITGB4-207ENST00000580542 ITSN2Q9NZM3 1697 aa19.02■□□□□ 0.64
ITGB4-207ENST00000580542 EIF5BO60841 1220 aaKnown RBP19.02■□□□□ 0.64
ITGB4-207ENST00000580542 ABCC10Q5T3U5 1492 aa19.02■□□□□ 0.63
ITGB4-207ENST00000580542 NOP58Q9Y2X3 529 aaKnown RBP19■□□□□ 0.63
ITGB4-207ENST00000580542 ZCCHC11Q5TAX3 1644 aaKnown RBP19■□□□□ 0.63
ITGB4-207ENST00000580542 RTL5Q5HYW3 569 aaPredicted RBP18.99■□□□□ 0.63
ITGB4-207ENST00000580542 TRIM52Q96A61 297 aa18.99■□□□□ 0.63
ITGB4-207ENST00000580542 SETD5Q9C0A6 1442 aa18.99■□□□□ 0.63
ITGB4-207ENST00000580542 ARID3CA6NKF2 412 aa18.97■□□□□ 0.63
ITGB4-207ENST00000580542 CDC42BPAQ5VT25 1732 aa18.97■□□□□ 0.63
ITGB4-207ENST00000580542 GPATCH8Q9UKJ3 1502 aaKnown RBP18.96■□□□□ 0.63
ITGB4-207ENST00000580542 PKNOX2Q96KN3 472 aa18.94■□□□□ 0.62
ITGB4-207ENST00000580542 PLEKHD1A6NEE1 506 aa18.93■□□□□ 0.62
ITGB4-207ENST00000580542 PTPRKQ15262 1439 aa18.91■□□□□ 0.62
ITGB4-207ENST00000580542 DNMT1P26358 1616 aaKnown RBP18.9■□□□□ 0.62
ITGB4-207ENST00000580542 PAK3O75914 559 aaPredicted RBP18.9■□□□□ 0.62
ITGB4-207ENST00000580542 IRX6P78412 446 aaPredicted RBP18.9■□□□□ 0.62
ITGB4-207ENST00000580542 FAM50AQ14320 339 aaKnown RBP18.9■□□□□ 0.62
ITGB4-207ENST00000580542 PREX2Q70Z35 1606 aa18.9■□□□□ 0.62
ITGB4-207ENST00000580542 AKNAQ7Z591 1439 aa18.89■□□□□ 0.61
ITGB4-207ENST00000580542 SIN3AQ96ST3 1273 aa18.88■□□□□ 0.61
ITGB4-207ENST00000580542 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.87■□□□□ 0.61
ITGB4-207ENST00000580542 CDC42BPBQ9Y5S2 1711 aa18.87■□□□□ 0.61
ITGB4-207ENST00000580542 TTC37Q6PGP7 1564 aa18.86■□□□□ 0.61
ITGB4-207ENST00000580542 HFM1A2PYH4 1435 aa18.86■□□□□ 0.61
ITGB4-207ENST00000580542 CAMSAP2Q08AD1 1489 aa18.86■□□□□ 0.61
ITGB4-207ENST00000580542 CROCC2H7BZ55 1655 aa18.85■□□□□ 0.61
ITGB4-207ENST00000580542 GCC2Q8IWJ2 1684 aa18.85■□□□□ 0.61
ITGB4-207ENST00000580542 DDX10Q13206 875 aaKnown RBP18.83■□□□□ 0.6
ITGB4-207ENST00000580542 MYO5CQ9NQX4 1742 aa18.83■□□□□ 0.6
ITGB4-207ENST00000580542 DAPK1P53355 1430 aa18.82■□□□□ 0.6
ITGB4-207ENST00000580542 ABCC5O15440 1437 aa18.81■□□□□ 0.6
ITGB4-207ENST00000580542 ARAP3Q8WWN8 1544 aa18.8■□□□□ 0.6
ITGB4-207ENST00000580542 ARHGEF5Q12774 1597 aa18.8■□□□□ 0.6
ITGB4-207ENST00000580542 WDR7Q9Y4E6 1490 aa18.8■□□□□ 0.6
ITGB4-207ENST00000580542 ROCK1Q13464 1354 aa18.8■□□□□ 0.6
ITGB4-207ENST00000580542 NAIPQ13075 1403 aa18.8■□□□□ 0.6
ITGB4-207ENST00000580542 SAMD9LQ8IVG5 1584 aa18.78■□□□□ 0.6
ITGB4-207ENST00000580542 ADGBQ8N7X0 1667 aa18.78■□□□□ 0.6
ITGB4-207ENST00000580542 TIMELESSQ9UNS1 1208 aa18.78■□□□□ 0.6
ITGB4-207ENST00000580542 RIMBP3CA6NJZ7 1639 aa18.77■□□□□ 0.6
ITGB4-207ENST00000580542 RIMBP3BA6NNM3 1639 aa18.77■□□□□ 0.6
ITGB4-207ENST00000580542 RIMBP3Q9UFD9 1639 aa18.77■□□□□ 0.6
ITGB4-207ENST00000580542 PPP1R15AO75807 674 aaPredicted RBP18.77■□□□□ 0.6
ITGB4-207ENST00000580542 CFDP1Q9UEE9 299 aaPredicted RBP18.77■□□□□ 0.6
ITGB4-207ENST00000580542 ABCA9Q8IUA7 1624 aa18.77■□□□□ 0.6
ITGB4-207ENST00000580542 ADGRL2O95490 1459 aa18.77■□□□□ 0.59
ITGB4-207ENST00000580542 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.59
ITGB4-207ENST00000580542 ZNF644Q9H582 1327 aaPredicted RBP18.76■□□□□ 0.59
ITGB4-207ENST00000580542 MBD5Q9P267 1494 aa18.74■□□□□ 0.59
ITGB4-207ENST00000580542 PLCH2O75038 1416 aa18.74■□□□□ 0.59
ITGB4-207ENST00000580542 PPP4R2Q9NY27 417 aa18.72■□□□□ 0.59
ITGB4-207ENST00000580542 ASXL2Q76L83 1435 aa18.72■□□□□ 0.59
ITGB4-207ENST00000580542 KIAA1107Q9UPP5 1409 aa18.7■□□□□ 0.58
ITGB4-207ENST00000580542 CCER2I3L3R5 266 aa18.7■□□□□ 0.58
ITGB4-207ENST00000580542 ZBTB47Q9UFB7 747 aaPredicted RBP18.7■□□□□ 0.58
ITGB4-207ENST00000580542 ANP32AP39687 249 aaKnown RBP18.7■□□□□ 0.58
ITGB4-207ENST00000580542 HIRIP3Q9BW71 556 aaPredicted RBP18.7■□□□□ 0.58
ITGB4-207ENST00000580542 MAST1Q9Y2H9 1570 aa18.69■□□□□ 0.58
ITGB4-207ENST00000580542 ARHGAP5Q13017 1502 aa18.69■□□□□ 0.58
ITGB4-207ENST00000580542 ANP32CO43423 234 aa18.69■□□□□ 0.58
ITGB4-207ENST00000580542 PLEKHH2Q8IVE3 1493 aa18.69■□□□□ 0.58
ITGB4-207ENST00000580542 KDM6BO15054 1643 aa18.67■□□□□ 0.58
ITGB4-207ENST00000580542 IPO9Q96P70 1041 aaKnown RBP18.67■□□□□ 0.58
ITGB4-207ENST00000580542 NCOA1Q15788 1441 aa18.66■□□□□ 0.58
ITGB4-207ENST00000580542 ABCC1P33527 1531 aa18.66■□□□□ 0.58
ITGB4-207ENST00000580542 CCDC141Q6ZP82 1450 aa18.65■□□□□ 0.58
ITGB4-207ENST00000580542 SYCP2Q9BX26 1530 aa18.65■□□□□ 0.58
ITGB4-207ENST00000580542 B4GALNT3Q6L9W6 998 aa18.64■□□□□ 0.58
ITGB4-207ENST00000580542 RSPH4AQ5TD94 716 aa18.63■□□□□ 0.57
ITGB4-207ENST00000580542 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
ITGB4-207ENST00000580542 ARHGEF12Q9NZN5 1544 aa18.62■□□□□ 0.57
ITGB4-207ENST00000580542 C9orf84Q5VXU9 1444 aa18.62■□□□□ 0.57
ITGB4-207ENST00000580542 HNRNPUQ00839 825 aaKnown RBP eCLIP18.62■□□□□ 0.57
ITGB4-207ENST00000580542 TONSLQ96HA7 1378 aa18.61■□□□□ 0.57
ITGB4-207ENST00000580542 C11orf95C9JLR9 678 aaPredicted RBP18.61■□□□□ 0.57
ITGB4-207ENST00000580542 WASHC2AQ641Q2 1341 aa18.61■□□□□ 0.57
ITGB4-207ENST00000580542 SLC24A1O60721 1099 aa18.61■□□□□ 0.57
ITGB4-207ENST00000580542 PLXNC1O60486 1568 aa18.6■□□□□ 0.57
ITGB4-207ENST00000580542 ZNF777Q9ULD5 760 aaPredicted RBP18.6■□□□□ 0.57
ITGB4-207ENST00000580542 CHIC2Q9UKJ5 165 aa18.59■□□□□ 0.57
ITGB4-207ENST00000580542 BRPF3Q9ULD4 1205 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms