RNA–Protein interactions for RNA: ENST00000580446.1

CSNK1D-213, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 612 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-213ENST00000580446 HECW1Q76N89 1606 aa24.64■■□□□ 1.54
CSNK1D-213ENST00000580446 FAM9AQ8IZU1 332 aaPredicted RBP24.59■■□□□ 1.53
CSNK1D-213ENST00000580446 IQSEC2Q5JU85 1478 aa24.58■■□□□ 1.52
CSNK1D-213ENST00000580446 RAPGEF6Q8TEU7 1601 aa24.57■■□□□ 1.52
CSNK1D-213ENST00000580446 NUP153P49790 1475 aaKnown RBP24.57■■□□□ 1.52
CSNK1D-213ENST00000580446 MAGI2Q86UL8 1455 aa24.56■■□□□ 1.52
CSNK1D-213ENST00000580446 ZNF335Q9H4Z2 1342 aaPredicted RBP24.56■■□□□ 1.52
CSNK1D-213ENST00000580446 MED1Q15648 1581 aaPredicted RBP24.55■■□□□ 1.52
CSNK1D-213ENST00000580446 ATP10AO60312 1499 aa24.54■■□□□ 1.52
CSNK1D-213ENST00000580446 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.54■■□□□ 1.52
CSNK1D-213ENST00000580446 C9orf84Q5VXU9 1444 aa24.53■■□□□ 1.52
CSNK1D-213ENST00000580446 SCAPERQ9BY12 1400 aa24.53■■□□□ 1.52
CSNK1D-213ENST00000580446 CFAP74Q9C0B2 1584 aa24.52■■□□□ 1.52
CSNK1D-213ENST00000580446 SCAF1Q9H7N4 1312 aaKnown RBP24.51■■□□□ 1.51
CSNK1D-213ENST00000580446 HSPA1LP34931 641 aa24.5■■□□□ 1.51
CSNK1D-213ENST00000580446 RANGAP1P46060 587 aaPredicted RBP24.5■■□□□ 1.51
CSNK1D-213ENST00000580446 NCOA1Q15788 1441 aa24.5■■□□□ 1.51
CSNK1D-213ENST00000580446 PLEKHD1A6NEE1 506 aa24.49■■□□□ 1.51
CSNK1D-213ENST00000580446 NCKAP5LQ9HCH0 1330 aa24.46■■□□□ 1.51
CSNK1D-213ENST00000580446 PIP4K2BP78356 416 aa24.44■■□□□ 1.5
CSNK1D-213ENST00000580446 PRXQ9BXM0 1461 aa24.43■■□□□ 1.5
CSNK1D-213ENST00000580446 PHF23Q9BUL5 403 aaPredicted RBP24.41■■□□□ 1.5
CSNK1D-213ENST00000580446 SAMD9Q5K651 1589 aa24.4■■□□□ 1.5
CSNK1D-213ENST00000580446 C3P01024 1663 aa24.4■■□□□ 1.5
CSNK1D-213ENST00000580446 MYT1LQ9UL68 1186 aa24.39■■□□□ 1.49
CSNK1D-213ENST00000580446 CAMSAP1Q5T5Y3 1602 aa24.38■■□□□ 1.49
CSNK1D-213ENST00000580446 TRAPPC8Q9Y2L5 1435 aa24.36■■□□□ 1.49
CSNK1D-213ENST00000580446 SENP3Q9H4L4 574 aaPredicted RBP24.35■■□□□ 1.49
CSNK1D-213ENST00000580446 AFAP1Q8N556 730 aa24.34■■□□□ 1.49
CSNK1D-213ENST00000580446 PLCH2O75038 1416 aa24.33■■□□□ 1.49
CSNK1D-213ENST00000580446 ESF1Q9H501 851 aaKnown RBP24.32■■□□□ 1.48
CSNK1D-213ENST00000580446 SETD1BQ9UPS6 1966 aaKnown RBP24.31■■□□□ 1.48
CSNK1D-213ENST00000580446 CDK13Q14004 1512 aaKnown RBP24.3■■□□□ 1.48
CSNK1D-213ENST00000580446 DIP2CQ9Y2E4 1556 aa24.28■■□□□ 1.48
CSNK1D-213ENST00000580446 EFCAB2Q5VUJ9 269 aa24.24■■□□□ 1.47
CSNK1D-213ENST00000580446 ABCA6Q8N139 1617 aa24.22■■□□□ 1.47
CSNK1D-213ENST00000580446 ZNF518AQ6AHZ1 1483 aa24.22■■□□□ 1.47
CSNK1D-213ENST00000580446 KDM5CP41229 1560 aa24.18■■□□□ 1.46
CSNK1D-213ENST00000580446 PPP6R1Q9UPN7 881 aa24.17■■□□□ 1.46
CSNK1D-213ENST00000580446 TOM1O60784 492 aa24.16■■□□□ 1.46
CSNK1D-213ENST00000580446 REREQ9P2R6 1566 aa24.13■■□□□ 1.45
CSNK1D-213ENST00000580446 PKD2Q13563 968 aa24.13■■□□□ 1.45
CSNK1D-213ENST00000580446 ARHGAP5Q13017 1502 aa24.13■■□□□ 1.45
CSNK1D-213ENST00000580446 RGS17Q9UGC6 210 aaPredicted RBP24.12■■□□□ 1.45
CSNK1D-213ENST00000580446 ATP1B4Q9UN42 357 aaPredicted RBP24.12■■□□□ 1.45
CSNK1D-213ENST00000580446 TCOF1Q13428 1488 aaKnown RBP24.12■■□□□ 1.45
CSNK1D-213ENST00000580446 AGLP35573 1532 aa24.11■■□□□ 1.45
CSNK1D-213ENST00000580446 NPATQ14207 1427 aa24.1■■□□□ 1.45
CSNK1D-213ENST00000580446 CNTLNQ9NXG0 1405 aa24.1■■□□□ 1.45
CSNK1D-213ENST00000580446 KIF14Q15058 1648 aa24.1■■□□□ 1.45
CSNK1D-213ENST00000580446 MYO5CQ9NQX4 1742 aa24.1■■□□□ 1.45
CSNK1D-213ENST00000580446 ZMYM3Q14202 1370 aa24.1■■□□□ 1.45
CSNK1D-213ENST00000580446 PLA2R1Q13018 1463 aa24.08■■□□□ 1.45
CSNK1D-213ENST00000580446 MYO3AQ8NEV4 1616 aa24.07■■□□□ 1.44
CSNK1D-213ENST00000580446 MLH3Q9UHC1 1453 aa24.06■■□□□ 1.44
CSNK1D-213ENST00000580446 ALKQ9UM73 1620 aa24.05■■□□□ 1.44
CSNK1D-213ENST00000580446 CEP170BQ9Y4F5 1589 aaPredicted RBP24.04■■□□□ 1.44
CSNK1D-213ENST00000580446 ZNF142P52746 1687 aaPredicted RBP23.99■■□□□ 1.43
CSNK1D-213ENST00000580446 SHANK2Q9UPX8 1470 aa23.99■■□□□ 1.43
CSNK1D-213ENST00000580446 CSRNP3Q8WYN3 585 aa23.98■■□□□ 1.43
CSNK1D-213ENST00000580446 PTPRKQ15262 1439 aa23.98■■□□□ 1.43
CSNK1D-213ENST00000580446 CPS1P31327 1500 aa23.98■■□□□ 1.43
CSNK1D-213ENST00000580446 SUPT6HQ7KZ85 1726 aaKnown RBP23.98■■□□□ 1.43
CSNK1D-213ENST00000580446 MROH2AA6NES4 1674 aa23.95■■□□□ 1.43
CSNK1D-213ENST00000580446 POTEAQ6S8J7 498 aa23.95■■□□□ 1.42
CSNK1D-213ENST00000580446 CLTCQ00610 1675 aaKnown RBP23.95■■□□□ 1.42
CSNK1D-213ENST00000580446 KIDINS220Q9ULH0 1771 aa23.93■■□□□ 1.42
CSNK1D-213ENST00000580446 ABCC1P33527 1531 aa23.92■■□□□ 1.42
CSNK1D-213ENST00000580446 NEURL4Q96JN8 1562 aa23.91■■□□□ 1.42
CSNK1D-213ENST00000580446 TROQ12816 1431 aaPredicted RBP23.89■■□□□ 1.41
CSNK1D-213ENST00000580446 GGT6Q6P531 493 aa23.88■■□□□ 1.41
CSNK1D-213ENST00000580446 VWDEQ8N2E2 1590 aa23.87■■□□□ 1.41
CSNK1D-213ENST00000580446 ITSN2Q9NZM3 1697 aa23.87■■□□□ 1.41
CSNK1D-213ENST00000580446 CDC42BPBQ9Y5S2 1711 aa23.87■■□□□ 1.41
CSNK1D-213ENST00000580446 DNMT1P26358 1616 aaKnown RBP23.86■■□□□ 1.41
CSNK1D-213ENST00000580446 CDK11AQ9UQ88 783 aaPredicted RBP23.86■■□□□ 1.41
CSNK1D-213ENST00000580446 A2ML1A8K2U0 1454 aa23.86■■□□□ 1.41
CSNK1D-213ENST00000580446 SETD1AO15047 1707 aaKnown RBP23.84■■□□□ 1.41
CSNK1D-213ENST00000580446 EHMT2Q96KQ7 1210 aa23.83■■□□□ 1.41
CSNK1D-213ENST00000580446 ZNF777Q9ULD5 760 aaPredicted RBP23.82■■□□□ 1.4
CSNK1D-213ENST00000580446 CLIP1P30622 1438 aa23.82■■□□□ 1.4
CSNK1D-213ENST00000580446 SAMD9LQ8IVG5 1584 aa23.81■■□□□ 1.4
CSNK1D-213ENST00000580446 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.79■■□□□ 1.42e-11■■■■■ 32.8
CSNK1D-213ENST00000580446 FBXO31Q5XUX0 539 aaPredicted RBP23.79■■□□□ 1.4
CSNK1D-213ENST00000580446 POLR1AO95602 1720 aaPredicted RBP23.79■■□□□ 1.4
CSNK1D-213ENST00000580446 PREX2Q70Z35 1606 aa23.78■■□□□ 1.4
CSNK1D-213ENST00000580446 SPAG9O60271 1321 aaKnown RBP23.78■■□□□ 1.4
CSNK1D-213ENST00000580446 LRRC7Q96NW7 1537 aa23.75■■□□□ 1.39
CSNK1D-213ENST00000580446 HNRNPMP52272 730 aaKnown RBP eCLIP23.75■■□□□ 1.392e-7■■■■■ 32.8
CSNK1D-213ENST00000580446 NPHP4O75161 1426 aaPredicted RBP23.74■■□□□ 1.39
CSNK1D-213ENST00000580446 ANKLE2Q86XL3 938 aa23.73■■□□□ 1.39
CSNK1D-213ENST00000580446 SYCP2Q9BX26 1530 aa23.73■■□□□ 1.39
CSNK1D-213ENST00000580446 TNRQ92752 1358 aa23.72■■□□□ 1.39
CSNK1D-213ENST00000580446 A2MP01023 1474 aa23.72■■□□□ 1.39
CSNK1D-213ENST00000580446 PLXNC1O60486 1568 aa23.71■■□□□ 1.39
CSNK1D-213ENST00000580446 RNF17Q9BXT8 1623 aaKnown RBP23.7■■□□□ 1.39
CSNK1D-213ENST00000580446 STRCP1A6NGW2 1772 aa23.7■■□□□ 1.38
CSNK1D-213ENST00000580446 FMN1Q68DA7 1419 aa23.69■■□□□ 1.38
CSNK1D-213ENST00000580446 ATP7AQ04656 1500 aa23.69■■□□□ 1.38
CSNK1D-213ENST00000580446 LRRIQ1Q96JM4 1722 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms