RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	MAP3K1	Q13233	1512 aa		20.26	■□□□□ 0.83
PRPF8-216	ENST00000577001	NPM2	Q86SE8	214 aa	Known RBP	20.25	■□□□□ 0.83
PRPF8-216	ENST00000577001	CFAP43	Q8NDM7	1665 aa		20.24	■□□□□ 0.83
PRPF8-216	ENST00000577001	HNRNPM	P52272	730 aa	Known RBP eCLIP	20.24	■□□□□ 0.83	3e-6	■■■□□ 16.7
PRPF8-216	ENST00000577001	DCAF11	Q8TEB1	546 aa		20.22	■□□□□ 0.83
PRPF8-216	ENST00000577001	CCDC7	Q96M83	1385 aa		20.22	■□□□□ 0.83
PRPF8-216	ENST00000577001	SKAP1	Q86WV1	359 aa		20.22	■□□□□ 0.83
PRPF8-216	ENST00000577001	ZNF608	Q9ULD9	1512 aa	Predicted RBP	20.22	■□□□□ 0.83
PRPF8-216	ENST00000577001	PRG4	Q92954	1404 aa	Predicted RBP	20.21	■□□□□ 0.83
PRPF8-216	ENST00000577001	DENND4B	O75064	1496 aa	Predicted RBP	20.2	■□□□□ 0.82
PRPF8-216	ENST00000577001	TMC1	Q8TDI8	760 aa		20.2	■□□□□ 0.82
PRPF8-216	ENST00000577001	CARD11	Q9BXL7	1154 aa		20.2	■□□□□ 0.82
PRPF8-216	ENST00000577001	AKNA	Q7Z591	1439 aa		20.2	■□□□□ 0.82
PRPF8-216	ENST00000577001	GRIN2B	Q13224	1484 aa		20.19	■□□□□ 0.82
PRPF8-216	ENST00000577001	THOC2	Q8NI27	1593 aa	Known RBP	20.18	■□□□□ 0.82
PRPF8-216	ENST00000577001	CTTNBP2	Q8WZ74	1663 aa		20.18	■□□□□ 0.82
PRPF8-216	ENST00000577001	ERCC6	Q03468	1493 aa		20.17	■□□□□ 0.82
PRPF8-216	ENST00000577001	ST20-MTHFS	A0A0A6YYL1	179 aa		20.17	■□□□□ 0.82
PRPF8-216	ENST00000577001	LRRIQ1	Q96JM4	1722 aa		20.16	■□□□□ 0.82
PRPF8-216	ENST00000577001	EFCAB5	A4FU69	1503 aa		20.16	■□□□□ 0.82
PRPF8-216	ENST00000577001	EPRS	P07814	1512 aa	Known RBP	20.15	■□□□□ 0.82
PRPF8-216	ENST00000577001	PPP4R2	Q9NY27	417 aa		20.15	■□□□□ 0.82
PRPF8-216	ENST00000577001	CC2D1B	Q5T0F9	858 aa	Known RBP	20.15	■□□□□ 0.82
PRPF8-216	ENST00000577001	CCDC136	Q96JN2	1154 aa		20.15	■□□□□ 0.82
PRPF8-216	ENST00000577001	PBRM1	Q86U86	1689 aa		20.13	■□□□□ 0.81
PRPF8-216	ENST00000577001	WDR62	O43379	1518 aa		20.13	■□□□□ 0.81
PRPF8-216	ENST00000577001	BCL11A	Q9H165	835 aa		20.13	■□□□□ 0.81
PRPF8-216	ENST00000577001	CNTLN	Q9NXG0	1405 aa		20.12	■□□□□ 0.81
PRPF8-216	ENST00000577001	NUP155	O75694	1391 aa		20.1	■□□□□ 0.81
PRPF8-216	ENST00000577001	PLIN1	O60240	522 aa		20.09	■□□□□ 0.81
PRPF8-216	ENST00000577001	KDM5B	Q9UGL1	1544 aa		20.09	■□□□□ 0.81
PRPF8-216	ENST00000577001	PAK3	O75914	559 aa	Predicted RBP	20.09	■□□□□ 0.81
PRPF8-216	ENST00000577001	ANKRD30B	Q9BXX2	1392 aa		20.09	■□□□□ 0.81
PRPF8-216	ENST00000577001	SUPT6H	Q7KZ85	1726 aa	Known RBP	20.09	■□□□□ 0.81
PRPF8-216	ENST00000577001	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	20.08	■□□□□ 0.81	5e-6	■■■■■ 46.2
PRPF8-216	ENST00000577001	ABCC5	O15440	1437 aa		20.08	■□□□□ 0.8
PRPF8-216	ENST00000577001	NBPF1	Q3BBV0	1214 aa		20.07	■□□□□ 0.8
PRPF8-216	ENST00000577001	PLB1	Q6P1J6	1458 aa		20.06	■□□□□ 0.8
PRPF8-216	ENST00000577001	MYT1L	Q9UL68	1186 aa		20.06	■□□□□ 0.8
PRPF8-216	ENST00000577001	USP47	Q96K76	1375 aa		20.06	■□□□□ 0.8
PRPF8-216	ENST00000577001	IFT140	Q96RY7	1462 aa		20.06	■□□□□ 0.8
PRPF8-216	ENST00000577001	UGGT2	Q9NYU1	1516 aa		20.06	■□□□□ 0.8
PRPF8-216	ENST00000577001	PLEKHD1	A6NEE1	506 aa		20.05	■□□□□ 0.8
PRPF8-216	ENST00000577001	JPH4	Q96JJ6	628 aa		20.05	■□□□□ 0.8
PRPF8-216	ENST00000577001	DAPK1	P53355	1430 aa		20.05	■□□□□ 0.8
PRPF8-216	ENST00000577001	TSPY4	P0CV99	314 aa		20.05	■□□□□ 0.8
PRPF8-216	ENST00000577001	TSPY10	P0CW01	314 aa		20.05	■□□□□ 0.8
PRPF8-216	ENST00000577001	EHBP1L1	Q8N3D4	1523 aa		20.04	■□□□□ 0.8
PRPF8-216	ENST00000577001	CDCA7L	Q96GN5	454 aa		20.03	■□□□□ 0.8
PRPF8-216	ENST00000577001	ADAMTS12	P58397	1594 aa		20.01	■□□□□ 0.79
PRPF8-216	ENST00000577001	ZBED9	Q6R2W3	1325 aa		19.99	■□□□□ 0.79
PRPF8-216	ENST00000577001	EXOC6	Q8TAG9	804 aa		19.99	■□□□□ 0.79
PRPF8-216	ENST00000577001	NCOA1	Q15788	1441 aa		19.98	■□□□□ 0.79
PRPF8-216	ENST00000577001	EIF4G3	O43432	1585 aa	Known RBP	19.97	■□□□□ 0.79
PRPF8-216	ENST00000577001	SAMD9	Q5K651	1589 aa		19.96	■□□□□ 0.79
PRPF8-216	ENST00000577001	IQGAP2	Q13576	1575 aa		19.95	■□□□□ 0.78
PRPF8-216	ENST00000577001	LAS1L	Q9Y4W2	734 aa	Known RBP	19.94	■□□□□ 0.78
PRPF8-216	ENST00000577001	NUDC	Q9Y266	331 aa		19.93	■□□□□ 0.78
PRPF8-216	ENST00000577001	NUP153	P49790	1475 aa	Known RBP	19.92	■□□□□ 0.78
PRPF8-216	ENST00000577001	PNISR	Q8TF01	805 aa	Known RBP	19.91	■□□□□ 0.78
PRPF8-216	ENST00000577001	RPRD2	Q5VT52	1461 aa	Known RBP	19.9	■□□□□ 0.78
PRPF8-216	ENST00000577001	ROCK2	O75116	1388 aa	Known RBP	19.88	■□□□□ 0.77
PRPF8-216	ENST00000577001	HECW1	Q76N89	1606 aa		19.88	■□□□□ 0.77
PRPF8-216	ENST00000577001	ANKRD50	Q9ULJ7	1429 aa		19.86	■□□□□ 0.77
PRPF8-216	ENST00000577001	DHX29	Q7Z478	1369 aa	Known RBP	19.85	■□□□□ 0.77
PRPF8-216	ENST00000577001	SLC4A3	P48751	1232 aa		19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	ARHGEF11	O15085	1522 aa		19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	MIA2	Q96PC5	1412 aa		19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	ANKRD30A	Q9BXX3	1397 aa		19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	TEX14	Q8IWB6	1497 aa		19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	DEK	P35659	375 aa	Known RBP	19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	NOP58	Q9Y2X3	529 aa	Known RBP	19.84	■□□□□ 0.77
PRPF8-216	ENST00000577001	CAMSAP2	Q08AD1	1489 aa		19.83	■□□□□ 0.77
PRPF8-216	ENST00000577001	DISP1	Q96F81	1524 aa		19.83	■□□□□ 0.77
PRPF8-216	ENST00000577001	PANK3	Q9H999	370 aa		19.83	■□□□□ 0.77
PRPF8-216	ENST00000577001	PZP	P20742	1482 aa		19.83	■□□□□ 0.77
PRPF8-216	ENST00000577001	TNNT2	P45379	298 aa	Predicted RBP	19.83	■□□□□ 0.76
PRPF8-216	ENST00000577001	TCOF1	Q13428	1488 aa	Known RBP	19.82	■□□□□ 0.76
PRPF8-216	ENST00000577001	GRIN2A	Q12879	1464 aa		19.82	■□□□□ 0.76
PRPF8-216	ENST00000577001	CCDC146	Q8IYE0	955 aa		19.82	■□□□□ 0.76
PRPF8-216	ENST00000577001	RTN4	Q9NQC3	1192 aa	Known RBP	19.82	■□□□□ 0.76
PRPF8-216	ENST00000577001	FANCI	Q9NVI1	1328 aa		19.81	■□□□□ 0.76
PRPF8-216	ENST00000577001	SPATA31E1	Q6ZUB1	1445 aa		19.8	■□□□□ 0.76
PRPF8-216	ENST00000577001	RCAN3	Q9UKA8	241 aa		19.79	■□□□□ 0.76
PRPF8-216	ENST00000577001	GPATCH8	Q9UKJ3	1502 aa	Known RBP	19.79	■□□□□ 0.76
PRPF8-216	ENST00000577001	ANP32A	P39687	249 aa	Known RBP	19.79	■□□□□ 0.76
PRPF8-216	ENST00000577001	C20orf194	Q5TEA3	1177 aa		19.79	■□□□□ 0.76
PRPF8-216	ENST00000577001	KIAA1107	Q9UPP5	1409 aa		19.79	■□□□□ 0.76
PRPF8-216	ENST00000577001	KIF15	Q9NS87	1388 aa		19.78	■□□□□ 0.76
PRPF8-216	ENST00000577001	KIF14	Q15058	1648 aa		19.78	■□□□□ 0.76
PRPF8-216	ENST00000577001	MAGI1	Q96QZ7	1491 aa	Predicted RBP	19.77	■□□□□ 0.76
PRPF8-216	ENST00000577001	CHGA	P10645	457 aa	Known RBP	19.77	■□□□□ 0.76
PRPF8-216	ENST00000577001	TRO	Q12816	1431 aa	Predicted RBP	19.77	■□□□□ 0.76
PRPF8-216	ENST00000577001	NEUROD2	Q15784	382 aa		19.77	■□□□□ 0.75
PRPF8-216	ENST00000577001	ZBTB47	Q9UFB7	747 aa	Predicted RBP	19.77	■□□□□ 0.75
PRPF8-216	ENST00000577001	KIAA0586	Q9BVV6	1533 aa		19.76	■□□□□ 0.75
PRPF8-216	ENST00000577001	SYNJ2	O15056	1496 aa		19.74	■□□□□ 0.75
PRPF8-216	ENST00000577001	BCORL1	Q5H9F3	1711 aa		19.73	■□□□□ 0.75
PRPF8-216	ENST00000577001	RRP1	P56182	461 aa	Known RBP	19.73	■□□□□ 0.75
PRPF8-216	ENST00000577001	CRBN	Q96SW2	442 aa		19.73	■□□□□ 0.75

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