RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.58■■□□□ 1.37
CIITA-211ENST00000576601 HNRNPUL2Q1KMD3 747 aaKnown RBP23.58■■□□□ 1.37
CIITA-211ENST00000576601 FAM9AQ8IZU1 332 aaPredicted RBP23.58■■□□□ 1.37
CIITA-211ENST00000576601 MLECQ14165 292 aa23.54■■□□□ 1.36
CIITA-211ENST00000576601 MYO5CQ9NQX4 1742 aa23.53■■□□□ 1.36
CIITA-211ENST00000576601 CDK13Q14004 1512 aaKnown RBP23.52■■□□□ 1.36
CIITA-211ENST00000576601 C9orf84Q5VXU9 1444 aa23.51■■□□□ 1.35
CIITA-211ENST00000576601 ATP10AO60312 1499 aa23.5■■□□□ 1.35
CIITA-211ENST00000576601 C3P01024 1663 aa23.5■■□□□ 1.35
CIITA-211ENST00000576601 PLEKHD1A6NEE1 506 aa23.49■■□□□ 1.35
CIITA-211ENST00000576601 SCAPERQ9BY12 1400 aa23.49■■□□□ 1.35
CIITA-211ENST00000576601 LTBP4Q8N2S1 1624 aa23.48■■□□□ 1.35
CIITA-211ENST00000576601 PLCH2O75038 1416 aa23.46■■□□□ 1.35
CIITA-211ENST00000576601 KDM5CP41229 1560 aa23.46■■□□□ 1.35
CIITA-211ENST00000576601 CEBPAP49715 358 aaPredicted RBP23.45■■□□□ 1.34
CIITA-211ENST00000576601 DIP2CQ9Y2E4 1556 aa23.44■■□□□ 1.34
CIITA-211ENST00000576601 UHRF1BP1Q6BDS2 1440 aa23.43■■□□□ 1.34
CIITA-211ENST00000576601 KIF14Q15058 1648 aa23.42■■□□□ 1.34
CIITA-211ENST00000576601 REREQ9P2R6 1566 aa23.42■■□□□ 1.34
CIITA-211ENST00000576601 ABCA6Q8N139 1617 aa23.41■■□□□ 1.34
CIITA-211ENST00000576601 PTPRTO14522 1441 aa23.41■■□□□ 1.34
CIITA-211ENST00000576601 IQSEC2Q5JU85 1478 aa23.37■■□□□ 1.33
CIITA-211ENST00000576601 ZNF518AQ6AHZ1 1483 aa23.37■■□□□ 1.33
CIITA-211ENST00000576601 CSRNP3Q8WYN3 585 aa23.37■■□□□ 1.33
CIITA-211ENST00000576601 DMRT2Q9Y5R5 561 aa23.37■■□□□ 1.33
CIITA-211ENST00000576601 RANGAP1P46060 587 aaPredicted RBP23.35■■□□□ 1.33
CIITA-211ENST00000576601 LRRIQ1Q96JM4 1722 aa23.34■■□□□ 1.33
CIITA-211ENST00000576601 CDC42BPBQ9Y5S2 1711 aa23.33■■□□□ 1.33
CIITA-211ENST00000576601 NCOA1Q15788 1441 aa23.3■■□□□ 1.32
CIITA-211ENST00000576601 AGLP35573 1532 aa23.28■■□□□ 1.32
CIITA-211ENST00000576601 ITSN2Q9NZM3 1697 aa23.27■■□□□ 1.32
CIITA-211ENST00000576601 ARHGAP5Q13017 1502 aa23.27■■□□□ 1.32
CIITA-211ENST00000576601 KIDINS220Q9ULH0 1771 aa23.26■■□□□ 1.31
CIITA-211ENST00000576601 MROH2AA6NES4 1674 aa23.25■■□□□ 1.31
CIITA-211ENST00000576601 EFCAB2Q5VUJ9 269 aa23.25■■□□□ 1.31
CIITA-211ENST00000576601 MLH3Q9UHC1 1453 aa23.24■■□□□ 1.31
CIITA-211ENST00000576601 PREX2Q70Z35 1606 aa23.23■■□□□ 1.31
CIITA-211ENST00000576601 AFAP1Q8N556 730 aa23.23■■□□□ 1.31
CIITA-211ENST00000576601 EEA1Q15075 1411 aa23.23■■□□□ 1.31
CIITA-211ENST00000576601 ABCC1P33527 1531 aa23.23■■□□□ 1.31
CIITA-211ENST00000576601 CAMSAP1Q5T5Y3 1602 aa23.22■■□□□ 1.31
CIITA-211ENST00000576601 TRAPPC8Q9Y2L5 1435 aa23.22■■□□□ 1.31
CIITA-211ENST00000576601 ZNF142P52746 1687 aaPredicted RBP23.21■■□□□ 1.31
CIITA-211ENST00000576601 SUPT6HQ7KZ85 1726 aaKnown RBP23.19■■□□□ 1.3
CIITA-211ENST00000576601 TROQ12816 1431 aaPredicted RBP23.18■■□□□ 1.3
CIITA-211ENST00000576601 MYO3AQ8NEV4 1616 aa23.16■■□□□ 1.3
CIITA-211ENST00000576601 CDC42BPAQ5VT25 1732 aa23.16■■□□□ 1.3
CIITA-211ENST00000576601 FMN1Q68DA7 1419 aa23.14■■□□□ 1.29
CIITA-211ENST00000576601 ARHGAP35Q9NRY4 1499 aa23.13■■□□□ 1.29
CIITA-211ENST00000576601 CNTLNQ9NXG0 1405 aa23.13■■□□□ 1.29
CIITA-211ENST00000576601 NPATQ14207 1427 aa23.12■■□□□ 1.29
CIITA-211ENST00000576601 CLTCQ00610 1675 aaKnown RBP23.1■■□□□ 1.29
CIITA-211ENST00000576601 ZNF335Q9H4Z2 1342 aaPredicted RBP23.09■■□□□ 1.29
CIITA-211ENST00000576601 MED1Q15648 1581 aaPredicted RBP23.09■■□□□ 1.29
CIITA-211ENST00000576601 CLIP1P30622 1438 aa23.08■■□□□ 1.28
CIITA-211ENST00000576601 SAMD9LQ8IVG5 1584 aa23.07■■□□□ 1.28
CIITA-211ENST00000576601 CEP170BQ9Y4F5 1589 aaPredicted RBP23.07■■□□□ 1.28
CIITA-211ENST00000576601 PLA2R1Q13018 1463 aa23.07■■□□□ 1.28
CIITA-211ENST00000576601 TCOF1Q13428 1488 aaKnown RBP23.07■■□□□ 1.28
CIITA-211ENST00000576601 PLXNC1O60486 1568 aa23.05■■□□□ 1.28
CIITA-211ENST00000576601 MYT1LQ9UL68 1186 aa23.03■■□□□ 1.28
CIITA-211ENST00000576601 CDK11AQ9UQ88 783 aaPredicted RBP23.03■■□□□ 1.28
CIITA-211ENST00000576601 NCKAP5LQ9HCH0 1330 aa23.03■■□□□ 1.28
CIITA-211ENST00000576601 UBAP1LF5GYI3 381 aa23.02■■□□□ 1.28
CIITA-211ENST00000576601 ATP1B4Q9UN42 357 aaPredicted RBP23.02■■□□□ 1.28
CIITA-211ENST00000576601 ESF1Q9H501 851 aaKnown RBP23.01■■□□□ 1.27
CIITA-211ENST00000576601 POLR1AO95602 1720 aaPredicted RBP23.01■■□□□ 1.27
CIITA-211ENST00000576601 INO80Q9ULG1 1556 aaPredicted RBP23■■□□□ 1.27
CIITA-211ENST00000576601 ZMYM3Q14202 1370 aa23■■□□□ 1.27
CIITA-211ENST00000576601 SYCP2Q9BX26 1530 aa22.98■■□□□ 1.27
CIITA-211ENST00000576601 PTPRKQ15262 1439 aa22.97■■□□□ 1.27
CIITA-211ENST00000576601 ATP7AQ04656 1500 aa22.95■■□□□ 1.26
CIITA-211ENST00000576601 NEURL4Q96JN8 1562 aa22.95■■□□□ 1.26
CIITA-211ENST00000576601 DNMT1P26358 1616 aaKnown RBP22.94■■□□□ 1.26
CIITA-211ENST00000576601 ALKQ9UM73 1620 aa22.92■■□□□ 1.26
CIITA-211ENST00000576601 CCDC18Q5T9S5 1454 aa22.92■■□□□ 1.26
CIITA-211ENST00000576601 PKD2Q13563 968 aa22.9■■□□□ 1.26
CIITA-211ENST00000576601 ADGBQ8N7X0 1667 aa22.88■■□□□ 1.25
CIITA-211ENST00000576601 HSPA1LP34931 641 aa22.88■■□□□ 1.25
CIITA-211ENST00000576601 EHMT2Q96KQ7 1210 aa22.87■■□□□ 1.25
CIITA-211ENST00000576601 CPS1P31327 1500 aa22.87■■□□□ 1.25
CIITA-211ENST00000576601 A2ML1A8K2U0 1454 aa22.86■■□□□ 1.25
CIITA-211ENST00000576601 CASKIN1Q8WXD9 1431 aa22.86■■□□□ 1.25
CIITA-211ENST00000576601 A2MP01023 1474 aa22.85■■□□□ 1.25
CIITA-211ENST00000576601 PPP6R1Q9UPN7 881 aa22.85■■□□□ 1.25
CIITA-211ENST00000576601 GPATCH8Q9UKJ3 1502 aaKnown RBP22.84■■□□□ 1.25
CIITA-211ENST00000576601 VWDEQ8N2E2 1590 aa22.83■■□□□ 1.25
CIITA-211ENST00000576601 CHIC1Q5VXU3 224 aa22.82■■□□□ 1.24
CIITA-211ENST00000576601 SPAG9O60271 1321 aaKnown RBP22.82■■□□□ 1.24
CIITA-211ENST00000576601 UBTFP17480 764 aaKnown RBP22.81■■□□□ 1.24
CIITA-211ENST00000576601 SHANK2Q9UPX8 1470 aa22.8■■□□□ 1.24
CIITA-211ENST00000576601 STRCP1A6NGW2 1772 aa22.8■■□□□ 1.24
CIITA-211ENST00000576601 KIAA1107Q9UPP5 1409 aa22.78■■□□□ 1.24
CIITA-211ENST00000576601 FYCO1Q9BQS8 1478 aa22.78■■□□□ 1.24
CIITA-211ENST00000576601 PIP4K2BP78356 416 aa22.77■■□□□ 1.24
CIITA-211ENST00000576601 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
CIITA-211ENST00000576601 HNRNPMP52272 730 aaKnown RBP eCLIP22.75■■□□□ 1.23
CIITA-211ENST00000576601 ZNF777Q9ULD5 760 aaPredicted RBP22.74■■□□□ 1.23
CIITA-211ENST00000576601 PLEKHH2Q8IVE3 1493 aa22.73■■□□□ 1.23
CIITA-211ENST00000576601 DEPDC5O75140 1603 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms