RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 CHD1O14646 1710 aa17.06■□□□□ 0.32
CIITA-209ENST00000573309 ATP10BO94823 1461 aa17.04■□□□□ 0.32
CIITA-209ENST00000573309 ARHGEF11O15085 1522 aa17.04■□□□□ 0.32
CIITA-209ENST00000573309 SLC4A1APQ9BWU0 796 aaKnown RBP17.04■□□□□ 0.32
CIITA-209ENST00000573309 RAPGEF6Q8TEU7 1601 aa17.04■□□□□ 0.32
CIITA-209ENST00000573309 SUPT6HQ7KZ85 1726 aaKnown RBP17.04■□□□□ 0.32
CIITA-209ENST00000573309 TROQ12816 1431 aaPredicted RBP17.01■□□□□ 0.31
CIITA-209ENST00000573309 NAIPQ13075 1403 aa17.01■□□□□ 0.31
CIITA-209ENST00000573309 PTPN23Q9H3S7 1636 aa17.01■□□□□ 0.31
CIITA-209ENST00000573309 OSCARQ8IYS5 282 aa17■□□□□ 0.31
CIITA-209ENST00000573309 TSPY4P0CV99 314 aa17■□□□□ 0.31
CIITA-209ENST00000573309 TSPY10P0CW01 314 aa17■□□□□ 0.31
CIITA-209ENST00000573309 MPHOSPH9Q99550 1183 aa17■□□□□ 0.31
CIITA-209ENST00000573309 MSH5O43196 834 aa16.99■□□□□ 0.31
CIITA-209ENST00000573309 DDX10Q13206 875 aaKnown RBP16.99■□□□□ 0.31
CIITA-209ENST00000573309 KIF14Q15058 1648 aa16.99■□□□□ 0.31
CIITA-209ENST00000573309 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
CIITA-209ENST00000573309 TONSLQ96HA7 1378 aa16.97■□□□□ 0.31
CIITA-209ENST00000573309 MAPKBP1O60336 1514 aa16.97■□□□□ 0.31
CIITA-209ENST00000573309 UACAQ9BZF9 1416 aa16.95■□□□□ 0.3
CIITA-209ENST00000573309 POLR3GLQ9BT43 218 aa16.95■□□□□ 0.3
CIITA-209ENST00000573309 ABCC5O15440 1437 aa16.94■□□□□ 0.3
CIITA-209ENST00000573309 GPATCH8Q9UKJ3 1502 aaKnown RBP16.94■□□□□ 0.3
CIITA-209ENST00000573309 SENP3Q9H4L4 574 aaPredicted RBP16.93■□□□□ 0.3
CIITA-209ENST00000573309 KDM6BO15054 1643 aa16.92■□□□□ 0.3
CIITA-209ENST00000573309 HFM1A2PYH4 1435 aa16.92■□□□□ 0.3
CIITA-209ENST00000573309 KDM2AQ9Y2K7 1162 aa16.92■□□□□ 0.3
CIITA-209ENST00000573309 DAPK1P53355 1430 aa16.92■□□□□ 0.3
CIITA-209ENST00000573309 AFAP1Q8N556 730 aa16.91■□□□□ 0.3
CIITA-209ENST00000573309 PKD2Q13563 968 aa16.9■□□□□ 0.3
CIITA-209ENST00000573309 NEFLP07196 543 aa16.89■□□□□ 0.3
CIITA-209ENST00000573309 NPM1P06748 294 aaKnown RBP eCLIP16.88■□□□□ 0.29
CIITA-209ENST00000573309 CAMSAP2Q08AD1 1489 aa16.88■□□□□ 0.29
CIITA-209ENST00000573309 PPP1R15AO75807 674 aaPredicted RBP16.88■□□□□ 0.29
CIITA-209ENST00000573309 RGL3Q3MIN7 710 aa16.88■□□□□ 0.29
CIITA-209ENST00000573309 L3MBTL2Q969R5 705 aa16.87■□□□□ 0.29
CIITA-209ENST00000573309 MIA2Q96PC5 1412 aa16.85■□□□□ 0.29
CIITA-209ENST00000573309 NUP155O75694 1391 aa16.84■□□□□ 0.29
CIITA-209ENST00000573309 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.84■□□□□ 0.29
CIITA-209ENST00000573309 ABCA8O94911 1581 aa16.84■□□□□ 0.29
CIITA-209ENST00000573309 ARHGAP5Q13017 1502 aa16.79■□□□□ 0.28
CIITA-209ENST00000573309 ANKRD30AQ9BXX3 1397 aa16.79■□□□□ 0.28
CIITA-209ENST00000573309 TCOF1Q13428 1488 aaKnown RBP16.78■□□□□ 0.28
CIITA-209ENST00000573309 EFCAB2Q5VUJ9 269 aa16.78■□□□□ 0.28
CIITA-209ENST00000573309 KIF15Q9NS87 1388 aa16.78■□□□□ 0.28
CIITA-209ENST00000573309 NCOA1Q15788 1441 aa16.78■□□□□ 0.28
CIITA-209ENST00000573309 C9orf84Q5VXU9 1444 aa16.77■□□□□ 0.27
CIITA-209ENST00000573309 ANKRD50Q9ULJ7 1429 aa16.76■□□□□ 0.27
CIITA-209ENST00000573309 NBPF8Q3BBV2 869 aa16.75■□□□□ 0.27
CIITA-209ENST00000573309 FANCIQ9NVI1 1328 aa16.75■□□□□ 0.27
CIITA-209ENST00000573309 CCER2I3L3R5 266 aa16.75■□□□□ 0.27
CIITA-209ENST00000573309 SENP3-EIF4A1A0A087X0R7 540 aa16.74■□□□□ 0.27
CIITA-209ENST00000573309 AKNAQ7Z591 1439 aa16.74■□□□□ 0.27
CIITA-209ENST00000573309 IRX6P78412 446 aaPredicted RBP16.74■□□□□ 0.27
CIITA-209ENST00000573309 ABCC10Q5T3U5 1492 aa16.73■□□□□ 0.27
CIITA-209ENST00000573309 DENND4BO75064 1496 aaPredicted RBP16.72■□□□□ 0.27
CIITA-209ENST00000573309 ANP32CO43423 234 aa16.72■□□□□ 0.27
CIITA-209ENST00000573309 HSPA5P11021 654 aaKnown RBP16.71■□□□□ 0.27
CIITA-209ENST00000573309 DCAF11Q8TEB1 546 aa16.71■□□□□ 0.27
CIITA-209ENST00000573309 ABCC2Q92887 1545 aa16.71■□□□□ 0.27
CIITA-209ENST00000573309 RAPGEF3O95398 923 aa16.71■□□□□ 0.26
CIITA-209ENST00000573309 TTC37Q6PGP7 1564 aa16.7■□□□□ 0.26
CIITA-209ENST00000573309 SYCP2Q9BX26 1530 aa16.7■□□□□ 0.26
CIITA-209ENST00000573309 SPAG9O60271 1321 aaKnown RBP16.69■□□□□ 0.26
CIITA-209ENST00000573309 ERICH6Q7L0X2 663 aa16.69■□□□□ 0.26
CIITA-209ENST00000573309 KIF3BO15066 747 aa16.68■□□□□ 0.26
CIITA-209ENST00000573309 CLASP1Q7Z460 1538 aa16.68■□□□□ 0.26
CIITA-209ENST00000573309 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.68■□□□□ 0.26
CIITA-209ENST00000573309 TRAPPC8Q9Y2L5 1435 aa16.67■□□□□ 0.26
CIITA-209ENST00000573309 GGT6Q6P531 493 aa16.67■□□□□ 0.26
CIITA-209ENST00000573309 DNMT1P26358 1616 aaKnown RBP16.66■□□□□ 0.26
CIITA-209ENST00000573309 CHGAP10645 457 aaKnown RBP16.65■□□□□ 0.26
CIITA-209ENST00000573309 CDC42BPAQ5VT25 1732 aa16.65■□□□□ 0.26
CIITA-209ENST00000573309 ASXL2Q76L83 1435 aa16.64■□□□□ 0.25
CIITA-209ENST00000573309 ROCK1Q13464 1354 aa16.64■□□□□ 0.25
CIITA-209ENST00000573309 SCAPERQ9BY12 1400 aa16.64■□□□□ 0.25
CIITA-209ENST00000573309 ANKRD30BQ9BXX2 1392 aa16.64■□□□□ 0.25
CIITA-209ENST00000573309 C11orf95C9JLR9 678 aaPredicted RBP16.64■□□□□ 0.25
CIITA-209ENST00000573309 PLPPR3Q6T4P5 718 aa16.64■□□□□ 0.25
CIITA-209ENST00000573309 ARHGEF12Q9NZN5 1544 aa16.64■□□□□ 0.25
CIITA-209ENST00000573309 PLEKHH2Q8IVE3 1493 aa16.63■□□□□ 0.25
CIITA-209ENST00000573309 MBD5Q9P267 1494 aa16.63■□□□□ 0.25
CIITA-209ENST00000573309 SHROOM2Q13796 1616 aa16.63■□□□□ 0.25
CIITA-209ENST00000573309 SAMD9LQ8IVG5 1584 aa16.61■□□□□ 0.25
CIITA-209ENST00000573309 EIF4G2P78344 907 aaKnown RBP eCLIP16.61■□□□□ 0.25
CIITA-209ENST00000573309 ZCCHC11Q5TAX3 1644 aaKnown RBP16.61■□□□□ 0.25
CIITA-209ENST00000573309 TIMELESSQ9UNS1 1208 aa16.6■□□□□ 0.25
CIITA-209ENST00000573309 PRKCSHP14314 528 aaPredicted RBP16.6■□□□□ 0.25
CIITA-209ENST00000573309 DEKP35659 375 aaKnown RBP16.6■□□□□ 0.25
CIITA-209ENST00000573309 HNRNPUQ00839 825 aaKnown RBP eCLIP16.6■□□□□ 0.25
CIITA-209ENST00000573309 FAM69CQ0P6D2 419 aa16.6■□□□□ 0.25
CIITA-209ENST00000573309 NUTM2DQ5VT03 806 aaPredicted RBP16.6■□□□□ 0.25
CIITA-209ENST00000573309 PZPP20742 1482 aa16.6■□□□□ 0.25
CIITA-209ENST00000573309 CCDC141Q6ZP82 1450 aa16.6■□□□□ 0.25
CIITA-209ENST00000573309 MLECQ14165 292 aa16.58■□□□□ 0.25
CIITA-209ENST00000573309 ITSN2Q9NZM3 1697 aa16.58■□□□□ 0.24
CIITA-209ENST00000573309 PLCH2O75038 1416 aa16.58■□□□□ 0.24
CIITA-209ENST00000573309 ADCY10Q96PN6 1610 aa16.58■□□□□ 0.24
CIITA-209ENST00000573309 CDC42BPBQ9Y5S2 1711 aa16.56■□□□□ 0.24
CIITA-209ENST00000573309 KDM5BQ9UGL1 1544 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms