RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ERCC6Q03468 1493 aa32.02■■■□□ 2.72
VPS53-211ENST00000571805 HSPA5P11021 654 aaKnown RBP32.01■■■□□ 2.71
VPS53-211ENST00000571805 FOXD1Q16676 465 aa31.99■■■□□ 2.71
VPS53-211ENST00000571805 SYNJ2O15056 1496 aa31.99■■■□□ 2.71
VPS53-211ENST00000571805 TROQ12816 1431 aaPredicted RBP31.99■■■□□ 2.71
VPS53-211ENST00000571805 ANKRD30BQ9BXX2 1392 aa31.98■■■□□ 2.71
VPS53-211ENST00000571805 L3MBTL2Q969R5 705 aa31.98■■■□□ 2.71
VPS53-211ENST00000571805 PRG4Q92954 1404 aaPredicted RBP31.98■■■□□ 2.71
VPS53-211ENST00000571805 WASHC2AQ641Q2 1341 aa31.96■■■□□ 2.71
VPS53-211ENST00000571805 CHMP7Q8WUX9 453 aaPredicted RBP31.95■■■□□ 2.71
VPS53-211ENST00000571805 RPRD2Q5VT52 1461 aaKnown RBP31.95■■■□□ 2.7
VPS53-211ENST00000571805 PLB1Q6P1J6 1458 aa31.94■■■□□ 2.7
VPS53-211ENST00000571805 EIF4G2P78344 907 aaKnown RBP eCLIP31.92■■■□□ 2.72e-8■■■■■ 33.8
VPS53-211ENST00000571805 ADCY10Q96PN6 1610 aa31.91■■■□□ 2.7
VPS53-211ENST00000571805 CAMSAP2Q08AD1 1489 aa31.9■■■□□ 2.7
VPS53-211ENST00000571805 ITSN2Q9NZM3 1697 aa31.9■■■□□ 2.7
VPS53-211ENST00000571805 GPATCH8Q9UKJ3 1502 aaKnown RBP31.89■■■□□ 2.69
VPS53-211ENST00000571805 NUP160Q12769 1436 aa31.87■■■□□ 2.69
VPS53-211ENST00000571805 TEX14Q8IWB6 1497 aa31.87■■■□□ 2.69
VPS53-211ENST00000571805 KIF14Q15058 1648 aa31.86■■■□□ 2.69
VPS53-211ENST00000571805 CFDP1Q9UEE9 299 aaPredicted RBP31.86■■■□□ 2.69
VPS53-211ENST00000571805 SLC4A1APQ9BWU0 796 aaKnown RBP31.84■■■□□ 2.69
VPS53-211ENST00000571805 ADGBQ8N7X0 1667 aa31.84■■■□□ 2.69
VPS53-211ENST00000571805 CARMIL2Q6F5E8 1435 aa31.84■■■□□ 2.69
VPS53-211ENST00000571805 NCOA1Q15788 1441 aa31.83■■■□□ 2.69
VPS53-211ENST00000571805 FKBP8Q14318 412 aa31.83■■■□□ 2.69
VPS53-211ENST00000571805 JPH4Q96JJ6 628 aa31.82■■■□□ 2.69
VPS53-211ENST00000571805 PZPP20742 1482 aa31.82■■■□□ 2.68
VPS53-211ENST00000571805 NBPF8Q3BBV2 869 aa31.81■■■□□ 2.68
VPS53-211ENST00000571805 FBLN2P98095 1184 aa31.8■■■□□ 2.68
VPS53-211ENST00000571805 CROCC2H7BZ55 1655 aa31.79■■■□□ 2.68
VPS53-211ENST00000571805 ADGRL2O95490 1459 aa31.79■■■□□ 2.68
VPS53-211ENST00000571805 CNTLNQ9NXG0 1405 aa31.77■■■□□ 2.68
VPS53-211ENST00000571805 C11orf95C9JLR9 678 aaPredicted RBP31.76■■■□□ 2.68
VPS53-211ENST00000571805 TSHZ2Q9NRE2 1034 aa31.75■■■□□ 2.67
VPS53-211ENST00000571805 CCDC7Q96M83 1385 aa31.74■■■□□ 2.67
VPS53-211ENST00000571805 ABCA8O94911 1581 aa31.73■■■□□ 2.67
VPS53-211ENST00000571805 BCANQ96GW7 911 aa31.72■■■□□ 2.67
VPS53-211ENST00000571805 SPATA31E1Q6ZUB1 1445 aa31.72■■■□□ 2.67
VPS53-211ENST00000571805 ZNF777Q9ULD5 760 aaPredicted RBP31.71■■■□□ 2.67
VPS53-211ENST00000571805 CDC42BPAQ5VT25 1732 aa31.68■■■□□ 2.66
VPS53-211ENST00000571805 NEFLP07196 543 aa31.67■■■□□ 2.66
VPS53-211ENST00000571805 ABCC10Q5T3U5 1492 aa31.66■■■□□ 2.66
VPS53-211ENST00000571805 ANKRD30AQ9BXX3 1397 aa31.66■■■□□ 2.66
VPS53-211ENST00000571805 KIAA1107Q9UPP5 1409 aa31.66■■■□□ 2.66
VPS53-211ENST00000571805 ATP10BO94823 1461 aa31.65■■■□□ 2.66
VPS53-211ENST00000571805 POLR1AO95602 1720 aaPredicted RBP31.65■■■□□ 2.66
VPS53-211ENST00000571805 PLEKHD1A6NEE1 506 aa31.64■■■□□ 2.65
VPS53-211ENST00000571805 MBD5Q9P267 1494 aa31.63■■■□□ 2.65
VPS53-211ENST00000571805 HNRNPUQ00839 825 aaKnown RBP eCLIP31.62■■■□□ 2.65
VPS53-211ENST00000571805 ANKRD50Q9ULJ7 1429 aa31.59■■■□□ 2.65
VPS53-211ENST00000571805 PRKRIP1Q9H875 184 aaPredicted RBP31.59■■■□□ 2.65
VPS53-211ENST00000571805 SHANK2Q9UPX8 1470 aa31.58■■■□□ 2.65
VPS53-211ENST00000571805 KIF7Q2M1P5 1343 aa31.57■■■□□ 2.64
VPS53-211ENST00000571805 PKD2Q13563 968 aa31.57■■■□□ 2.64
VPS53-211ENST00000571805 CCDC184Q52MB2 194 aa31.57■■■□□ 2.64
VPS53-211ENST00000571805 C9orf84Q5VXU9 1444 aa31.52■■■□□ 2.64
VPS53-211ENST00000571805 MYT1Q01538 1121 aa31.52■■■□□ 2.64
VPS53-211ENST00000571805 KDM5DQ9BY66 1539 aa31.46■■■□□ 2.63
VPS53-211ENST00000571805 NUP155O75694 1391 aa31.45■■■□□ 2.62
VPS53-211ENST00000571805 ARHGEF5Q12774 1597 aa31.44■■■□□ 2.62
VPS53-211ENST00000571805 BCORL1Q5H9F3 1711 aa31.42■■■□□ 2.62
VPS53-211ENST00000571805 PTPRGP23470 1445 aa31.42■■■□□ 2.62
VPS53-211ENST00000571805 TSPY4P0CV99 314 aa31.42■■■□□ 2.62
VPS53-211ENST00000571805 TSPY10P0CW01 314 aa31.42■■■□□ 2.62
VPS53-211ENST00000571805 UHRF1BP1Q6BDS2 1440 aa31.41■■■□□ 2.62
VPS53-211ENST00000571805 USP47Q96K76 1375 aa31.41■■■□□ 2.62
VPS53-211ENST00000571805 KDM5CP41229 1560 aa31.4■■■□□ 2.62
VPS53-211ENST00000571805 MRS2Q9HD23 443 aa31.39■■■□□ 2.62
VPS53-211ENST00000571805 HNRNPMP52272 730 aaKnown RBP eCLIP31.38■■■□□ 2.613e-6■■■□□ 17.4
VPS53-211ENST00000571805 KIF15Q9NS87 1388 aa31.36■■■□□ 2.61
VPS53-211ENST00000571805 CDC42BPBQ9Y5S2 1711 aa31.35■■■□□ 2.61
VPS53-211ENST00000571805 ZNF326Q5BKZ1 582 aaKnown RBP31.35■■■□□ 2.61
VPS53-211ENST00000571805 FAM9BQ8IZU0 186 aa31.35■■■□□ 2.61
VPS53-211ENST00000571805 ARHGEF12Q9NZN5 1544 aa31.35■■■□□ 2.61
VPS53-211ENST00000571805 DHX29Q7Z478 1369 aaKnown RBP31.35■■■□□ 2.61
VPS53-211ENST00000571805 SAMD9LQ8IVG5 1584 aa31.34■■■□□ 2.61
VPS53-211ENST00000571805 RALGAPBQ86X10 1494 aa31.33■■■□□ 2.61
VPS53-211ENST00000571805 PREX2Q70Z35 1606 aa31.33■■■□□ 2.61
VPS53-211ENST00000571805 ARID4BQ4LE39 1312 aaPredicted RBP31.32■■■□□ 2.6
VPS53-211ENST00000571805 CCDC141Q6ZP82 1450 aa31.3■■■□□ 2.6
VPS53-211ENST00000571805 ZBED9Q6R2W3 1325 aa31.29■■■□□ 2.6
VPS53-211ENST00000571805 CHD1O14646 1710 aa31.27■■■□□ 2.6
VPS53-211ENST00000571805 RSPH4AQ5TD94 716 aa31.24■■■□□ 2.59
VPS53-211ENST00000571805 IRX6P78412 446 aaPredicted RBP31.22■■■□□ 2.59
VPS53-211ENST00000571805 SHROOM2Q13796 1616 aa31.22■■■□□ 2.59
VPS53-211ENST00000571805 FAM135AQ9P2D6 1515 aa31.2■■■□□ 2.59
VPS53-211ENST00000571805 ERICH6BQ5W0A0 696 aa31.2■■■□□ 2.59
VPS53-211ENST00000571805 CARD11Q9BXL7 1154 aa31.2■■■□□ 2.59
VPS53-211ENST00000571805 RBM19Q9Y4C8 960 aaKnown RBP31.17■■■□□ 2.58
VPS53-211ENST00000571805 TTC37Q6PGP7 1564 aa31.17■■■□□ 2.58
VPS53-211ENST00000571805 ROCK2O75116 1388 aaKnown RBP31.17■■■□□ 2.58
VPS53-211ENST00000571805 MAST1Q9Y2H9 1570 aa31.16■■■□□ 2.58
VPS53-211ENST00000571805 POLR3GLQ9BT43 218 aa31.16■■■□□ 2.58
VPS53-211ENST00000571805 SYCP2Q9BX26 1530 aa31.15■■■□□ 2.58
VPS53-211ENST00000571805 KDM2AQ9Y2K7 1162 aa31.15■■■□□ 2.58
VPS53-211ENST00000571805 DCAF11Q8TEB1 546 aa31.15■■■□□ 2.58
VPS53-211ENST00000571805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.14■■■□□ 2.58
VPS53-211ENST00000571805 ARHGAP5Q13017 1502 aa31.11■■■□□ 2.57
VPS53-211ENST00000571805 UNC13BO14795 1591 aa31.11■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms