RNA–Protein interactions for RNA: ENST00000569429.5

HERPUD1-217, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 562 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-217ENST00000569429 ZNF335Q9H4Z2 1342 aaPredicted RBP12.01□□□□□ -0.49
HERPUD1-217ENST00000569429 GOLGA3Q08378 1498 aa12.01□□□□□ -0.49
HERPUD1-217ENST00000569429 CFAP74Q9C0B2 1584 aa12□□□□□ -0.49
HERPUD1-217ENST00000569429 SRCAPQ6ZRS2 3230 aa11.99□□□□□ -0.49
HERPUD1-217ENST00000569429 C3P01024 1663 aa11.99□□□□□ -0.49
HERPUD1-217ENST00000569429 HECW1Q76N89 1606 aa11.98□□□□□ -0.49
HERPUD1-217ENST00000569429 CTTNBP2Q8WZ74 1663 aa11.97□□□□□ -0.49
HERPUD1-217ENST00000569429 ATP10AO60312 1499 aa11.96□□□□□ -0.49
HERPUD1-217ENST00000569429 RAPGEF2Q9Y4G8 1499 aa11.96□□□□□ -0.49
HERPUD1-217ENST00000569429 TOM1O60784 492 aa11.96□□□□□ -0.49
HERPUD1-217ENST00000569429 C9orf84Q5VXU9 1444 aa11.95□□□□□ -0.5
HERPUD1-217ENST00000569429 SCAF1Q9H7N4 1312 aaKnown RBP11.95□□□□□ -0.5
HERPUD1-217ENST00000569429 CAMSAP1Q5T5Y3 1602 aa11.95□□□□□ -0.5
HERPUD1-217ENST00000569429 TRAPPC8Q9Y2L5 1435 aa11.94□□□□□ -0.5
HERPUD1-217ENST00000569429 PIP4K2BP78356 416 aa11.94□□□□□ -0.5
HERPUD1-217ENST00000569429 RGS17Q9UGC6 210 aaPredicted RBP11.94□□□□□ -0.5
HERPUD1-217ENST00000569429 ARID3CA6NKF2 412 aa11.93□□□□□ -0.5
HERPUD1-217ENST00000569429 FAM9AQ8IZU1 332 aaPredicted RBP11.9□□□□□ -0.5
HERPUD1-217ENST00000569429 PKD2Q13563 968 aa11.89□□□□□ -0.51
HERPUD1-217ENST00000569429 NCKAP5LQ9HCH0 1330 aa11.88□□□□□ -0.51
HERPUD1-217ENST00000569429 SUPT6HQ7KZ85 1726 aaKnown RBP11.87□□□□□ -0.51
HERPUD1-217ENST00000569429 PLA2R1Q13018 1463 aa11.87□□□□□ -0.51
HERPUD1-217ENST00000569429 CPS1P31327 1500 aa11.86□□□□□ -0.51
HERPUD1-217ENST00000569429 TCOF1Q13428 1488 aaKnown RBP11.85□□□□□ -0.51
HERPUD1-217ENST00000569429 RAPGEF6Q8TEU7 1601 aa11.85□□□□□ -0.51
HERPUD1-217ENST00000569429 ALKQ9UM73 1620 aa11.85□□□□□ -0.51
HERPUD1-217ENST00000569429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.85□□□□□ -0.51
HERPUD1-217ENST00000569429 SCAPERQ9BY12 1400 aa11.85□□□□□ -0.51
HERPUD1-217ENST00000569429 PTPRKQ15262 1439 aa11.84□□□□□ -0.51
HERPUD1-217ENST00000569429 REREQ9P2R6 1566 aa11.84□□□□□ -0.51
HERPUD1-217ENST00000569429 AGLP35573 1532 aa11.83□□□□□ -0.52
HERPUD1-217ENST00000569429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.83□□□□□ -0.52
HERPUD1-217ENST00000569429 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
HERPUD1-217ENST00000569429 ZNF142P52746 1687 aaPredicted RBP11.83□□□□□ -0.52
HERPUD1-217ENST00000569429 NPATQ14207 1427 aa11.83□□□□□ -0.52
HERPUD1-217ENST00000569429 POTEAQ6S8J7 498 aa11.82□□□□□ -0.52
HERPUD1-217ENST00000569429 PPP6R1Q9UPN7 881 aa11.82□□□□□ -0.52
HERPUD1-217ENST00000569429 SETD1AO15047 1707 aaKnown RBP11.82□□□□□ -0.52
HERPUD1-217ENST00000569429 CNTLNQ9NXG0 1405 aa11.81□□□□□ -0.52
HERPUD1-217ENST00000569429 ESF1Q9H501 851 aaKnown RBP11.81□□□□□ -0.52
HERPUD1-217ENST00000569429 PLEKHD1A6NEE1 506 aa11.8□□□□□ -0.52
HERPUD1-217ENST00000569429 MROH2AA6NES4 1674 aa11.8□□□□□ -0.52
HERPUD1-217ENST00000569429 NUP153P49790 1475 aaKnown RBP11.78□□□□□ -0.52
HERPUD1-217ENST00000569429 SHANK2Q9UPX8 1470 aa11.78□□□□□ -0.52
HERPUD1-217ENST00000569429 DIP2CQ9Y2E4 1556 aa11.78□□□□□ -0.52
HERPUD1-217ENST00000569429 KDM5CP41229 1560 aa11.77□□□□□ -0.53
HERPUD1-217ENST00000569429 PLCH2O75038 1416 aa11.77□□□□□ -0.53
HERPUD1-217ENST00000569429 MYO3AQ8NEV4 1616 aa11.76□□□□□ -0.53
HERPUD1-217ENST00000569429 ZNF518AQ6AHZ1 1483 aa11.76□□□□□ -0.53
HERPUD1-217ENST00000569429 CEP170BQ9Y4F5 1589 aaPredicted RBP11.75□□□□□ -0.53
HERPUD1-217ENST00000569429 UPF1Q92900 1129 aaKnown RBP eCLIP11.75□□□□□ -0.53
HERPUD1-217ENST00000569429 POLR1AO95602 1720 aaPredicted RBP11.74□□□□□ -0.53
HERPUD1-217ENST00000569429 SUPT5HO00267 1087 aaKnown RBP11.74□□□□□ -0.53
HERPUD1-217ENST00000569429 P3H3Q8IVL6 736 aa11.74□□□□□ -0.53
HERPUD1-217ENST00000569429 ABCA6Q8N139 1617 aa11.73□□□□□ -0.53
HERPUD1-217ENST00000569429 ZMYM3Q14202 1370 aa11.72□□□□□ -0.53
HERPUD1-217ENST00000569429 MYO5CQ9NQX4 1742 aa11.72□□□□□ -0.53
HERPUD1-217ENST00000569429 SAMD9Q5K651 1589 aa11.71□□□□□ -0.53
HERPUD1-217ENST00000569429 VWDEQ8N2E2 1590 aa11.71□□□□□ -0.54
HERPUD1-217ENST00000569429 MLH3Q9UHC1 1453 aa11.7□□□□□ -0.54
HERPUD1-217ENST00000569429 EFCAB2Q5VUJ9 269 aa11.7□□□□□ -0.54
HERPUD1-217ENST00000569429 AFAP1Q8N556 730 aa11.7□□□□□ -0.54
HERPUD1-217ENST00000569429 SENP3Q9H4L4 574 aaPredicted RBP11.7□□□□□ -0.54
HERPUD1-217ENST00000569429 NEURL4Q96JN8 1562 aa11.7□□□□□ -0.54
HERPUD1-217ENST00000569429 RNF17Q9BXT8 1623 aaKnown RBP11.69□□□□□ -0.54
HERPUD1-217ENST00000569429 DNMT1P26358 1616 aaKnown RBP11.68□□□□□ -0.54
HERPUD1-217ENST00000569429 MYT1LQ9UL68 1186 aa11.67□□□□□ -0.54
HERPUD1-217ENST00000569429 STRCP1A6NGW2 1772 aa11.66□□□□□ -0.54
HERPUD1-217ENST00000569429 A2ML1A8K2U0 1454 aa11.65□□□□□ -0.54
HERPUD1-217ENST00000569429 CLTCQ00610 1675 aaKnown RBP11.65□□□□□ -0.55
HERPUD1-217ENST00000569429 KIDINS220Q9ULH0 1771 aa11.64□□□□□ -0.55
HERPUD1-217ENST00000569429 PRXQ9BXM0 1461 aa11.63□□□□□ -0.55
HERPUD1-217ENST00000569429 LRRC7Q96NW7 1537 aa11.63□□□□□ -0.55
HERPUD1-217ENST00000569429 SYNMO15061 1565 aa11.62□□□□□ -0.55
HERPUD1-217ENST00000569429 MED14O60244 1454 aa11.6□□□□□ -0.55
HERPUD1-217ENST00000569429 DEPDC5O75140 1603 aa11.6□□□□□ -0.55
HERPUD1-217ENST00000569429 FAM135BQ49AJ0 1406 aa11.59□□□□□ -0.55
HERPUD1-217ENST00000569429 XIRP1Q702N8 1843 aaKnown RBP11.58□□□□□ -0.56
HERPUD1-217ENST00000569429 ANKLE2Q86XL3 938 aa11.58□□□□□ -0.56
HERPUD1-217ENST00000569429 ARHGAP5Q13017 1502 aa11.58□□□□□ -0.56
HERPUD1-217ENST00000569429 IQGAP1P46940 1657 aa11.57□□□□□ -0.56
HERPUD1-217ENST00000569429 CDC42BPBQ9Y5S2 1711 aa11.57□□□□□ -0.56
HERPUD1-217ENST00000569429 ITSN2Q9NZM3 1697 aa11.56□□□□□ -0.56
HERPUD1-217ENST00000569429 NPHP4O75161 1426 aaPredicted RBP11.56□□□□□ -0.56
HERPUD1-217ENST00000569429 CDK13Q14004 1512 aaKnown RBP11.55□□□□□ -0.56
HERPUD1-217ENST00000569429 KIF14Q15058 1648 aa11.53□□□□□ -0.56
HERPUD1-217ENST00000569429 TRIM52Q96A61 297 aa11.53□□□□□ -0.56
HERPUD1-217ENST00000569429 ABCC1P33527 1531 aa11.53□□□□□ -0.56
HERPUD1-217ENST00000569429 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.53□□□□□ -0.56
HERPUD1-217ENST00000569429 CDK12Q9NYV4 1490 aaPredicted RBP11.51□□□□□ -0.57
HERPUD1-217ENST00000569429 ZNF772Q68DY9 489 aaPredicted RBP11.51□□□□□ -0.57
HERPUD1-217ENST00000569429 ROBO1Q9Y6N7 1651 aa11.51□□□□□ -0.57
HERPUD1-217ENST00000569429 PLXNC1O60486 1568 aa11.5□□□□□ -0.57
HERPUD1-217ENST00000569429 THEMISQ8N1K5 641 aaPredicted RBP11.5□□□□□ -0.57
HERPUD1-217ENST00000569429 ZC3H13Q5T200 1668 aaKnown RBP11.49□□□□□ -0.57
HERPUD1-217ENST00000569429 TNRQ92752 1358 aa11.48□□□□□ -0.57
HERPUD1-217ENST00000569429 JCADQ9P266 1359 aa11.48□□□□□ -0.57
HERPUD1-217ENST00000569429 SAMD9LQ8IVG5 1584 aa11.48□□□□□ -0.57
HERPUD1-217ENST00000569429 PREX2Q70Z35 1606 aa11.47□□□□□ -0.57
HERPUD1-217ENST00000569429 RXRBP28702 533 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms