RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 SLC4A1APQ9BWU0 796 aaKnown RBP12.3□□□□□ -0.44
LINC00558-201ENST00000569422 L3MBTL2Q969R5 705 aa12.29□□□□□ -0.44
LINC00558-201ENST00000569422 JPH4Q96JJ6 628 aa12.29□□□□□ -0.44
LINC00558-201ENST00000569422 HSPA5P11021 654 aaKnown RBP12.29□□□□□ -0.44
LINC00558-201ENST00000569422 ZNF326Q5BKZ1 582 aaKnown RBP12.28□□□□□ -0.44
LINC00558-201ENST00000569422 KIAA0586Q9BVV6 1533 aa12.28□□□□□ -0.44
LINC00558-201ENST00000569422 PRG4Q92954 1404 aaPredicted RBP12.28□□□□□ -0.44
LINC00558-201ENST00000569422 GRIN2AQ12879 1464 aa12.27□□□□□ -0.45
LINC00558-201ENST00000569422 DISP1Q96F81 1524 aa12.26□□□□□ -0.45
LINC00558-201ENST00000569422 WDR62O43379 1518 aa12.26□□□□□ -0.45
LINC00558-201ENST00000569422 PLB1Q6P1J6 1458 aa12.26□□□□□ -0.45
LINC00558-201ENST00000569422 POLR3GLQ9BT43 218 aa12.26□□□□□ -0.45
LINC00558-201ENST00000569422 TULP1O00294 542 aaPredicted RBP12.26□□□□□ -0.45
LINC00558-201ENST00000569422 KDM6BO15054 1643 aa12.25□□□□□ -0.45
LINC00558-201ENST00000569422 NUP153P49790 1475 aaKnown RBP12.25□□□□□ -0.45
LINC00558-201ENST00000569422 ARHGEF11O15085 1522 aa12.25□□□□□ -0.45
LINC00558-201ENST00000569422 EIF4G2P78344 907 aaKnown RBP eCLIP12.24□□□□□ -0.45
LINC00558-201ENST00000569422 FKBP8Q14318 412 aa12.24□□□□□ -0.45
LINC00558-201ENST00000569422 MIA2Q96PC5 1412 aa12.24□□□□□ -0.45
LINC00558-201ENST00000569422 TCOF1Q13428 1488 aaKnown RBP12.23□□□□□ -0.45
LINC00558-201ENST00000569422 EIF4G3O43432 1585 aaKnown RBP12.23□□□□□ -0.45
LINC00558-201ENST00000569422 PLEKHD1A6NEE1 506 aa12.22□□□□□ -0.45
LINC00558-201ENST00000569422 ABCC5O15440 1437 aa12.22□□□□□ -0.45
LINC00558-201ENST00000569422 DAPK1P53355 1430 aa12.22□□□□□ -0.45
LINC00558-201ENST00000569422 KIAA0556O60303 1618 aa12.22□□□□□ -0.45
LINC00558-201ENST00000569422 WASHC2AQ641Q2 1341 aa12.21□□□□□ -0.45
LINC00558-201ENST00000569422 DENND4BO75064 1496 aaPredicted RBP12.21□□□□□ -0.45
LINC00558-201ENST00000569422 NBPF8Q3BBV2 869 aa12.21□□□□□ -0.46
LINC00558-201ENST00000569422 C11orf95C9JLR9 678 aaPredicted RBP12.2□□□□□ -0.46
LINC00558-201ENST00000569422 CCER2I3L3R5 266 aa12.19□□□□□ -0.46
LINC00558-201ENST00000569422 HNRNPUQ00839 825 aaKnown RBP eCLIP12.19□□□□□ -0.46
LINC00558-201ENST00000569422 HOMEZQ8IX15 550 aa12.19□□□□□ -0.46
LINC00558-201ENST00000569422 CARMIL2Q6F5E8 1435 aa12.18□□□□□ -0.46
LINC00558-201ENST00000569422 PKD2Q13563 968 aa12.18□□□□□ -0.46
LINC00558-201ENST00000569422 SYNJ2O15056 1496 aa12.17□□□□□ -0.46
LINC00558-201ENST00000569422 HNRNPMP52272 730 aaKnown RBP eCLIP12.17□□□□□ -0.46
LINC00558-201ENST00000569422 TROQ12816 1431 aaPredicted RBP12.17□□□□□ -0.46
LINC00558-201ENST00000569422 RAPGEF6Q8TEU7 1601 aa12.17□□□□□ -0.46
LINC00558-201ENST00000569422 NEFLP07196 543 aa12.16□□□□□ -0.46
LINC00558-201ENST00000569422 CEP170Q5SW79 1584 aa12.16□□□□□ -0.46
LINC00558-201ENST00000569422 FAM9BQ8IZU0 186 aa12.15□□□□□ -0.46
LINC00558-201ENST00000569422 KDM2AQ9Y2K7 1162 aa12.15□□□□□ -0.46
LINC00558-201ENST00000569422 ANKRD30BQ9BXX2 1392 aa12.15□□□□□ -0.46
LINC00558-201ENST00000569422 MAGI1Q96QZ7 1491 aaPredicted RBP12.15□□□□□ -0.46
LINC00558-201ENST00000569422 CCDC184Q52MB2 194 aa12.15□□□□□ -0.46
LINC00558-201ENST00000569422 KDM5BQ9UGL1 1544 aa12.14□□□□□ -0.47
LINC00558-201ENST00000569422 TSPY4P0CV99 314 aa12.14□□□□□ -0.47
LINC00558-201ENST00000569422 TSPY10P0CW01 314 aa12.14□□□□□ -0.47
LINC00558-201ENST00000569422 IRX6P78412 446 aaPredicted RBP12.14□□□□□ -0.47
LINC00558-201ENST00000569422 SENP3-EIF4A1A0A087X0R7 540 aa12.14□□□□□ -0.47
LINC00558-201ENST00000569422 CAMSAP2Q08AD1 1489 aa12.13□□□□□ -0.47
LINC00558-201ENST00000569422 PODXL2Q9NZ53 605 aa12.13□□□□□ -0.47
LINC00558-201ENST00000569422 GPATCH8Q9UKJ3 1502 aaKnown RBP12.13□□□□□ -0.47
LINC00558-201ENST00000569422 ROCK1Q13464 1354 aa12.13□□□□□ -0.47
LINC00558-201ENST00000569422 AKNAQ7Z591 1439 aa12.13□□□□□ -0.47
LINC00558-201ENST00000569422 KCNA4P22459 653 aa12.12□□□□□ -0.47
LINC00558-201ENST00000569422 NCOA1Q15788 1441 aa12.11□□□□□ -0.47
LINC00558-201ENST00000569422 NUP155O75694 1391 aa12.11□□□□□ -0.47
LINC00558-201ENST00000569422 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.11□□□□□ -0.47
LINC00558-201ENST00000569422 GCC2Q8IWJ2 1684 aa12.1□□□□□ -0.47
LINC00558-201ENST00000569422 KIF14Q15058 1648 aa12.1□□□□□ -0.47
LINC00558-201ENST00000569422 ANKRD30AQ9BXX3 1397 aa12.1□□□□□ -0.47
LINC00558-201ENST00000569422 MRS2Q9HD23 443 aa12.09□□□□□ -0.47
LINC00558-201ENST00000569422 PTPRGP23470 1445 aa12.09□□□□□ -0.47
LINC00558-201ENST00000569422 DNMT1P26358 1616 aaKnown RBP12.08□□□□□ -0.48
LINC00558-201ENST00000569422 ATP10BO94823 1461 aa12.08□□□□□ -0.48
LINC00558-201ENST00000569422 RPRD2Q5VT52 1461 aaKnown RBP12.08□□□□□ -0.48
LINC00558-201ENST00000569422 NUP160Q12769 1436 aa12.08□□□□□ -0.48
LINC00558-201ENST00000569422 CCDC7Q96M83 1385 aa12.08□□□□□ -0.48
LINC00558-201ENST00000569422 KIF7Q2M1P5 1343 aa12.08□□□□□ -0.48
LINC00558-201ENST00000569422 ANKRD50Q9ULJ7 1429 aa12.07□□□□□ -0.48
LINC00558-201ENST00000569422 RGL3Q3MIN7 710 aa12.07□□□□□ -0.48
LINC00558-201ENST00000569422 PRKRIP1Q9H875 184 aaPredicted RBP12.06□□□□□ -0.48
LINC00558-201ENST00000569422 TSHZ2Q9NRE2 1034 aa12.06□□□□□ -0.48
LINC00558-201ENST00000569422 DCAF11Q8TEB1 546 aa12.06□□□□□ -0.48
LINC00558-201ENST00000569422 PZPP20742 1482 aa12.05□□□□□ -0.48
LINC00558-201ENST00000569422 TAOK2Q9UL54 1235 aa12.05□□□□□ -0.48
LINC00558-201ENST00000569422 CARD11Q9BXL7 1154 aa12.04□□□□□ -0.48
LINC00558-201ENST00000569422 C9orf84Q5VXU9 1444 aa12.04□□□□□ -0.48
LINC00558-201ENST00000569422 CNTLNQ9NXG0 1405 aa12.04□□□□□ -0.48
LINC00558-201ENST00000569422 KIAA1107Q9UPP5 1409 aa12.03□□□□□ -0.48
LINC00558-201ENST00000569422 TEX14Q8IWB6 1497 aa12.03□□□□□ -0.48
LINC00558-201ENST00000569422 KIF15Q9NS87 1388 aa12.02□□□□□ -0.48
LINC00558-201ENST00000569422 USP47Q96K76 1375 aa12.01□□□□□ -0.49
LINC00558-201ENST00000569422 UBE2Q2Q8WVN8 375 aa12.01□□□□□ -0.49
LINC00558-201ENST00000569422 PHF23Q9BUL5 403 aaPredicted RBP12.01□□□□□ -0.49
LINC00558-201ENST00000569422 ST20-MTHFSA0A0A6YYL1 179 aa11.99□□□□□ -0.49
LINC00558-201ENST00000569422 ABCC10Q5T3U5 1492 aa11.97□□□□□ -0.49
LINC00558-201ENST00000569422 MYT1LQ9UL68 1186 aa11.97□□□□□ -0.49
LINC00558-201ENST00000569422 ABCA8O94911 1581 aa11.97□□□□□ -0.49
LINC00558-201ENST00000569422 ITSN2Q9NZM3 1697 aa11.96□□□□□ -0.49
LINC00558-201ENST00000569422 SPATA31E1Q6ZUB1 1445 aa11.96□□□□□ -0.49
LINC00558-201ENST00000569422 ADGRL2O95490 1459 aa11.95□□□□□ -0.5
LINC00558-201ENST00000569422 SALL2Q9Y467 1007 aaPredicted RBP11.94□□□□□ -0.5
LINC00558-201ENST00000569422 NBPF1Q3BBV0 1214 aa11.93□□□□□ -0.5
LINC00558-201ENST00000569422 ROCK2O75116 1388 aaKnown RBP11.92□□□□□ -0.5
LINC00558-201ENST00000569422 TMC1Q8TDI8 760 aa11.92□□□□□ -0.5
LINC00558-201ENST00000569422 ARHGAP5Q13017 1502 aa11.92□□□□□ -0.5
LINC00558-201ENST00000569422 MBD5Q9P267 1494 aa11.92□□□□□ -0.5
LINC00558-201ENST00000569422 CDC42BPAQ5VT25 1732 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms