RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 C9orf84Q5VXU9 1444 aa28.63■■■□□ 2.17
CDH3-205ENST00000566808 MLECQ14165 292 aa28.63■■■□□ 2.17
CDH3-205ENST00000566808 SOCS7O14512 581 aa28.62■■■□□ 2.17
CDH3-205ENST00000566808 SPATA31D1Q6ZQQ2 1576 aa28.62■■■□□ 2.17
CDH3-205ENST00000566808 ATP10AO60312 1499 aa28.6■■■□□ 2.17
CDH3-205ENST00000566808 ILDR2Q71H61 639 aa28.6■■■□□ 2.17
CDH3-205ENST00000566808 SCAPERQ9BY12 1400 aa28.6■■■□□ 2.17
CDH3-205ENST00000566808 MYO5CQ9NQX4 1742 aa28.59■■■□□ 2.17
CDH3-205ENST00000566808 CSRNP3Q8WYN3 585 aa28.58■■■□□ 2.17
CDH3-205ENST00000566808 PLCH2O75038 1416 aa28.57■■■□□ 2.16
CDH3-205ENST00000566808 CDK13Q14004 1512 aaKnown RBP28.56■■■□□ 2.16
CDH3-205ENST00000566808 SETD1BQ9UPS6 1966 aaKnown RBP28.56■■■□□ 2.16
CDH3-205ENST00000566808 DMRT2Q9Y5R5 561 aa28.55■■■□□ 2.16
CDH3-205ENST00000566808 UHRF1BP1Q6BDS2 1440 aa28.54■■■□□ 2.16
CDH3-205ENST00000566808 RANGAP1P46060 587 aaPredicted RBP28.5■■■□□ 2.15
CDH3-205ENST00000566808 KDM5CP41229 1560 aa28.49■■■□□ 2.15
CDH3-205ENST00000566808 ZNF518AQ6AHZ1 1483 aa28.48■■■□□ 2.15
CDH3-205ENST00000566808 EEA1Q15075 1411 aa28.48■■■□□ 2.15
CDH3-205ENST00000566808 REREQ9P2R6 1566 aa28.46■■■□□ 2.15
CDH3-205ENST00000566808 PTPRTO14522 1441 aa28.45■■■□□ 2.15
CDH3-205ENST00000566808 CEBPAP49715 358 aaPredicted RBP28.44■■■□□ 2.14
CDH3-205ENST00000566808 C3P01024 1663 aa28.44■■■□□ 2.14
CDH3-205ENST00000566808 DIP2CQ9Y2E4 1556 aa28.43■■■□□ 2.14
CDH3-205ENST00000566808 IQSEC2Q5JU85 1478 aa28.42■■■□□ 2.14
CDH3-205ENST00000566808 KIF14Q15058 1648 aa28.42■■■□□ 2.14
CDH3-205ENST00000566808 EFCAB2Q5VUJ9 269 aa28.4■■■□□ 2.14
CDH3-205ENST00000566808 LTBP4Q8N2S1 1624 aa28.39■■■□□ 2.13
CDH3-205ENST00000566808 ABCA6Q8N139 1617 aa28.37■■■□□ 2.13
CDH3-205ENST00000566808 ARHGAP5Q13017 1502 aa28.37■■■□□ 2.13
CDH3-205ENST00000566808 AGLP35573 1532 aa28.32■■■□□ 2.12
CDH3-205ENST00000566808 FMN1Q68DA7 1419 aa28.3■■■□□ 2.12
CDH3-205ENST00000566808 NCOA1Q15788 1441 aa28.29■■■□□ 2.12
CDH3-205ENST00000566808 MLH3Q9UHC1 1453 aa28.28■■■□□ 2.12
CDH3-205ENST00000566808 TROQ12816 1431 aaPredicted RBP28.26■■■□□ 2.12
CDH3-205ENST00000566808 TRAPPC8Q9Y2L5 1435 aa28.26■■■□□ 2.12
CDH3-205ENST00000566808 CDC42BPBQ9Y5S2 1711 aa28.26■■■□□ 2.12
CDH3-205ENST00000566808 CDK11AQ9UQ88 783 aaPredicted RBP28.26■■■□□ 2.11
CDH3-205ENST00000566808 AFAP1Q8N556 730 aa28.25■■■□□ 2.11
CDH3-205ENST00000566808 CLIP1P30622 1438 aa28.25■■■□□ 2.11
CDH3-205ENST00000566808 ABCC1P33527 1531 aa28.23■■■□□ 2.11
CDH3-205ENST00000566808 ITSN2Q9NZM3 1697 aa28.23■■■□□ 2.11
CDH3-205ENST00000566808 PREX2Q70Z35 1606 aa28.23■■■□□ 2.11
CDH3-205ENST00000566808 CNTLNQ9NXG0 1405 aa28.23■■■□□ 2.11
CDH3-205ENST00000566808 MROH2AA6NES4 1674 aa28.23■■■□□ 2.11
CDH3-205ENST00000566808 MYT1LQ9UL68 1186 aa28.22■■■□□ 2.11
CDH3-205ENST00000566808 ESF1Q9H501 851 aaKnown RBP28.2■■■□□ 2.1
CDH3-205ENST00000566808 LRRIQ1Q96JM4 1722 aa28.2■■■□□ 2.1
CDH3-205ENST00000566808 CAMSAP1Q5T5Y3 1602 aa28.18■■■□□ 2.1
CDH3-205ENST00000566808 KIDINS220Q9ULH0 1771 aa28.18■■■□□ 2.1
CDH3-205ENST00000566808 ATP1B4Q9UN42 357 aaPredicted RBP28.16■■■□□ 2.1
CDH3-205ENST00000566808 NPATQ14207 1427 aa28.16■■■□□ 2.1
CDH3-205ENST00000566808 ARHGAP35Q9NRY4 1499 aa28.15■■■□□ 2.1
CDH3-205ENST00000566808 ZNF142P52746 1687 aaPredicted RBP28.13■■■□□ 2.09
CDH3-205ENST00000566808 MYO3AQ8NEV4 1616 aa28.09■■■□□ 2.09
CDH3-205ENST00000566808 SUPT6HQ7KZ85 1726 aaKnown RBP28.09■■■□□ 2.09
CDH3-205ENST00000566808 CDC42BPAQ5VT25 1732 aa28.07■■■□□ 2.08
CDH3-205ENST00000566808 PLA2R1Q13018 1463 aa28.05■■■□□ 2.08
CDH3-205ENST00000566808 SAMD9LQ8IVG5 1584 aa28.03■■■□□ 2.08
CDH3-205ENST00000566808 CEP170BQ9Y4F5 1589 aaPredicted RBP28.02■■■□□ 2.08
CDH3-205ENST00000566808 CLTCQ00610 1675 aaKnown RBP28.01■■■□□ 2.07
CDH3-205ENST00000566808 ZNF335Q9H4Z2 1342 aaPredicted RBP28.01■■■□□ 2.07
CDH3-205ENST00000566808 UBAP1LF5GYI3 381 aa28.01■■■□□ 2.07
CDH3-205ENST00000566808 CCDC18Q5T9S5 1454 aa28.01■■■□□ 2.07
CDH3-205ENST00000566808 TCOF1Q13428 1488 aaKnown RBP27.99■■■□□ 2.07
CDH3-205ENST00000566808 ZMYM3Q14202 1370 aa27.98■■■□□ 2.07
CDH3-205ENST00000566808 PLXNC1O60486 1568 aa27.97■■■□□ 2.07
CDH3-205ENST00000566808 UBTFP17480 764 aaKnown RBP27.96■■■□□ 2.07
CDH3-205ENST00000566808 NCKAP5LQ9HCH0 1330 aa27.95■■■□□ 2.07
CDH3-205ENST00000566808 PKD2Q13563 968 aa27.95■■■□□ 2.06
CDH3-205ENST00000566808 SYCP2Q9BX26 1530 aa27.95■■■□□ 2.06
CDH3-205ENST00000566808 MED1Q15648 1581 aaPredicted RBP27.93■■■□□ 2.06
CDH3-205ENST00000566808 INO80Q9ULG1 1556 aaPredicted RBP27.93■■■□□ 2.06
CDH3-205ENST00000566808 ATP7AQ04656 1500 aa27.92■■■□□ 2.06
CDH3-205ENST00000566808 PTPRKQ15262 1439 aa27.9■■■□□ 2.06
CDH3-205ENST00000566808 CASKIN1Q8WXD9 1431 aa27.9■■■□□ 2.06
CDH3-205ENST00000566808 POLR1AO95602 1720 aaPredicted RBP27.87■■■□□ 2.05
CDH3-205ENST00000566808 SPAG9O60271 1321 aaKnown RBP27.86■■■□□ 2.05
CDH3-205ENST00000566808 A2MP01023 1474 aa27.84■■■□□ 2.05
CDH3-205ENST00000566808 EHMT2Q96KQ7 1210 aa27.83■■■□□ 2.05
CDH3-205ENST00000566808 PPP6R1Q9UPN7 881 aa27.83■■■□□ 2.05
CDH3-205ENST00000566808 ADGBQ8N7X0 1667 aa27.83■■■□□ 2.05
CDH3-205ENST00000566808 CPS1P31327 1500 aa27.82■■■□□ 2.04
CDH3-205ENST00000566808 DNMT1P26358 1616 aaKnown RBP27.81■■■□□ 2.04
CDH3-205ENST00000566808 A2ML1A8K2U0 1454 aa27.81■■■□□ 2.04
CDH3-205ENST00000566808 PLEKHH2Q8IVE3 1493 aa27.81■■■□□ 2.04
CDH3-205ENST00000566808 FYCO1Q9BQS8 1478 aa27.81■■■□□ 2.04
CDH3-205ENST00000566808 GPATCH8Q9UKJ3 1502 aaKnown RBP27.79■■■□□ 2.04
CDH3-205ENST00000566808 KIAA1107Q9UPP5 1409 aa27.79■■■□□ 2.04
CDH3-205ENST00000566808 ZNF777Q9ULD5 760 aaPredicted RBP27.77■■■□□ 2.04
CDH3-205ENST00000566808 NEURL4Q96JN8 1562 aa27.77■■■□□ 2.04
CDH3-205ENST00000566808 HSPA1LP34931 641 aa27.75■■■□□ 2.03
CDH3-205ENST00000566808 SCAF1Q9H7N4 1312 aaKnown RBP27.74■■■□□ 2.03
CDH3-205ENST00000566808 HNRNPMP52272 730 aaKnown RBP eCLIP27.71■■■□□ 2.03
CDH3-205ENST00000566808 SHANK2Q9UPX8 1470 aa27.7■■■□□ 2.03
CDH3-205ENST00000566808 TOM1O60784 492 aa27.7■■■□□ 2.02
CDH3-205ENST00000566808 GGT6Q6P531 493 aa27.7■■■□□ 2.02
CDH3-205ENST00000566808 PIP4K2BP78356 416 aa27.68■■■□□ 2.02
CDH3-205ENST00000566808 FAM135AQ9P2D6 1515 aa27.67■■■□□ 2.02
CDH3-205ENST00000566808 VWDEQ8N2E2 1590 aa27.65■■■□□ 2.02
CDH3-205ENST00000566808 CFDP1Q9UEE9 299 aaPredicted RBP27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms