RNA–Protein interactions for RNA: ENST00000561662.1

COMMD4-204, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 482 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-204ENST00000561662 CEBPAP49715 358 aaPredicted RBP30.71■■■□□ 2.51
COMMD4-204ENST00000561662 MAGI2Q86UL8 1455 aa30.7■■■□□ 2.5
COMMD4-204ENST00000561662 ILDR2Q71H61 639 aa30.64■■■□□ 2.5
COMMD4-204ENST00000561662 ATP1B4Q9UN42 357 aaPredicted RBP30.63■■■□□ 2.49
COMMD4-204ENST00000561662 DISP3Q9P2K9 1392 aa30.63■■■□□ 2.49
COMMD4-204ENST00000561662 PLCH2O75038 1416 aa30.63■■■□□ 2.49
COMMD4-204ENST00000561662 ATP10AO60312 1499 aa30.62■■■□□ 2.49
COMMD4-204ENST00000561662 ARHGEF12Q9NZN5 1544 aa30.62■■■□□ 2.49
COMMD4-204ENST00000561662 EHMT2Q96KQ7 1210 aa30.6■■■□□ 2.49
COMMD4-204ENST00000561662 C9orf84Q5VXU9 1444 aa30.59■■■□□ 2.49
COMMD4-204ENST00000561662 PREX1Q8TCU6 1659 aa30.58■■■□□ 2.49
COMMD4-204ENST00000561662 EFCAB2Q5VUJ9 269 aa30.54■■■□□ 2.48
COMMD4-204ENST00000561662 MYT1LQ9UL68 1186 aa30.52■■■□□ 2.48
COMMD4-204ENST00000561662 EEA1Q15075 1411 aa30.52■■■□□ 2.48
COMMD4-204ENST00000561662 STRCQ7RTU9 1775 aa30.51■■■□□ 2.48
COMMD4-204ENST00000561662 AFAP1Q8N556 730 aa30.5■■■□□ 2.47
COMMD4-204ENST00000561662 UHRF1BP1Q6BDS2 1440 aa30.47■■■□□ 2.47
COMMD4-204ENST00000561662 MYO5CQ9NQX4 1742 aa30.47■■■□□ 2.47
COMMD4-204ENST00000561662 DMRT2Q9Y5R5 561 aa30.47■■■□□ 2.47
COMMD4-204ENST00000561662 KIF14Q15058 1648 aa30.46■■■□□ 2.47
COMMD4-204ENST00000561662 SOCS7O14512 581 aa30.44■■■□□ 2.46
COMMD4-204ENST00000561662 ZNF518AQ6AHZ1 1483 aa30.43■■■□□ 2.46
COMMD4-204ENST00000561662 ARHGAP5Q13017 1502 aa30.42■■■□□ 2.46
COMMD4-204ENST00000561662 UBTFP17480 764 aaKnown RBP30.37■■■□□ 2.45
COMMD4-204ENST00000561662 CDK11AQ9UQ88 783 aaPredicted RBP30.37■■■□□ 2.45
COMMD4-204ENST00000561662 KDM5CP41229 1560 aa30.37■■■□□ 2.45
COMMD4-204ENST00000561662 DIP2CQ9Y2E4 1556 aa30.37■■■□□ 2.45
COMMD4-204ENST00000561662 FMN1Q68DA7 1419 aa30.34■■■□□ 2.45
COMMD4-204ENST00000561662 C3P01024 1663 aa30.33■■■□□ 2.45
COMMD4-204ENST00000561662 TROQ12816 1431 aaPredicted RBP30.32■■■□□ 2.44
COMMD4-204ENST00000561662 SETD1BQ9UPS6 1966 aaKnown RBP30.32■■■□□ 2.44
COMMD4-204ENST00000561662 ABCA6Q8N139 1617 aa30.32■■■□□ 2.44
COMMD4-204ENST00000561662 SPATA31D1Q6ZQQ2 1576 aa30.32■■■□□ 2.44
COMMD4-204ENST00000561662 ESF1Q9H501 851 aaKnown RBP30.31■■■□□ 2.44
COMMD4-204ENST00000561662 ARHGAP35Q9NRY4 1499 aa30.31■■■□□ 2.44
COMMD4-204ENST00000561662 PTPRTO14522 1441 aa30.3■■■□□ 2.44
COMMD4-204ENST00000561662 TRAPPC8Q9Y2L5 1435 aa30.27■■■□□ 2.44
COMMD4-204ENST00000561662 CLIP1P30622 1438 aa30.26■■■□□ 2.43
COMMD4-204ENST00000561662 LTBP4Q8N2S1 1624 aa30.25■■■□□ 2.43
COMMD4-204ENST00000561662 CDC42BPBQ9Y5S2 1711 aa30.23■■■□□ 2.43
COMMD4-204ENST00000561662 MLH3Q9UHC1 1453 aa30.23■■■□□ 2.43
COMMD4-204ENST00000561662 REREQ9P2R6 1566 aa30.23■■■□□ 2.43
COMMD4-204ENST00000561662 LRRIQ1Q96JM4 1722 aa30.22■■■□□ 2.43
COMMD4-204ENST00000561662 NCOA1Q15788 1441 aa30.18■■■□□ 2.42
COMMD4-204ENST00000561662 ABCC1P33527 1531 aa30.17■■■□□ 2.42
COMMD4-204ENST00000561662 AGLP35573 1532 aa30.17■■■□□ 2.42
COMMD4-204ENST00000561662 ITSN2Q9NZM3 1697 aa30.14■■■□□ 2.41
COMMD4-204ENST00000561662 PREX2Q70Z35 1606 aa30.13■■■□□ 2.41
COMMD4-204ENST00000561662 NCKAP5LQ9HCH0 1330 aa30.13■■■□□ 2.41
COMMD4-204ENST00000561662 CAMSAP1Q5T5Y3 1602 aa30.12■■■□□ 2.41
COMMD4-204ENST00000561662 KIDINS220Q9ULH0 1771 aa30.12■■■□□ 2.41
COMMD4-204ENST00000561662 ZNF777Q9ULD5 760 aaPredicted RBP30.1■■■□□ 2.41
COMMD4-204ENST00000561662 ZNF335Q9H4Z2 1342 aaPredicted RBP30.09■■■□□ 2.41
COMMD4-204ENST00000561662 CNTLNQ9NXG0 1405 aa30.09■■■□□ 2.41
COMMD4-204ENST00000561662 IQSEC2Q5JU85 1478 aa30.06■■■□□ 2.4
COMMD4-204ENST00000561662 UBAP1LF5GYI3 381 aa30.05■■■□□ 2.4
COMMD4-204ENST00000561662 ZMYM3Q14202 1370 aa30.04■■■□□ 2.4
COMMD4-204ENST00000561662 SAMD9LQ8IVG5 1584 aa30.02■■■□□ 2.4
COMMD4-204ENST00000561662 NPATQ14207 1427 aa30.01■■■□□ 2.39
COMMD4-204ENST00000561662 CDC42BPAQ5VT25 1732 aa30.01■■■□□ 2.39
COMMD4-204ENST00000561662 HNRNPMP52272 730 aaKnown RBP eCLIP30■■■□□ 2.39
COMMD4-204ENST00000561662 SUPT6HQ7KZ85 1726 aaKnown RBP29.99■■■□□ 2.39
COMMD4-204ENST00000561662 SPAG9O60271 1321 aaKnown RBP29.97■■■□□ 2.39
COMMD4-204ENST00000561662 SYCP2Q9BX26 1530 aa29.97■■■□□ 2.39
COMMD4-204ENST00000561662 CCDC18Q5T9S5 1454 aa29.97■■■□□ 2.39
COMMD4-204ENST00000561662 CASKIN1Q8WXD9 1431 aa29.96■■■□□ 2.39
COMMD4-204ENST00000561662 MROH2AA6NES4 1674 aa29.96■■■□□ 2.39
COMMD4-204ENST00000561662 CLTCQ00610 1675 aaKnown RBP29.95■■■□□ 2.38
COMMD4-204ENST00000561662 GGT6Q6P531 493 aa29.92■■■□□ 2.38
COMMD4-204ENST00000561662 MYO3AQ8NEV4 1616 aa29.91■■■□□ 2.38
COMMD4-204ENST00000561662 PKD2Q13563 968 aa29.89■■■□□ 2.38
COMMD4-204ENST00000561662 PTPRKQ15262 1439 aa29.88■■■□□ 2.37
COMMD4-204ENST00000561662 ATP7AQ04656 1500 aa29.87■■■□□ 2.37
COMMD4-204ENST00000561662 GPATCH8Q9UKJ3 1502 aaKnown RBP29.87■■■□□ 2.37
COMMD4-204ENST00000561662 CEP170BQ9Y4F5 1589 aaPredicted RBP29.87■■■□□ 2.37
COMMD4-204ENST00000561662 SCAF1Q9H7N4 1312 aaKnown RBP29.87■■■□□ 2.37
COMMD4-204ENST00000561662 ZNF142P52746 1687 aaPredicted RBP29.85■■■□□ 2.37
COMMD4-204ENST00000561662 PLA2R1Q13018 1463 aa29.85■■■□□ 2.37
COMMD4-204ENST00000561662 PPP6R1Q9UPN7 881 aa29.84■■■□□ 2.37
COMMD4-204ENST00000561662 A2MP01023 1474 aa29.84■■■□□ 2.37
COMMD4-204ENST00000561662 TCOF1Q13428 1488 aaKnown RBP29.84■■■□□ 2.37
COMMD4-204ENST00000561662 PIP4K2BP78356 416 aa29.82■■■□□ 2.36
COMMD4-204ENST00000561662 PLXNC1O60486 1568 aa29.81■■■□□ 2.36
COMMD4-204ENST00000561662 CFDP1Q9UEE9 299 aaPredicted RBP29.81■■■□□ 2.36
COMMD4-204ENST00000561662 INO80Q9ULG1 1556 aaPredicted RBP29.8■■■□□ 2.36
COMMD4-204ENST00000561662 HSPA1LP34931 641 aa29.79■■■□□ 2.36
COMMD4-204ENST00000561662 CHIC1Q5VXU3 224 aa29.79■■■□□ 2.36
COMMD4-204ENST00000561662 FYCO1Q9BQS8 1478 aa29.79■■■□□ 2.36
COMMD4-204ENST00000561662 KIAA1107Q9UPP5 1409 aa29.75■■■□□ 2.35
COMMD4-204ENST00000561662 CCNB3Q8WWL7 1395 aa29.74■■■□□ 2.35
COMMD4-204ENST00000561662 ZNF644Q9H582 1327 aaPredicted RBP29.72■■■□□ 2.35
COMMD4-204ENST00000561662 A2ML1A8K2U0 1454 aa29.71■■■□□ 2.35
COMMD4-204ENST00000561662 PLEKHH2Q8IVE3 1493 aa29.71■■■□□ 2.35
COMMD4-204ENST00000561662 MED1Q15648 1581 aaPredicted RBP29.7■■■□□ 2.35
COMMD4-204ENST00000561662 DNMT1P26358 1616 aaKnown RBP29.7■■■□□ 2.34
COMMD4-204ENST00000561662 FBXO31Q5XUX0 539 aaPredicted RBP29.69■■■□□ 2.34
COMMD4-204ENST00000561662 ADGBQ8N7X0 1667 aa29.65■■■□□ 2.34
COMMD4-204ENST00000561662 TOM1O60784 492 aa29.64■■■□□ 2.34
COMMD4-204ENST00000561662 SENP3Q9H4L4 574 aaPredicted RBP29.64■■■□□ 2.34
COMMD4-204ENST00000561662 MTUS2Q5JR59 1369 aa29.64■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms