RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
VPS13C-206ENST00000558338 NEUROD1Q13562 356 aa10.51□□□□□ -0.73
VPS13C-206ENST00000558338 TCOF1Q13428 1488 aaKnown RBP10.5□□□□□ -0.73
VPS13C-206ENST00000558338 EPRSP07814 1512 aaKnown RBP10.5□□□□□ -0.73
VPS13C-206ENST00000558338 KIAA0586Q9BVV6 1533 aa10.5□□□□□ -0.73
VPS13C-206ENST00000558338 KIAA0556O60303 1618 aa10.49□□□□□ -0.73
VPS13C-206ENST00000558338 MAGI1Q96QZ7 1491 aaPredicted RBP10.49□□□□□ -0.73
VPS13C-206ENST00000558338 MIER1Q8N108 512 aa10.49□□□□□ -0.73
VPS13C-206ENST00000558338 AKNAQ7Z591 1439 aa10.48□□□□□ -0.73
VPS13C-206ENST00000558338 GCC2Q8IWJ2 1684 aa10.48□□□□□ -0.73
VPS13C-206ENST00000558338 MIA2Q96PC5 1412 aa10.48□□□□□ -0.73
VPS13C-206ENST00000558338 UACAQ9BZF9 1416 aa10.48□□□□□ -0.73
VPS13C-206ENST00000558338 GRIN2AQ12879 1464 aa10.47□□□□□ -0.73
VPS13C-206ENST00000558338 MAGI3Q5TCQ9 1506 aa10.47□□□□□ -0.73
VPS13C-206ENST00000558338 ERCC6Q03468 1493 aa10.47□□□□□ -0.73
VPS13C-206ENST00000558338 ZNF608Q9ULD9 1512 aaPredicted RBP10.47□□□□□ -0.73
VPS13C-206ENST00000558338 RAPGEF6Q8TEU7 1601 aa10.45□□□□□ -0.74
VPS13C-206ENST00000558338 NAIPQ13075 1403 aa10.44□□□□□ -0.74
VPS13C-206ENST00000558338 SYNJ2O15056 1496 aa10.43□□□□□ -0.74
VPS13C-206ENST00000558338 DISP1Q96F81 1524 aa10.43□□□□□ -0.74
VPS13C-206ENST00000558338 TPRNQ4KMQ1 711 aa10.43□□□□□ -0.74
VPS13C-206ENST00000558338 PELP1Q8IZL8 1130 aaKnown RBP10.43□□□□□ -0.74
VPS13C-206ENST00000558338 CDK13Q14004 1512 aaKnown RBP10.43□□□□□ -0.74
VPS13C-206ENST00000558338 TULP1O00294 542 aaPredicted RBP10.42□□□□□ -0.74
VPS13C-206ENST00000558338 PTPRKQ15262 1439 aa10.42□□□□□ -0.74
VPS13C-206ENST00000558338 POLA2Q14181 598 aa10.42□□□□□ -0.74
VPS13C-206ENST00000558338 GTF3C3Q9Y5Q9 886 aa10.41□□□□□ -0.74
VPS13C-206ENST00000558338 ITSN2Q9NZM3 1697 aa10.4□□□□□ -0.74
VPS13C-206ENST00000558338 TONSLQ96HA7 1378 aa10.4□□□□□ -0.74
VPS13C-206ENST00000558338 YTHDC1Q96MU7 727 aaKnown RBP10.39□□□□□ -0.75
VPS13C-206ENST00000558338 CDK11AQ9UQ88 783 aaPredicted RBP10.39□□□□□ -0.75
VPS13C-206ENST00000558338 CEP170Q5SW79 1584 aa10.39□□□□□ -0.75
VPS13C-206ENST00000558338 NUP153P49790 1475 aaKnown RBP10.39□□□□□ -0.75
VPS13C-206ENST00000558338 DNMT1P26358 1616 aaKnown RBP10.38□□□□□ -0.75
VPS13C-206ENST00000558338 ADCY10Q96PN6 1610 aa10.38□□□□□ -0.75
VPS13C-206ENST00000558338 SIN3AQ96ST3 1273 aa10.38□□□□□ -0.75
VPS13C-206ENST00000558338 NUP160Q12769 1436 aa10.37□□□□□ -0.75
VPS13C-206ENST00000558338 CARMIL2Q6F5E8 1435 aa10.37□□□□□ -0.75
VPS13C-206ENST00000558338 ROCK1Q13464 1354 aa10.37□□□□□ -0.75
VPS13C-206ENST00000558338 PPP1R15AO75807 674 aaPredicted RBP10.36□□□□□ -0.75
VPS13C-206ENST00000558338 AKT1S1Q96B36 256 aa10.36□□□□□ -0.75
VPS13C-206ENST00000558338 PLSCR2Q9NRY7 297 aa10.35□□□□□ -0.75
VPS13C-206ENST00000558338 TROQ12816 1431 aaPredicted RBP10.35□□□□□ -0.75
VPS13C-206ENST00000558338 DAPK1P53355 1430 aa10.34□□□□□ -0.75
VPS13C-206ENST00000558338 PIP4P2Q8N4L2 257 aa10.34□□□□□ -0.75
VPS13C-206ENST00000558338 CHMP7Q8WUX9 453 aaPredicted RBP10.34□□□□□ -0.75
VPS13C-206ENST00000558338 ADGBQ8N7X0 1667 aa10.34□□□□□ -0.75
VPS13C-206ENST00000558338 HAP1P54257 671 aaPredicted RBP10.34□□□□□ -0.75
VPS13C-206ENST00000558338 CROCC2H7BZ55 1655 aa10.31□□□□□ -0.76
VPS13C-206ENST00000558338 ABCA8O94911 1581 aa10.3□□□□□ -0.76
VPS13C-206ENST00000558338 ABCC5O15440 1437 aa10.3□□□□□ -0.76
VPS13C-206ENST00000558338 KIF14Q15058 1648 aa10.3□□□□□ -0.76
VPS13C-206ENST00000558338 HAX1O00165 279 aa10.3□□□□□ -0.76
VPS13C-206ENST00000558338 FKBP8Q14318 412 aa10.3□□□□□ -0.76
VPS13C-206ENST00000558338 RRP7BPQ9NSQ0 103 aa10.3□□□□□ -0.76
VPS13C-206ENST00000558338 CAMSAP2Q08AD1 1489 aa10.29□□□□□ -0.76
VPS13C-206ENST00000558338 KDM6BO15054 1643 aa10.29□□□□□ -0.76
VPS13C-206ENST00000558338 KDM5BQ9UGL1 1544 aa10.29□□□□□ -0.76
VPS13C-206ENST00000558338 HOMEZQ8IX15 550 aa10.28□□□□□ -0.76
VPS13C-206ENST00000558338 ADGRL2O95490 1459 aa10.28□□□□□ -0.76
VPS13C-206ENST00000558338 PLB1Q6P1J6 1458 aa10.28□□□□□ -0.76
VPS13C-206ENST00000558338 TRIM52Q96A61 297 aa10.27□□□□□ -0.76
VPS13C-206ENST00000558338 CHIC2Q9UKJ5 165 aa10.27□□□□□ -0.76
VPS13C-206ENST00000558338 DENND4BO75064 1496 aaPredicted RBP10.27□□□□□ -0.77
VPS13C-206ENST00000558338 JPH4Q96JJ6 628 aa10.27□□□□□ -0.77
VPS13C-206ENST00000558338 GPATCH8Q9UKJ3 1502 aaKnown RBP10.27□□□□□ -0.77
VPS13C-206ENST00000558338 PRG4Q92954 1404 aaPredicted RBP10.26□□□□□ -0.77
VPS13C-206ENST00000558338 REM2Q8IYK8 340 aaPredicted RBP10.26□□□□□ -0.77
VPS13C-206ENST00000558338 SHANK2Q9UPX8 1470 aa10.26□□□□□ -0.77
VPS13C-206ENST00000558338 MPHOSPH9Q99550 1183 aa10.25□□□□□ -0.77
VPS13C-206ENST00000558338 ARID3CA6NKF2 412 aa10.25□□□□□ -0.77
VPS13C-206ENST00000558338 CCER2I3L3R5 266 aa10.25□□□□□ -0.77
VPS13C-206ENST00000558338 CDC42BPAQ5VT25 1732 aa10.24□□□□□ -0.77
VPS13C-206ENST00000558338 FBLN2P98095 1184 aa10.24□□□□□ -0.77
VPS13C-206ENST00000558338 DDX10Q13206 875 aaKnown RBP10.24□□□□□ -0.77
VPS13C-206ENST00000558338 CFDP1Q9UEE9 299 aaPredicted RBP10.24□□□□□ -0.77
VPS13C-206ENST00000558338 RPRD2Q5VT52 1461 aaKnown RBP10.24□□□□□ -0.77
VPS13C-206ENST00000558338 ANP32CO43423 234 aa10.23□□□□□ -0.77
VPS13C-206ENST00000558338 MYCNP04198 464 aaPredicted RBP10.23□□□□□ -0.77
VPS13C-206ENST00000558338 ABCC10Q5T3U5 1492 aa10.22□□□□□ -0.77
VPS13C-206ENST00000558338 ANKRD30AQ9BXX3 1397 aa10.22□□□□□ -0.77
VPS13C-206ENST00000558338 NCOA1Q15788 1441 aa10.22□□□□□ -0.77
VPS13C-206ENST00000558338 ANKRD30BQ9BXX2 1392 aa10.21□□□□□ -0.77
VPS13C-206ENST00000558338 ARHGEF5Q12774 1597 aa10.21□□□□□ -0.77
VPS13C-206ENST00000558338 ATP10BO94823 1461 aa10.21□□□□□ -0.77
VPS13C-206ENST00000558338 PLEKHD1A6NEE1 506 aa10.21□□□□□ -0.78
VPS13C-206ENST00000558338 TEX14Q8IWB6 1497 aa10.2□□□□□ -0.78
VPS13C-206ENST00000558338 CHD1O14646 1710 aa10.2□□□□□ -0.78
VPS13C-206ENST00000558338 SHROOM2Q13796 1616 aa10.2□□□□□ -0.78
VPS13C-206ENST00000558338 PZPP20742 1482 aa10.19□□□□□ -0.78
VPS13C-206ENST00000558338 ZNF644Q9H582 1327 aaPredicted RBP10.19□□□□□ -0.78
VPS13C-206ENST00000558338 KDM5DQ9BY66 1539 aa10.19□□□□□ -0.78
VPS13C-206ENST00000558338 POLR1AO95602 1720 aaPredicted RBP10.19□□□□□ -0.78
VPS13C-206ENST00000558338 PREX2Q70Z35 1606 aa10.19□□□□□ -0.78
VPS13C-206ENST00000558338 FXR2P51116 673 aaKnown RBP eCLIP10.18□□□□□ -0.782e-7■■■■■ 28.3
VPS13C-206ENST00000558338 EIF4G2P78344 907 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS13C-206ENST00000558338 PTPRGP23470 1445 aa10.18□□□□□ -0.78
VPS13C-206ENST00000558338 C9orf84Q5VXU9 1444 aa10.17□□□□□ -0.78
VPS13C-206ENST00000558338 KIAA1107Q9UPP5 1409 aa10.17□□□□□ -0.78
VPS13C-206ENST00000558338 PITPNM1O00562 1244 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms