RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-217	ENST00000555022	ZNF644	Q9H582	1327 aa	Predicted RBP	11.81	□□□□□ -0.52
SYNE2-217	ENST00000555022	CC2D1B	Q5T0F9	858 aa	Known RBP	11.81	□□□□□ -0.52
SYNE2-217	ENST00000555022	CRBN	Q96SW2	442 aa		11.81	□□□□□ -0.52
SYNE2-217	ENST00000555022	FRAT2	O75474	233 aa	Predicted RBP	11.8	□□□□□ -0.52
SYNE2-217	ENST00000555022	C20orf194	Q5TEA3	1177 aa		11.8	□□□□□ -0.52
SYNE2-217	ENST00000555022	CFTR	P13569	1480 aa		11.8	□□□□□ -0.52
SYNE2-217	ENST00000555022	FMN1	Q68DA7	1419 aa		11.79	□□□□□ -0.52
SYNE2-217	ENST00000555022	SPRYD3	Q8NCJ5	442 aa		11.79	□□□□□ -0.52
SYNE2-217	ENST00000555022	GSE1	Q14687	1217 aa		11.79	□□□□□ -0.52
SYNE2-217	ENST00000555022	BACH2	Q9BYV9	841 aa		11.78	□□□□□ -0.52
SYNE2-217	ENST00000555022	SMG6	Q86US8	1419 aa	Known RBP	11.77	□□□□□ -0.53
SYNE2-217	ENST00000555022	RAD54L2	Q9Y4B4	1467 aa		11.77	□□□□□ -0.53
SYNE2-217	ENST00000555022	SLK	Q9H2G2	1235 aa	Predicted RBP	11.76	□□□□□ -0.53
SYNE2-217	ENST00000555022	PNISR	Q8TF01	805 aa	Known RBP	11.76	□□□□□ -0.53
SYNE2-217	ENST00000555022	HFM1	A2PYH4	1435 aa		11.76	□□□□□ -0.53
SYNE2-217	ENST00000555022	PPM1G	O15355	546 aa	Predicted RBP	11.75	□□□□□ -0.53
SYNE2-217	ENST00000555022	NCOA1	Q15788	1441 aa		11.75	□□□□□ -0.53
SYNE2-217	ENST00000555022	TCERG1	O14776	1098 aa	Known RBP	11.75	□□□□□ -0.53
SYNE2-217	ENST00000555022	CARD11	Q9BXL7	1154 aa		11.75	□□□□□ -0.53
SYNE2-217	ENST00000555022	PTPN23	Q9H3S7	1636 aa		11.74	□□□□□ -0.53
SYNE2-217	ENST00000555022	RGL3	Q3MIN7	710 aa		11.74	□□□□□ -0.53
SYNE2-217	ENST00000555022	KDM5B	Q9UGL1	1544 aa		11.74	□□□□□ -0.53
SYNE2-217	ENST00000555022	FGD5	Q6ZNL6	1462 aa		11.74	□□□□□ -0.53
SYNE2-217	ENST00000555022	BIVM-ERCC5	R4GMW8	1640 aa		11.73	□□□□□ -0.53
SYNE2-217	ENST00000555022	ST20-MTHFS	A0A0A6YYL1	179 aa		11.73	□□□□□ -0.53
SYNE2-217	ENST00000555022	NCOA2	Q15596	1464 aa		11.73	□□□□□ -0.53
SYNE2-217	ENST00000555022	GZF1	Q9H116	711 aa	Predicted RBP	11.73	□□□□□ -0.53
SYNE2-217	ENST00000555022	DCAF11	Q8TEB1	546 aa		11.72	□□□□□ -0.53
SYNE2-217	ENST00000555022	USP47	Q96K76	1375 aa		11.72	□□□□□ -0.53
SYNE2-217	ENST00000555022	KDM6B	O15054	1643 aa		11.72	□□□□□ -0.53
SYNE2-217	ENST00000555022	TDRD9	Q8NDG6	1382 aa	Known RBP	11.71	□□□□□ -0.53
SYNE2-217	ENST00000555022	PKD2	Q13563	968 aa		11.7	□□□□□ -0.54
SYNE2-217	ENST00000555022	POGK	Q9P215	609 aa		11.7	□□□□□ -0.54
SYNE2-217	ENST00000555022	MYOM3	Q5VTT5	1437 aa		11.69	□□□□□ -0.54
SYNE2-217	ENST00000555022	DHX29	Q7Z478	1369 aa	Known RBP	11.68	□□□□□ -0.54
SYNE2-217	ENST00000555022	DENND4B	O75064	1496 aa	Predicted RBP	11.67	□□□□□ -0.54
SYNE2-217	ENST00000555022	CASKIN1	Q8WXD9	1431 aa		11.67	□□□□□ -0.54
SYNE2-217	ENST00000555022	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.66	□□□□□ -0.54
SYNE2-217	ENST00000555022	CCDC146	Q8IYE0	955 aa		11.66	□□□□□ -0.54
SYNE2-217	ENST00000555022	UBE2Q2	Q8WVN8	375 aa		11.66	□□□□□ -0.54
SYNE2-217	ENST00000555022	MAP3K1	Q13233	1512 aa		11.65	□□□□□ -0.54
SYNE2-217	ENST00000555022	WASHC2C	Q9Y4E1	1318 aa		11.65	□□□□□ -0.54
SYNE2-217	ENST00000555022	DDRGK1	Q96HY6	314 aa		11.65	□□□□□ -0.54
SYNE2-217	ENST00000555022	PEG3	Q9GZU2	1588 aa		11.65	□□□□□ -0.55
SYNE2-217	ENST00000555022	RNF123	Q5XPI4	1314 aa		11.64	□□□□□ -0.55
SYNE2-217	ENST00000555022	USP35	Q9P2H5	1018 aa		11.64	□□□□□ -0.55
SYNE2-217	ENST00000555022	NCAPD3	P42695	1498 aa		11.63	□□□□□ -0.55
SYNE2-217	ENST00000555022	FYCO1	Q9BQS8	1478 aa		11.63	□□□□□ -0.55
SYNE2-217	ENST00000555022	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
SYNE2-217	ENST00000555022	VSIG10	Q8N0Z9	540 aa		11.62	□□□□□ -0.55
SYNE2-217	ENST00000555022	CFAP43	Q8NDM7	1665 aa		11.61	□□□□□ -0.55
SYNE2-217	ENST00000555022	ANKRD30B	Q9BXX2	1392 aa		11.61	□□□□□ -0.55
SYNE2-217	ENST00000555022	NEUROD2	Q15784	382 aa		11.61	□□□□□ -0.55
SYNE2-217	ENST00000555022	ARID3A	Q99856	593 aa		11.61	□□□□□ -0.55
SYNE2-217	ENST00000555022	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.6	□□□□□ -0.55
SYNE2-217	ENST00000555022	RRAGD	Q9NQL2	400 aa	Predicted RBP	11.6	□□□□□ -0.55
SYNE2-217	ENST00000555022	SEC24B	O95487	1268 aa		11.59	□□□□□ -0.55
SYNE2-217	ENST00000555022	NBPF1	Q3BBV0	1214 aa		11.59	□□□□□ -0.55
SYNE2-217	ENST00000555022	CDK13	Q14004	1512 aa	Known RBP	11.59	□□□□□ -0.55
SYNE2-217	ENST00000555022	CANX	P27824	592 aa	Known RBP	11.59	□□□□□ -0.55
SYNE2-217	ENST00000555022	SENP3	Q9H4L4	574 aa	Predicted RBP	11.58	□□□□□ -0.56
SYNE2-217	ENST00000555022	MS4A1	P11836	297 aa		11.58	□□□□□ -0.56
SYNE2-217	ENST00000555022	PANK2	Q9BZ23	570 aa		11.57	□□□□□ -0.56
SYNE2-217	ENST00000555022	ADAMTS8	Q9UP79	889 aa		11.57	□□□□□ -0.56
SYNE2-217	ENST00000555022	BCAR3	O75815	825 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	FAM161A	Q3B820	660 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	C8orf34	Q49A92	452 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	BCL2L13	Q9BXK5	485 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	KIF15	Q9NS87	1388 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	MAGI3	Q5TCQ9	1506 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	NLRP13	Q86W25	1043 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	PKNOX2	Q96KN3	472 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	PANK3	Q9H999	370 aa		11.56	□□□□□ -0.56
SYNE2-217	ENST00000555022	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.55	□□□□□ -0.56
SYNE2-217	ENST00000555022	HMGXB3	Q12766	1538 aa		11.55	□□□□□ -0.56
SYNE2-217	ENST00000555022	SPATA31E1	Q6ZUB1	1445 aa		11.55	□□□□□ -0.56
SYNE2-217	ENST00000555022	TNNT2	P45379	298 aa	Predicted RBP	11.54	□□□□□ -0.56
SYNE2-217	ENST00000555022	KTN1	Q86UP2	1357 aa	Known RBP	11.54	□□□□□ -0.56
SYNE2-217	ENST00000555022	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.54	□□□□□ -0.56
SYNE2-217	ENST00000555022	WDR43	Q15061	677 aa	Known RBP eCLIP	11.54	□□□□□ -0.56
SYNE2-217	ENST00000555022	SNAPC4	Q5SXM2	1469 aa		11.54	□□□□□ -0.56
SYNE2-217	ENST00000555022	RPRD2	Q5VT52	1461 aa	Known RBP	11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	TEX14	Q8IWB6	1497 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	ZBTB7C	A1YPR0	619 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	CLUAP1	Q96AJ1	413 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	BCORL1	Q5H9F3	1711 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	ROCK2	O75116	1388 aa	Known RBP	11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	CADPS	Q9ULU8	1353 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	FBLN2	P98095	1184 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	PANK1	Q8TE04	598 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	COG6	Q9Y2V7	657 aa		11.53	□□□□□ -0.56
SYNE2-217	ENST00000555022	NES	P48681	1621 aa		11.52	□□□□□ -0.56
SYNE2-217	ENST00000555022	FOXD4L1	Q9NU39	408 aa		11.52	□□□□□ -0.57
SYNE2-217	ENST00000555022	RALBP1	Q15311	655 aa		11.51	□□□□□ -0.57
SYNE2-217	ENST00000555022	RRP7A	Q9Y3A4	280 aa	Known RBP	11.51	□□□□□ -0.57
SYNE2-217	ENST00000555022	NUP155	O75694	1391 aa		11.51	□□□□□ -0.57
SYNE2-217	ENST00000555022	IGHD	P01880	384 aa		11.51	□□□□□ -0.57
SYNE2-217	ENST00000555022	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.51	□□□□□ -0.57
SYNE2-217	ENST00000555022	RSPH6A	Q9H0K4	717 aa		11.5	□□□□□ -0.57
SYNE2-217	ENST00000555022	TNN	Q9UQP3	1299 aa		11.5	□□□□□ -0.57

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