RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 FBLN2P98095 1184 aa17.26■□□□□ 0.35
SHMT2-207ENST00000553837 PLB1Q6P1J6 1458 aa17.26■□□□□ 0.35
SHMT2-207ENST00000553837 PRG4Q92954 1404 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-207ENST00000553837 ABCC5O15440 1437 aa17.24■□□□□ 0.35
SHMT2-207ENST00000553837 DAPK1P53355 1430 aa17.24■□□□□ 0.35
SHMT2-207ENST00000553837 NUP160Q12769 1436 aa17.23■□□□□ 0.35
SHMT2-207ENST00000553837 TRIM52Q96A61 297 aa17.23■□□□□ 0.35
SHMT2-207ENST00000553837 DNMT1P26358 1616 aaKnown RBP17.21■□□□□ 0.35
SHMT2-207ENST00000553837 JPH4Q96JJ6 628 aa17.2■□□□□ 0.34
SHMT2-207ENST00000553837 MPHOSPH9Q99550 1183 aa17.2■□□□□ 0.34
SHMT2-207ENST00000553837 FOXD1Q16676 465 aa17.19■□□□□ 0.34
SHMT2-207ENST00000553837 RBM19Q9Y4C8 960 aaKnown RBP17.19■□□□□ 0.34
SHMT2-207ENST00000553837 TROQ12816 1431 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-207ENST00000553837 FKBP8Q14318 412 aa17.18■□□□□ 0.34
SHMT2-207ENST00000553837 KIF14Q15058 1648 aa17.18■□□□□ 0.34
SHMT2-207ENST00000553837 ROCK1Q13464 1354 aa17.18■□□□□ 0.34
SHMT2-207ENST00000553837 CDK11AQ9UQ88 783 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-207ENST00000553837 BCANQ96GW7 911 aa17.17■□□□□ 0.34
SHMT2-207ENST00000553837 GPATCH8Q9UKJ3 1502 aaKnown RBP17.15■□□□□ 0.34
SHMT2-207ENST00000553837 CARMIL2Q6F5E8 1435 aa17.14■□□□□ 0.33
SHMT2-207ENST00000553837 CAMSAP2Q08AD1 1489 aa17.14■□□□□ 0.33
SHMT2-207ENST00000553837 ADCY10Q96PN6 1610 aa17.12■□□□□ 0.33
SHMT2-207ENST00000553837 NEFLP07196 543 aa17.12■□□□□ 0.33
SHMT2-207ENST00000553837 CFDP1Q9UEE9 299 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-207ENST00000553837 ABCA8O94911 1581 aa17.11■□□□□ 0.33
SHMT2-207ENST00000553837 ANKRD30BQ9BXX2 1392 aa17.1■□□□□ 0.33
SHMT2-207ENST00000553837 L3MBTL2Q969R5 705 aa17.09■□□□□ 0.33
SHMT2-207ENST00000553837 ITSN2Q9NZM3 1697 aa17.09■□□□□ 0.33
SHMT2-207ENST00000553837 ZNF777Q9ULD5 760 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-207ENST00000553837 ATP10BO94823 1461 aa17.08■□□□□ 0.33
SHMT2-207ENST00000553837 NCOA1Q15788 1441 aa17.07■□□□□ 0.32
SHMT2-207ENST00000553837 HSPA5P11021 654 aaKnown RBP17.06■□□□□ 0.32
SHMT2-207ENST00000553837 PZPP20742 1482 aa17.05■□□□□ 0.32
SHMT2-207ENST00000553837 ABCC10Q5T3U5 1492 aa17.05■□□□□ 0.32
SHMT2-207ENST00000553837 RPRD2Q5VT52 1461 aaKnown RBP17.05■□□□□ 0.32
SHMT2-207ENST00000553837 CROCC2H7BZ55 1655 aa17.04■□□□□ 0.32
SHMT2-207ENST00000553837 SLC4A1APQ9BWU0 796 aaKnown RBP17.04■□□□□ 0.32
SHMT2-207ENST00000553837 CDC42BPAQ5VT25 1732 aa17.04■□□□□ 0.32
SHMT2-207ENST00000553837 ADGBQ8N7X0 1667 aa17.04■□□□□ 0.32
SHMT2-207ENST00000553837 ANP32CO43423 234 aa17.04■□□□□ 0.32
SHMT2-207ENST00000553837 DNAJC5Q9H3Z4 198 aa17.04■□□□□ 0.32
SHMT2-207ENST00000553837 TEX14Q8IWB6 1497 aa17.03■□□□□ 0.32
SHMT2-207ENST00000553837 WASHC2AQ641Q2 1341 aa17.03■□□□□ 0.32
SHMT2-207ENST00000553837 CCER2I3L3R5 266 aa17.03■□□□□ 0.32
SHMT2-207ENST00000553837 ADGRL2O95490 1459 aa17.03■□□□□ 0.32
SHMT2-207ENST00000553837 NBPF8Q3BBV2 869 aa17.02■□□□□ 0.32
SHMT2-207ENST00000553837 PLEKHD1A6NEE1 506 aa17.02■□□□□ 0.31
SHMT2-207ENST00000553837 MYT1LQ9UL68 1186 aa17■□□□□ 0.31
SHMT2-207ENST00000553837 C11orf95C9JLR9 678 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-207ENST00000553837 MSH5O43196 834 aa16.98■□□□□ 0.31
SHMT2-207ENST00000553837 FANCIQ9NVI1 1328 aa16.98■□□□□ 0.31
SHMT2-207ENST00000553837 EIF4G2P78344 907 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHMT2-207ENST00000553837 PTPRGP23470 1445 aa16.97■□□□□ 0.31
SHMT2-207ENST00000553837 CHD1O14646 1710 aa16.97■□□□□ 0.31
SHMT2-207ENST00000553837 ANKRD30AQ9BXX3 1397 aa16.95■□□□□ 0.3
SHMT2-207ENST00000553837 ANKRD50Q9ULJ7 1429 aa16.94■□□□□ 0.3
SHMT2-207ENST00000553837 C9orf84Q5VXU9 1444 aa16.93■□□□□ 0.3
SHMT2-207ENST00000553837 KIAA1107Q9UPP5 1409 aa16.93■□□□□ 0.3
SHMT2-207ENST00000553837 PKD2Q13563 968 aa16.92■□□□□ 0.3
SHMT2-207ENST00000553837 HNRNPMP52272 730 aaKnown RBP eCLIP16.92■□□□□ 0.3
SHMT2-207ENST00000553837 SHANK2Q9UPX8 1470 aa16.91■□□□□ 0.3
SHMT2-207ENST00000553837 SPATA31E1Q6ZUB1 1445 aa16.91■□□□□ 0.3
SHMT2-207ENST00000553837 MBD5Q9P267 1494 aa16.9■□□□□ 0.3
SHMT2-207ENST00000553837 ERCC6L2Q5T890 1561 aa16.9■□□□□ 0.3
SHMT2-207ENST00000553837 CCDC7Q96M83 1385 aa16.89■□□□□ 0.3
SHMT2-207ENST00000553837 CDC42BPBQ9Y5S2 1711 aa16.89■□□□□ 0.29
SHMT2-207ENST00000553837 SHROOM2Q13796 1616 aa16.88■□□□□ 0.29
SHMT2-207ENST00000553837 SAMD9LQ8IVG5 1584 aa16.88■□□□□ 0.29
SHMT2-207ENST00000553837 CNTLNQ9NXG0 1405 aa16.88■□□□□ 0.29
SHMT2-207ENST00000553837 NUP155O75694 1391 aa16.86■□□□□ 0.29
SHMT2-207ENST00000553837 ARHGEF5Q12774 1597 aa16.86■□□□□ 0.29
SHMT2-207ENST00000553837 PREX2Q70Z35 1606 aa16.85■□□□□ 0.29
SHMT2-207ENST00000553837 TSPY4P0CV99 314 aa16.85■□□□□ 0.29
SHMT2-207ENST00000553837 TSPY10P0CW01 314 aa16.85■□□□□ 0.29
SHMT2-207ENST00000553837 KIF15Q9NS87 1388 aa16.85■□□□□ 0.29
SHMT2-207ENST00000553837 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
SHMT2-207ENST00000553837 KIF7Q2M1P5 1343 aa16.84■□□□□ 0.29
SHMT2-207ENST00000553837 TTC37Q6PGP7 1564 aa16.83■□□□□ 0.29
SHMT2-207ENST00000553837 KDM5DQ9BY66 1539 aa16.83■□□□□ 0.28
SHMT2-207ENST00000553837 CCDC141Q6ZP82 1450 aa16.81■□□□□ 0.28
SHMT2-207ENST00000553837 ZNF326Q5BKZ1 582 aaKnown RBP16.81■□□□□ 0.28
SHMT2-207ENST00000553837 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.81■□□□□ 0.28
SHMT2-207ENST00000553837 POLR1AO95602 1720 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-207ENST00000553837 BCORL1Q5H9F3 1711 aa16.79■□□□□ 0.28
SHMT2-207ENST00000553837 ERICH6BQ5W0A0 696 aa16.79■□□□□ 0.28
SHMT2-207ENST00000553837 SYCP2Q9BX26 1530 aa16.79■□□□□ 0.28
SHMT2-207ENST00000553837 PRKRIP1Q9H875 184 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-207ENST00000553837 ABCC2Q92887 1545 aa16.78■□□□□ 0.28
SHMT2-207ENST00000553837 USP47Q96K76 1375 aa16.76■□□□□ 0.27
SHMT2-207ENST00000553837 HNRNPUQ00839 825 aaKnown RBP eCLIP16.76■□□□□ 0.27
SHMT2-207ENST00000553837 ARHGAP5Q13017 1502 aa16.76■□□□□ 0.27
SHMT2-207ENST00000553837 OSCARQ8IYS5 282 aa16.75■□□□□ 0.27
SHMT2-207ENST00000553837 UBE2Q2Q8WVN8 375 aa16.75■□□□□ 0.27
SHMT2-207ENST00000553837 UHRF1BP1Q6BDS2 1440 aa16.75■□□□□ 0.27
SHMT2-207ENST00000553837 KDM5CP41229 1560 aa16.75■□□□□ 0.27
SHMT2-207ENST00000553837 DEKP35659 375 aaKnown RBP16.74■□□□□ 0.27
SHMT2-207ENST00000553837 FAM135AQ9P2D6 1515 aa16.74■□□□□ 0.27
SHMT2-207ENST00000553837 ANO8Q9HCE9 1232 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-207ENST00000553837 ARHGEF12Q9NZN5 1544 aa16.72■□□□□ 0.27
SHMT2-207ENST00000553837 RSPH4AQ5TD94 716 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms