RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 GRIN2BQ13224 1484 aa19.26■□□□□ 0.67
RAPGEF3-216ENST00000547856 GSE1Q14687 1217 aa19.26■□□□□ 0.67
RAPGEF3-216ENST00000547856 PRKRIP1Q9H875 184 aaPredicted RBP19.25■□□□□ 0.67
RAPGEF3-216ENST00000547856 MTUS2Q5JR59 1369 aa19.23■□□□□ 0.67
RAPGEF3-216ENST00000547856 PPM1GO15355 546 aaPredicted RBP19.23■□□□□ 0.67
RAPGEF3-216ENST00000547856 FGD6Q6ZV73 1430 aa19.23■□□□□ 0.67
RAPGEF3-216ENST00000547856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.23■□□□□ 0.67
RAPGEF3-216ENST00000547856 ADAMTS12P58397 1594 aa19.22■□□□□ 0.67
RAPGEF3-216ENST00000547856 FRAT1Q92837 279 aaPredicted RBP19.21■□□□□ 0.67
RAPGEF3-216ENST00000547856 PDE4AP27815 886 aa19.19■□□□□ 0.66
RAPGEF3-216ENST00000547856 ZNF608Q9ULD9 1512 aaPredicted RBP19.19■□□□□ 0.66
RAPGEF3-216ENST00000547856 IQGAP2Q13576 1575 aa19.18■□□□□ 0.66
RAPGEF3-216ENST00000547856 THOC2Q8NI27 1593 aaKnown RBP19.18■□□□□ 0.66
RAPGEF3-216ENST00000547856 NCOA2Q15596 1464 aa19.17■□□□□ 0.66
RAPGEF3-216ENST00000547856 SLC4A3P48751 1232 aa19.17■□□□□ 0.66
RAPGEF3-216ENST00000547856 NUDCQ9Y266 331 aa19.17■□□□□ 0.66
RAPGEF3-216ENST00000547856 MAGI3Q5TCQ9 1506 aa19.15■□□□□ 0.66
RAPGEF3-216ENST00000547856 PTPRKQ15262 1439 aa19.15■□□□□ 0.66
RAPGEF3-216ENST00000547856 NFKBIBQ15653 356 aa19.15■□□□□ 0.66
RAPGEF3-216ENST00000547856 SUPT6HQ7KZ85 1726 aaKnown RBP19.14■□□□□ 0.65
RAPGEF3-216ENST00000547856 WDR62O43379 1518 aa19.14■□□□□ 0.65
RAPGEF3-216ENST00000547856 CNTLNQ9NXG0 1405 aa19.14■□□□□ 0.65
RAPGEF3-216ENST00000547856 RSPH6AQ9H0K4 717 aa19.14■□□□□ 0.65
RAPGEF3-216ENST00000547856 EIF4G2P78344 907 aaKnown RBP eCLIP19.13■□□□□ 0.65
RAPGEF3-216ENST00000547856 IFT140Q96RY7 1462 aa19.13■□□□□ 0.65
RAPGEF3-216ENST00000547856 EHBP1L1Q8N3D4 1523 aa19.12■□□□□ 0.65
RAPGEF3-216ENST00000547856 MYOM3Q5VTT5 1437 aa19.12■□□□□ 0.65
RAPGEF3-216ENST00000547856 SMG6Q86US8 1419 aaKnown RBP19.12■□□□□ 0.65
RAPGEF3-216ENST00000547856 BACH2Q9BYV9 841 aa19.1■□□□□ 0.65
RAPGEF3-216ENST00000547856 SKAP1Q86WV1 359 aa19.1■□□□□ 0.65
RAPGEF3-216ENST00000547856 TCERG1O14776 1098 aaKnown RBP19.09■□□□□ 0.65
RAPGEF3-216ENST00000547856 UGGT2Q9NYU1 1516 aa19.09■□□□□ 0.65
RAPGEF3-216ENST00000547856 EXOC6Q8TAG9 804 aa19.09■□□□□ 0.65
RAPGEF3-216ENST00000547856 CCDC18Q5T9S5 1454 aa19.08■□□□□ 0.65
RAPGEF3-216ENST00000547856 ARHGEF11O15085 1522 aa19.08■□□□□ 0.65
RAPGEF3-216ENST00000547856 HECW1Q76N89 1606 aa19.08■□□□□ 0.64
RAPGEF3-216ENST00000547856 RNF123Q5XPI4 1314 aa19.08■□□□□ 0.64
RAPGEF3-216ENST00000547856 EPRSP07814 1512 aaKnown RBP19.06■□□□□ 0.64
RAPGEF3-216ENST00000547856 VSIG10Q8N0Z9 540 aa19.06■□□□□ 0.64
RAPGEF3-216ENST00000547856 PTPN23Q9H3S7 1636 aa19.06■□□□□ 0.64
RAPGEF3-216ENST00000547856 HFM1A2PYH4 1435 aa19.05■□□□□ 0.64
RAPGEF3-216ENST00000547856 DCAF11Q8TEB1 546 aa19.05■□□□□ 0.64
RAPGEF3-216ENST00000547856 CDK13Q14004 1512 aaKnown RBP19.05■□□□□ 0.64
RAPGEF3-216ENST00000547856 POLR3GLQ9BT43 218 aa19.04■□□□□ 0.64
RAPGEF3-216ENST00000547856 EIF4G3O43432 1585 aaKnown RBP19.04■□□□□ 0.64
RAPGEF3-216ENST00000547856 ARID3CA6NKF2 412 aa19.04■□□□□ 0.64
RAPGEF3-216ENST00000547856 NAIPQ13075 1403 aa19.02■□□□□ 0.64
RAPGEF3-216ENST00000547856 FAM43AQ8N2R8 423 aa19.02■□□□□ 0.64
RAPGEF3-216ENST00000547856 DAXXQ9UER7 740 aaPredicted RBP19.02■□□□□ 0.64
RAPGEF3-216ENST00000547856 CCDC7Q96M83 1385 aa19.02■□□□□ 0.64
RAPGEF3-216ENST00000547856 ZMYND15Q9H091 742 aa19.01■□□□□ 0.63
RAPGEF3-216ENST00000547856 KIAA0586Q9BVV6 1533 aa19.01■□□□□ 0.63
RAPGEF3-216ENST00000547856 DISP1Q96F81 1524 aa19■□□□□ 0.63
RAPGEF3-216ENST00000547856 ERCC6Q03468 1493 aa19■□□□□ 0.63
RAPGEF3-216ENST00000547856 GRIN2AQ12879 1464 aa18.99■□□□□ 0.63
RAPGEF3-216ENST00000547856 DDRGK1Q96HY6 314 aa18.99■□□□□ 0.63
RAPGEF3-216ENST00000547856 FRAT2O75474 233 aaPredicted RBP18.98■□□□□ 0.63
RAPGEF3-216ENST00000547856 GLIPR1L2Q4G1C9 344 aa18.98■□□□□ 0.63
RAPGEF3-216ENST00000547856 UACAQ9BZF9 1416 aa18.98■□□□□ 0.63
RAPGEF3-216ENST00000547856 KIAA0556O60303 1618 aa18.98■□□□□ 0.63
RAPGEF3-216ENST00000547856 KDM5BQ9UGL1 1544 aa18.97■□□□□ 0.63
RAPGEF3-216ENST00000547856 TCOF1Q13428 1488 aaKnown RBP18.97■□□□□ 0.63
RAPGEF3-216ENST00000547856 RRP1P56182 461 aaKnown RBP18.95■□□□□ 0.62
RAPGEF3-216ENST00000547856 CHIC2Q9UKJ5 165 aa18.94■□□□□ 0.62
RAPGEF3-216ENST00000547856 RRP7BPQ9NSQ0 103 aa18.94■□□□□ 0.62
RAPGEF3-216ENST00000547856 KIF7Q2M1P5 1343 aa18.93■□□□□ 0.62
RAPGEF3-216ENST00000547856 MS4A1P11836 297 aa18.93■□□□□ 0.62
RAPGEF3-216ENST00000547856 NCOA1Q15788 1441 aa18.92■□□□□ 0.62
RAPGEF3-216ENST00000547856 L3MBTL2Q969R5 705 aa18.92■□□□□ 0.62
RAPGEF3-216ENST00000547856 RRAGDQ9NQL2 400 aaPredicted RBP18.91■□□□□ 0.62
RAPGEF3-216ENST00000547856 NUP153P49790 1475 aaKnown RBP18.91■□□□□ 0.62
RAPGEF3-216ENST00000547856 FOXD1Q16676 465 aa18.9■□□□□ 0.62
RAPGEF3-216ENST00000547856 MIA2Q96PC5 1412 aa18.9■□□□□ 0.62
RAPGEF3-216ENST00000547856 MAGI1Q96QZ7 1491 aaPredicted RBP18.89■□□□□ 0.62
RAPGEF3-216ENST00000547856 ARXQ96QS3 562 aa18.89■□□□□ 0.61
RAPGEF3-216ENST00000547856 GCC2Q8IWJ2 1684 aa18.89■□□□□ 0.61
RAPGEF3-216ENST00000547856 CEP170Q5SW79 1584 aa18.89■□□□□ 0.61
RAPGEF3-216ENST00000547856 KDM6BO15054 1643 aa18.89■□□□□ 0.61
RAPGEF3-216ENST00000547856 RAPGEF6Q8TEU7 1601 aa18.89■□□□□ 0.61
RAPGEF3-216ENST00000547856 CHMP7Q8WUX9 453 aaPredicted RBP18.88■□□□□ 0.61
RAPGEF3-216ENST00000547856 PLIN1O60240 522 aa18.87■□□□□ 0.61
RAPGEF3-216ENST00000547856 TMC1Q8TDI8 760 aa18.87■□□□□ 0.61
RAPGEF3-216ENST00000547856 NAP1L5Q96NT1 182 aaPredicted RBP18.87■□□□□ 0.61
RAPGEF3-216ENST00000547856 RCAN3Q9UKA8 241 aa18.87■□□□□ 0.61
RAPGEF3-216ENST00000547856 SYNJ2O15056 1496 aa18.86■□□□□ 0.61
RAPGEF3-216ENST00000547856 FBLN2P98095 1184 aa18.85■□□□□ 0.61
RAPGEF3-216ENST00000547856 NBPF8Q3BBV2 869 aa18.84■□□□□ 0.61
RAPGEF3-216ENST00000547856 DENND4BO75064 1496 aaPredicted RBP18.84■□□□□ 0.61
RAPGEF3-216ENST00000547856 PLEKHG5O94827 1062 aa18.84■□□□□ 0.61
RAPGEF3-216ENST00000547856 PNISRQ8TF01 805 aaKnown RBP18.83■□□□□ 0.6
RAPGEF3-216ENST00000547856 ZNF644Q9H582 1327 aaPredicted RBP18.81■□□□□ 0.6
RAPGEF3-216ENST00000547856 HSP90AA2PQ14568 343 aaPredicted RBP18.81■□□□□ 0.6
RAPGEF3-216ENST00000547856 POGKQ9P215 609 aa18.81■□□□□ 0.6
RAPGEF3-216ENST00000547856 PLB1Q6P1J6 1458 aa18.81■□□□□ 0.6
RAPGEF3-216ENST00000547856 PRG4Q92954 1404 aaPredicted RBP18.79■□□□□ 0.6
RAPGEF3-216ENST00000547856 DAPK1P53355 1430 aa18.78■□□□□ 0.6
RAPGEF3-216ENST00000547856 NUP160Q12769 1436 aa18.78■□□□□ 0.6
RAPGEF3-216ENST00000547856 JPH4Q96JJ6 628 aa18.77■□□□□ 0.6
RAPGEF3-216ENST00000547856 PODXL2Q9NZ53 605 aa18.77■□□□□ 0.6
RAPGEF3-216ENST00000547856 CRBNQ96SW2 442 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms