RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SIGLEC1Q9BZZ2 1709 aa21.55■■□□□ 1.04
SCAF11-208ENST00000546534 MLECQ14165 292 aa21.54■■□□□ 1.04
SCAF11-208ENST00000546534 CERKQ8TCT0 537 aa21.54■■□□□ 1.04
SCAF11-208ENST00000546534 TTC37Q6PGP7 1564 aa21.53■■□□□ 1.04
SCAF11-208ENST00000546534 EFCAB5A4FU69 1503 aa21.53■■□□□ 1.04
SCAF11-208ENST00000546534 MAGI2Q86UL8 1455 aa21.52■■□□□ 1.03
SCAF11-208ENST00000546534 HECW1Q76N89 1606 aa21.49■■□□□ 1.03
SCAF11-208ENST00000546534 SCAPERQ9BY12 1400 aa21.48■■□□□ 1.03
SCAF11-208ENST00000546534 CDK13Q14004 1512 aaKnown RBP21.45■■□□□ 1.02
SCAF11-208ENST00000546534 PLCH2O75038 1416 aa21.45■■□□□ 1.02
SCAF11-208ENST00000546534 EEA1Q15075 1411 aa21.45■■□□□ 1.02
SCAF11-208ENST00000546534 FER1L4A9Z1Z3 1794 aa21.44■■□□□ 1.02
SCAF11-208ENST00000546534 ATP10AO60312 1499 aa21.42■■□□□ 1.02
SCAF11-208ENST00000546534 PPP4R3CPQ6ZMV5 832 aa21.42■■□□□ 1.02
SCAF11-208ENST00000546534 ARHGEF12Q9NZN5 1544 aa21.41■■□□□ 1.02
SCAF11-208ENST00000546534 CEBPAP49715 358 aaPredicted RBP21.41■■□□□ 1.02
SCAF11-208ENST00000546534 C9orf84Q5VXU9 1444 aa21.38■■□□□ 1.01
SCAF11-208ENST00000546534 EFCAB2Q5VUJ9 269 aa21.38■■□□□ 1.01
SCAF11-208ENST00000546534 PREX1Q8TCU6 1659 aa21.35■■□□□ 1.01
SCAF11-208ENST00000546534 ATP1B4Q9UN42 357 aaPredicted RBP21.35■■□□□ 1.01
SCAF11-208ENST00000546534 DMRT2Q9Y5R5 561 aa21.33■■□□□ 1.01
SCAF11-208ENST00000546534 AFAP1Q8N556 730 aa21.31■■□□□ 1
SCAF11-208ENST00000546534 ILDR2Q71H61 639 aa21.3■■□□□ 1
SCAF11-208ENST00000546534 DISP3Q9P2K9 1392 aa21.3■■□□□ 1
SCAF11-208ENST00000546534 MYO5CQ9NQX4 1742 aa21.29■■□□□ 1
SCAF11-208ENST00000546534 STRCQ7RTU9 1775 aa21.29■■□□□ 1
SCAF11-208ENST00000546534 ZNF518AQ6AHZ1 1483 aa21.29■■□□□ 1
SCAF11-208ENST00000546534 UHRF1BP1Q6BDS2 1440 aa21.29■■□□□ 1
SCAF11-208ENST00000546534 CDK11AQ9UQ88 783 aaPredicted RBP21.28■■□□□ 1
SCAF11-208ENST00000546534 KIF14Q15058 1648 aa21.27■■□□□ 1
SCAF11-208ENST00000546534 FMN1Q68DA7 1419 aa21.27■■□□□ 1
SCAF11-208ENST00000546534 MYT1LQ9UL68 1186 aa21.26■□□□□ 0.99
SCAF11-208ENST00000546534 KDM5CP41229 1560 aa21.26■□□□□ 0.99
SCAF11-208ENST00000546534 EHMT2Q96KQ7 1210 aa21.25■□□□□ 0.99
SCAF11-208ENST00000546534 ARHGAP5Q13017 1502 aa21.24■□□□□ 0.99
SCAF11-208ENST00000546534 TROQ12816 1431 aaPredicted RBP21.23■□□□□ 0.99
SCAF11-208ENST00000546534 UBTFP17480 764 aaKnown RBP21.23■□□□□ 0.99
SCAF11-208ENST00000546534 DIP2CQ9Y2E4 1556 aa21.23■□□□□ 0.99
SCAF11-208ENST00000546534 ARHGAP35Q9NRY4 1499 aa21.22■□□□□ 0.99
SCAF11-208ENST00000546534 SOCS7O14512 581 aa21.22■□□□□ 0.99
SCAF11-208ENST00000546534 PTPRTO14522 1441 aa21.21■□□□□ 0.99
SCAF11-208ENST00000546534 SETD1BQ9UPS6 1966 aaKnown RBP21.19■□□□□ 0.98
SCAF11-208ENST00000546534 REREQ9P2R6 1566 aa21.19■□□□□ 0.98
SCAF11-208ENST00000546534 CLIP1P30622 1438 aa21.19■□□□□ 0.98
SCAF11-208ENST00000546534 MLH3Q9UHC1 1453 aa21.18■□□□□ 0.98
SCAF11-208ENST00000546534 SCAF1Q9H7N4 1312 aaKnown RBP21.17■□□□□ 0.98
SCAF11-208ENST00000546534 ABCA6Q8N139 1617 aa21.17■□□□□ 0.98
SCAF11-208ENST00000546534 C3P01024 1663 aa21.16■□□□□ 0.98
SCAF11-208ENST00000546534 ESF1Q9H501 851 aaKnown RBP21.16■□□□□ 0.98
SCAF11-208ENST00000546534 TRAPPC8Q9Y2L5 1435 aa21.15■□□□□ 0.98
SCAF11-208ENST00000546534 AGLP35573 1532 aa21.14■□□□□ 0.98
SCAF11-208ENST00000546534 LTBP4Q8N2S1 1624 aa21.13■□□□□ 0.97
SCAF11-208ENST00000546534 CDC42BPBQ9Y5S2 1711 aa21.12■□□□□ 0.97
SCAF11-208ENST00000546534 LRRIQ1Q96JM4 1722 aa21.11■□□□□ 0.97
SCAF11-208ENST00000546534 ABCC1P33527 1531 aa21.1■□□□□ 0.97
SCAF11-208ENST00000546534 NCOA1Q15788 1441 aa21.1■□□□□ 0.97
SCAF11-208ENST00000546534 SPATA31D1Q6ZQQ2 1576 aa21.1■□□□□ 0.97
SCAF11-208ENST00000546534 KCNA4P22459 653 aa21.09■□□□□ 0.97
SCAF11-208ENST00000546534 PREX2Q70Z35 1606 aa21.08■□□□□ 0.97
SCAF11-208ENST00000546534 CNTLNQ9NXG0 1405 aa21.08■□□□□ 0.97
SCAF11-208ENST00000546534 IQSEC2Q5JU85 1478 aa21.07■□□□□ 0.96
SCAF11-208ENST00000546534 ITSN2Q9NZM3 1697 aa21.05■□□□□ 0.96
SCAF11-208ENST00000546534 KIDINS220Q9ULH0 1771 aa21.05■□□□□ 0.96
SCAF11-208ENST00000546534 CAMSAP1Q5T5Y3 1602 aa21.02■□□□□ 0.96
SCAF11-208ENST00000546534 NPATQ14207 1427 aa21.02■□□□□ 0.96
SCAF11-208ENST00000546534 ZMYM3Q14202 1370 aa21.01■□□□□ 0.95
SCAF11-208ENST00000546534 NCKAP5LQ9HCH0 1330 aa21.01■□□□□ 0.95
SCAF11-208ENST00000546534 CCDC18Q5T9S5 1454 aa21.01■□□□□ 0.95
SCAF11-208ENST00000546534 CASKIN1Q8WXD9 1431 aa21■□□□□ 0.95
SCAF11-208ENST00000546534 SAMD9LQ8IVG5 1584 aa20.99■□□□□ 0.95
SCAF11-208ENST00000546534 ZNF777Q9ULD5 760 aaPredicted RBP20.99■□□□□ 0.95
SCAF11-208ENST00000546534 ZNF335Q9H4Z2 1342 aaPredicted RBP20.99■□□□□ 0.95
SCAF11-208ENST00000546534 CDC42BPAQ5VT25 1732 aa20.98■□□□□ 0.95
SCAF11-208ENST00000546534 MROH2AA6NES4 1674 aa20.97■□□□□ 0.95
SCAF11-208ENST00000546534 SPAG9O60271 1321 aaKnown RBP20.97■□□□□ 0.95
SCAF11-208ENST00000546534 UBAP1LF5GYI3 381 aa20.95■□□□□ 0.94
SCAF11-208ENST00000546534 HNRNPMP52272 730 aaKnown RBP eCLIP20.95■□□□□ 0.94
SCAF11-208ENST00000546534 NCBP3Q53F19 620 aaKnown RBP20.94■□□□□ 0.94
SCAF11-208ENST00000546534 SYCP2Q9BX26 1530 aa20.94■□□□□ 0.94
SCAF11-208ENST00000546534 PKD2Q13563 968 aa20.92■□□□□ 0.94
SCAF11-208ENST00000546534 SUPT6HQ7KZ85 1726 aaKnown RBP20.92■□□□□ 0.94
SCAF11-208ENST00000546534 GPATCH8Q9UKJ3 1502 aaKnown RBP20.91■□□□□ 0.94
SCAF11-208ENST00000546534 ATP7AQ04656 1500 aa20.89■□□□□ 0.94
SCAF11-208ENST00000546534 PLA2R1Q13018 1463 aa20.89■□□□□ 0.94
SCAF11-208ENST00000546534 PTPRKQ15262 1439 aa20.89■□□□□ 0.94
SCAF11-208ENST00000546534 CLTCQ00610 1675 aaKnown RBP20.89■□□□□ 0.93
SCAF11-208ENST00000546534 TCOF1Q13428 1488 aaKnown RBP20.88■□□□□ 0.93
SCAF11-208ENST00000546534 GGT6Q6P531 493 aa20.88■□□□□ 0.93
SCAF11-208ENST00000546534 MYO3AQ8NEV4 1616 aa20.88■□□□□ 0.93
SCAF11-208ENST00000546534 A2MP01023 1474 aa20.88■□□□□ 0.93
SCAF11-208ENST00000546534 FYCO1Q9BQS8 1478 aa20.88■□□□□ 0.93
SCAF11-208ENST00000546534 ZNF142P52746 1687 aaPredicted RBP20.87■□□□□ 0.93
SCAF11-208ENST00000546534 PLXNC1O60486 1568 aa20.87■□□□□ 0.93
SCAF11-208ENST00000546534 KIAA1107Q9UPP5 1409 aa20.87■□□□□ 0.93
SCAF11-208ENST00000546534 CEP170BQ9Y4F5 1589 aaPredicted RBP20.86■□□□□ 0.93
SCAF11-208ENST00000546534 CFDP1Q9UEE9 299 aaPredicted RBP20.86■□□□□ 0.93
SCAF11-208ENST00000546534 MAPK8IP2Q13387 824 aaPredicted RBP20.85■□□□□ 0.93
SCAF11-208ENST00000546534 INO80Q9ULG1 1556 aaPredicted RBP20.85■□□□□ 0.93
SCAF11-208ENST00000546534 PLEKHH2Q8IVE3 1493 aa20.83■□□□□ 0.93
SCAF11-208ENST00000546534 CNKSR2Q8WXI2 1034 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms