RNA–Protein interactions for RNA: ENST00000545908.5

MTHFD1-202, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2 BASIC

Gene MTHFD1, Length 6,814 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-202ENST00000545908 FOXD1Q16676 465 aa11.89□□□□□ -0.51
MTHFD1-202ENST00000545908 PNNQ9H307 717 aaKnown RBP11.89□□□□□ -0.51
MTHFD1-202ENST00000545908 U2SURPO15042 1029 aaKnown RBP11.89□□□□□ -0.51
MTHFD1-202ENST00000545908 NESP48681 1621 aa11.88□□□□□ -0.51
MTHFD1-202ENST00000545908 HDGFL2Q7Z4V5 671 aaPredicted RBP11.88□□□□□ -0.51
MTHFD1-202ENST00000545908 CCDC136Q96JN2 1154 aa11.87□□□□□ -0.51
MTHFD1-202ENST00000545908 RSPH4AQ5TD94 716 aa11.87□□□□□ -0.51
MTHFD1-202ENST00000545908 ROCK2O75116 1388 aaKnown RBP11.87□□□□□ -0.51
MTHFD1-202ENST00000545908 NEUROD2Q15784 382 aa11.86□□□□□ -0.51
MTHFD1-202ENST00000545908 FAM69CQ0P6D2 419 aa11.86□□□□□ -0.51
MTHFD1-202ENST00000545908 NUTM2DQ5VT03 806 aaPredicted RBP11.86□□□□□ -0.51
MTHFD1-202ENST00000545908 RUSC2Q8N2Y8 1516 aa11.85□□□□□ -0.51
MTHFD1-202ENST00000545908 GRIN2BQ13224 1484 aa11.85□□□□□ -0.51
MTHFD1-202ENST00000545908 HMGXB3Q12766 1538 aa11.85□□□□□ -0.51
MTHFD1-202ENST00000545908 MPHOSPH9Q99550 1183 aa11.84□□□□□ -0.51
MTHFD1-202ENST00000545908 IFT140Q96RY7 1462 aa11.84□□□□□ -0.51
MTHFD1-202ENST00000545908 EIF3AQ14152 1382 aaKnown RBP11.84□□□□□ -0.51
MTHFD1-202ENST00000545908 UNC13AQ9UPW8 1703 aa11.83□□□□□ -0.51
MTHFD1-202ENST00000545908 SENP3-EIF4A1A0A087X0R7 540 aa11.83□□□□□ -0.51
MTHFD1-202ENST00000545908 MORC1Q86VD1 984 aa11.83□□□□□ -0.52
MTHFD1-202ENST00000545908 FTSJ3Q8IY81 847 aaKnown RBP11.83□□□□□ -0.52
MTHFD1-202ENST00000545908 CCDC9Q9Y3X0 531 aaKnown RBP11.83□□□□□ -0.52
MTHFD1-202ENST00000545908 CSB-PGBD3P0DP91 1061 aa11.83□□□□□ -0.52
MTHFD1-202ENST00000545908 AMER1Q5JTC6 1135 aaPredicted RBP11.82□□□□□ -0.52
MTHFD1-202ENST00000545908 MIER1Q8N108 512 aa11.81□□□□□ -0.52
MTHFD1-202ENST00000545908 IRX6P78412 446 aaPredicted RBP11.8□□□□□ -0.52
MTHFD1-202ENST00000545908 RAB3GAP2Q9H2M9 1393 aa11.79□□□□□ -0.52
MTHFD1-202ENST00000545908 RTF1Q92541 710 aaKnown RBP11.78□□□□□ -0.52
MTHFD1-202ENST00000545908 ARHGAP5Q13017 1502 aa11.77□□□□□ -0.52
MTHFD1-202ENST00000545908 SNAPC4Q5SXM2 1469 aa11.77□□□□□ -0.53
MTHFD1-202ENST00000545908 CUX1P39880 1505 aa11.76□□□□□ -0.53
MTHFD1-202ENST00000545908 CFTRP13569 1480 aa11.76□□□□□ -0.53
MTHFD1-202ENST00000545908 IGF1RP08069 1367 aa11.76□□□□□ -0.53
MTHFD1-202ENST00000545908 DNMBPQ6XZF7 1577 aa11.76□□□□□ -0.53
MTHFD1-202ENST00000545908 UACAQ9BZF9 1416 aa11.76□□□□□ -0.53
MTHFD1-202ENST00000545908 LAMC3Q9Y6N6 1575 aa11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 CASC1Q6TDU7 716 aa11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 HSPA5P11021 654 aaKnown RBP11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 OS9Q13438 667 aaPredicted RBP11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 NGDNQ8NEJ9 315 aaKnown RBP11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 TOPBP1Q92547 1522 aa11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 PRG4Q92954 1404 aaPredicted RBP11.75□□□□□ -0.53
MTHFD1-202ENST00000545908 SYNJ1O43426 1573 aa11.73□□□□□ -0.53
MTHFD1-202ENST00000545908 GOLGA2Q08379 1002 aa11.73□□□□□ -0.53
MTHFD1-202ENST00000545908 ANP32BQ92688 251 aaKnown RBP11.73□□□□□ -0.53
MTHFD1-202ENST00000545908 KTN1Q86UP2 1357 aaKnown RBP11.72□□□□□ -0.53
MTHFD1-202ENST00000545908 BICRAQ9NZM4 1560 aa11.72□□□□□ -0.53
MTHFD1-202ENST00000545908 FRAT1Q92837 279 aaPredicted RBP11.72□□□□□ -0.53
MTHFD1-202ENST00000545908 SYNJ2O15056 1496 aa11.71□□□□□ -0.53
MTHFD1-202ENST00000545908 CCDC144AA2RUR9 1427 aa11.71□□□□□ -0.53
MTHFD1-202ENST00000545908 TOP2BQ02880 1626 aa11.71□□□□□ -0.54
MTHFD1-202ENST00000545908 TIMELESSQ9UNS1 1208 aa11.71□□□□□ -0.54
MTHFD1-202ENST00000545908 NUTM2FA1L443 756 aa11.7□□□□□ -0.54
MTHFD1-202ENST00000545908 MEX3CQ5U5Q3 659 aaKnown RBP11.7□□□□□ -0.54
MTHFD1-202ENST00000545908 TERF2IPQ9NYB0 399 aa11.7□□□□□ -0.54
MTHFD1-202ENST00000545908 CHMP4BQ9H444 224 aaKnown RBP11.69□□□□□ -0.54
MTHFD1-202ENST00000545908 KIF21BO75037 1637 aa11.69□□□□□ -0.54
MTHFD1-202ENST00000545908 TRAK1Q9UPV9 953 aa11.68□□□□□ -0.54
MTHFD1-202ENST00000545908 MS4A1P11836 297 aa11.68□□□□□ -0.54
MTHFD1-202ENST00000545908 HECW1Q76N89 1606 aa11.67□□□□□ -0.54
MTHFD1-202ENST00000545908 ZNF330Q9Y3S2 320 aaPredicted RBP11.67□□□□□ -0.54
MTHFD1-202ENST00000545908 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.67□□□□□ -0.54
MTHFD1-202ENST00000545908 POLA1P09884 1462 aaPredicted RBP11.66□□□□□ -0.54
MTHFD1-202ENST00000545908 AMPHP49418 695 aa11.66□□□□□ -0.54
MTHFD1-202ENST00000545908 EVA1CP58658 441 aa11.65□□□□□ -0.54
MTHFD1-202ENST00000545908 VGFO15240 615 aaPredicted RBP11.65□□□□□ -0.54
MTHFD1-202ENST00000545908 MYOM3Q5VTT5 1437 aa11.65□□□□□ -0.54
MTHFD1-202ENST00000545908 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.64□□□□□ -0.55
MTHFD1-202ENST00000545908 TMX4Q9H1E5 349 aaPredicted RBP11.64□□□□□ -0.55
MTHFD1-202ENST00000545908 ERICH3Q5RHP9 1530 aa11.64□□□□□ -0.55
MTHFD1-202ENST00000545908 LTV1Q96GA3 475 aaPredicted RBP11.64□□□□□ -0.55
MTHFD1-202ENST00000545908 CALD1Q05682 793 aaKnown RBP11.63□□□□□ -0.55
MTHFD1-202ENST00000545908 U2AF1L5P0DN76 240 aaPredicted RBP11.63□□□□□ -0.55
MTHFD1-202ENST00000545908 U2AF1Q01081 240 aaKnown RBP eCLIP11.63□□□□□ -0.55
MTHFD1-202ENST00000545908 EFCAB5A4FU69 1503 aa11.62□□□□□ -0.55
MTHFD1-202ENST00000545908 CUL7Q14999 1698 aa11.62□□□□□ -0.55
MTHFD1-202ENST00000545908 FYCO1Q9BQS8 1478 aa11.62□□□□□ -0.55
MTHFD1-202ENST00000545908 CASKIN1Q8WXD9 1431 aa11.62□□□□□ -0.55
MTHFD1-202ENST00000545908 BECN1Q14457 450 aa11.61□□□□□ -0.55
MTHFD1-202ENST00000545908 L3MBTL2Q969R5 705 aa11.6□□□□□ -0.55
MTHFD1-202ENST00000545908 SUPT16HQ9Y5B9 1047 aaKnown RBP11.6□□□□□ -0.55
MTHFD1-202ENST00000545908 TAOK2Q9UL54 1235 aa11.6□□□□□ -0.55
MTHFD1-202ENST00000545908 RALBP1Q15311 655 aa11.6□□□□□ -0.55
MTHFD1-202ENST00000545908 EVC2Q86UK5 1308 aa11.59□□□□□ -0.55
MTHFD1-202ENST00000545908 NCLP19338 710 aaKnown RBP11.59□□□□□ -0.55
MTHFD1-202ENST00000545908 CDK11BP21127 795 aaKnown RBP11.59□□□□□ -0.55
MTHFD1-202ENST00000545908 KIF15Q9NS87 1388 aa11.59□□□□□ -0.55
MTHFD1-202ENST00000545908 EHBP1L1Q8N3D4 1523 aa11.59□□□□□ -0.55
MTHFD1-202ENST00000545908 DNAJC5BQ9UF47 199 aa11.59□□□□□ -0.55
MTHFD1-202ENST00000545908 ATF3P18847 181 aa11.58□□□□□ -0.55
MTHFD1-202ENST00000545908 LRRC9Q6ZRR7 1453 aa11.58□□□□□ -0.56
MTHFD1-202ENST00000545908 SUPT6HQ7KZ85 1726 aaKnown RBP11.58□□□□□ -0.56
MTHFD1-202ENST00000545908 MINK1Q8N4C8 1332 aaPredicted RBP11.58□□□□□ -0.56
MTHFD1-202ENST00000545908 NCOA2Q15596 1464 aa11.58□□□□□ -0.56
MTHFD1-202ENST00000545908 TULP1O00294 542 aaPredicted RBP11.58□□□□□ -0.56
MTHFD1-202ENST00000545908 DDRGK1Q96HY6 314 aa11.58□□□□□ -0.56
MTHFD1-202ENST00000545908 PSME1Q06323 249 aa11.57□□□□□ -0.56
MTHFD1-202ENST00000545908 KCNJ4P48050 445 aa11.57□□□□□ -0.56
MTHFD1-202ENST00000545908 FGD6Q6ZV73 1430 aa11.57□□□□□ -0.56
MTHFD1-202ENST00000545908 ZNF644Q9H582 1327 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms