RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 B4GALNT3Q6L9W6 998 aa20.76■□□□□ 0.91
USP28-214ENST00000545540 CFDP1Q9UEE9 299 aaPredicted RBP20.76■□□□□ 0.91
USP28-214ENST00000545540 KDM2AQ9Y2K7 1162 aa20.75■□□□□ 0.91
USP28-214ENST00000545540 KIF7Q2M1P5 1343 aa20.73■□□□□ 0.91
USP28-214ENST00000545540 CCDC7Q96M83 1385 aa20.72■□□□□ 0.91
USP28-214ENST00000545540 PRG4Q92954 1404 aaPredicted RBP20.72■□□□□ 0.91
USP28-214ENST00000545540 IQGAP2Q13576 1575 aa20.72■□□□□ 0.91
USP28-214ENST00000545540 TARBP1Q13395 1621 aaKnown RBP20.71■□□□□ 0.91
USP28-214ENST00000545540 CHMP7Q8WUX9 453 aaPredicted RBP20.7■□□□□ 0.9
USP28-214ENST00000545540 ABCC5O15440 1437 aa20.69■□□□□ 0.9
USP28-214ENST00000545540 MSH5O43196 834 aa20.69■□□□□ 0.9
USP28-214ENST00000545540 PKD2Q13563 968 aa20.69■□□□□ 0.9
USP28-214ENST00000545540 ARHGEF11O15085 1522 aa20.69■□□□□ 0.9
USP28-214ENST00000545540 ANKRD30BQ9BXX2 1392 aa20.69■□□□□ 0.9
USP28-214ENST00000545540 DAPK1P53355 1430 aa20.68■□□□□ 0.9
USP28-214ENST00000545540 CNTLNQ9NXG0 1405 aa20.67■□□□□ 0.9
USP28-214ENST00000545540 HECW1Q76N89 1606 aa20.66■□□□□ 0.9
USP28-214ENST00000545540 SALL2Q9Y467 1007 aaPredicted RBP20.66■□□□□ 0.9
USP28-214ENST00000545540 CDK11AQ9UQ88 783 aaPredicted RBP20.66■□□□□ 0.9
USP28-214ENST00000545540 TCOF1Q13428 1488 aaKnown RBP20.66■□□□□ 0.9
USP28-214ENST00000545540 WDR62O43379 1518 aa20.62■□□□□ 0.89
USP28-214ENST00000545540 MIA2Q96PC5 1412 aa20.61■□□□□ 0.89
USP28-214ENST00000545540 PLB1Q6P1J6 1458 aa20.61■□□□□ 0.89
USP28-214ENST00000545540 NUP153P49790 1475 aaKnown RBP20.61■□□□□ 0.89
USP28-214ENST00000545540 NCOA1Q15788 1441 aa20.6■□□□□ 0.89
USP28-214ENST00000545540 PBRM1Q86U86 1689 aa20.59■□□□□ 0.89
USP28-214ENST00000545540 ADAMTS12P58397 1594 aa20.57■□□□□ 0.88
USP28-214ENST00000545540 DISP1Q96F81 1524 aa20.57■□□□□ 0.88
USP28-214ENST00000545540 HNRNPMP52272 730 aaKnown RBP eCLIP20.57■□□□□ 0.88
USP28-214ENST00000545540 RPRD2Q5VT52 1461 aaKnown RBP20.57■□□□□ 0.88
USP28-214ENST00000545540 RGL3Q3MIN7 710 aa20.55■□□□□ 0.88
USP28-214ENST00000545540 GCC2Q8IWJ2 1684 aa20.55■□□□□ 0.88
USP28-214ENST00000545540 JPH4Q96JJ6 628 aa20.55■□□□□ 0.88
USP28-214ENST00000545540 MRC2Q9UBG0 1479 aa20.54■□□□□ 0.88
USP28-214ENST00000545540 PPP4R2Q9NY27 417 aa20.53■□□□□ 0.88
USP28-214ENST00000545540 DCAF11Q8TEB1 546 aa20.53■□□□□ 0.88
USP28-214ENST00000545540 CARD11Q9BXL7 1154 aa20.53■□□□□ 0.88
USP28-214ENST00000545540 TEX14Q8IWB6 1497 aa20.52■□□□□ 0.88
USP28-214ENST00000545540 USP47Q96K76 1375 aa20.52■□□□□ 0.88
USP28-214ENST00000545540 AKNAQ7Z591 1439 aa20.52■□□□□ 0.88
USP28-214ENST00000545540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.52■□□□□ 0.87
USP28-214ENST00000545540 NUP155O75694 1391 aa20.51■□□□□ 0.87
USP28-214ENST00000545540 ST20-MTHFSA0A0A6YYL1 179 aa20.5■□□□□ 0.87
USP28-214ENST00000545540 PLEKHD1A6NEE1 506 aa20.49■□□□□ 0.87
USP28-214ENST00000545540 KIAA0586Q9BVV6 1533 aa20.49■□□□□ 0.87
USP28-214ENST00000545540 ZBED9Q6R2W3 1325 aa20.49■□□□□ 0.87
USP28-214ENST00000545540 TMC1Q8TDI8 760 aa20.48■□□□□ 0.87
USP28-214ENST00000545540 PZPP20742 1482 aa20.48■□□□□ 0.87
USP28-214ENST00000545540 SPATA31E1Q6ZUB1 1445 aa20.48■□□□□ 0.87
USP28-214ENST00000545540 ROCK1Q13464 1354 aa20.48■□□□□ 0.87
USP28-214ENST00000545540 CAMSAP2Q08AD1 1489 aa20.48■□□□□ 0.87
USP28-214ENST00000545540 ERICH6Q7L0X2 663 aa20.47■□□□□ 0.87
USP28-214ENST00000545540 KIAA0556O60303 1618 aa20.46■□□□□ 0.87
USP28-214ENST00000545540 GRIN2AQ12879 1464 aa20.45■□□□□ 0.86
USP28-214ENST00000545540 GPATCH8Q9UKJ3 1502 aaKnown RBP20.45■□□□□ 0.86
USP28-214ENST00000545540 TSPY4P0CV99 314 aa20.44■□□□□ 0.86
USP28-214ENST00000545540 TSPY10P0CW01 314 aa20.44■□□□□ 0.86
USP28-214ENST00000545540 TROQ12816 1431 aaPredicted RBP20.44■□□□□ 0.86
USP28-214ENST00000545540 ERCC6Q03468 1493 aa20.43■□□□□ 0.86
USP28-214ENST00000545540 KIF14Q15058 1648 aa20.43■□□□□ 0.86
USP28-214ENST00000545540 DNMT1P26358 1616 aaKnown RBP20.42■□□□□ 0.86
USP28-214ENST00000545540 ANKRD50Q9ULJ7 1429 aa20.42■□□□□ 0.86
USP28-214ENST00000545540 DHX29Q7Z478 1369 aaKnown RBP20.41■□□□□ 0.86
USP28-214ENST00000545540 RAPGEF6Q8TEU7 1601 aa20.41■□□□□ 0.86
USP28-214ENST00000545540 IFT140Q96RY7 1462 aa20.41■□□□□ 0.86
USP28-214ENST00000545540 ANKRD30AQ9BXX3 1397 aa20.4■□□□□ 0.86
USP28-214ENST00000545540 KIAA1107Q9UPP5 1409 aa20.4■□□□□ 0.86
USP28-214ENST00000545540 NBPF1Q3BBV0 1214 aa20.39■□□□□ 0.85
USP28-214ENST00000545540 CCDC136Q96JN2 1154 aa20.38■□□□□ 0.85
USP28-214ENST00000545540 PNISRQ8TF01 805 aaKnown RBP20.36■□□□□ 0.85
USP28-214ENST00000545540 BCORL1Q5H9F3 1711 aa20.36■□□□□ 0.85
USP28-214ENST00000545540 CC2D1BQ5T0F9 858 aaKnown RBP20.34■□□□□ 0.85
USP28-214ENST00000545540 NUDCQ9Y266 331 aa20.34■□□□□ 0.85
USP28-214ENST00000545540 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
USP28-214ENST00000545540 NBR1Q14596 966 aa20.32■□□□□ 0.84
USP28-214ENST00000545540 CEP170Q5SW79 1584 aa20.31■□□□□ 0.84
USP28-214ENST00000545540 C9orf84Q5VXU9 1444 aa20.3■□□□□ 0.84
USP28-214ENST00000545540 KIF15Q9NS87 1388 aa20.3■□□□□ 0.84
USP28-214ENST00000545540 FANCIQ9NVI1 1328 aa20.29■□□□□ 0.84
USP28-214ENST00000545540 ROCK2O75116 1388 aaKnown RBP20.29■□□□□ 0.84
USP28-214ENST00000545540 PAK3O75914 559 aaPredicted RBP20.28■□□□□ 0.84
USP28-214ENST00000545540 CARMIL2Q6F5E8 1435 aa20.28■□□□□ 0.84
USP28-214ENST00000545540 SKAP1Q86WV1 359 aa20.27■□□□□ 0.84
USP28-214ENST00000545540 CDCA7LQ96GN5 454 aa20.27■□□□□ 0.84
USP28-214ENST00000545540 BCL11AQ9H165 835 aa20.27■□□□□ 0.83
USP28-214ENST00000545540 ATP10BO94823 1461 aa20.26■□□□□ 0.83
USP28-214ENST00000545540 NPM2Q86SE8 214 aaKnown RBP20.25■□□□□ 0.83
USP28-214ENST00000545540 PLIN1O60240 522 aa20.25■□□□□ 0.83
USP28-214ENST00000545540 EXOC6Q8TAG9 804 aa20.24■□□□□ 0.83
USP28-214ENST00000545540 ERICH6BQ5W0A0 696 aa20.23■□□□□ 0.83
USP28-214ENST00000545540 MBD5Q9P267 1494 aa20.22■□□□□ 0.83
USP28-214ENST00000545540 SYNJ2O15056 1496 aa20.22■□□□□ 0.83
USP28-214ENST00000545540 MAGI1Q96QZ7 1491 aaPredicted RBP20.21■□□□□ 0.83
USP28-214ENST00000545540 SMG6Q86US8 1419 aaKnown RBP20.21■□□□□ 0.83
USP28-214ENST00000545540 PTPRGP23470 1445 aa20.17■□□□□ 0.82
USP28-214ENST00000545540 MYBBP1AQ9BQG0 1328 aaKnown RBP20.17■□□□□ 0.82
USP28-214ENST00000545540 KDM5CP41229 1560 aa20.17■□□□□ 0.82
USP28-214ENST00000545540 PANK3Q9H999 370 aa20.17■□□□□ 0.82
USP28-214ENST00000545540 ADGRL2O95490 1459 aa20.15■□□□□ 0.82
USP28-214ENST00000545540 RCAN3Q9UKA8 241 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms