RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NAIPQ13075 1403 aa21.07■□□□□ 0.96
VPS33A-209ENST00000544349 ABCC5O15440 1437 aa21.05■□□□□ 0.96
VPS33A-209ENST00000544349 CHIC2Q9UKJ5 165 aa21.05■□□□□ 0.96
VPS33A-209ENST00000544349 AKNAQ7Z591 1439 aa21.05■□□□□ 0.96
VPS33A-209ENST00000544349 ZNF777Q9ULD5 760 aaPredicted RBP21.04■□□□□ 0.96
VPS33A-209ENST00000544349 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.02■□□□□ 0.96
VPS33A-209ENST00000544349 GCC2Q8IWJ2 1684 aa21.02■□□□□ 0.96
VPS33A-209ENST00000544349 RRP7BPQ9NSQ0 103 aa21.01■□□□□ 0.95
VPS33A-209ENST00000544349 PREX2Q70Z35 1606 aa21.01■□□□□ 0.95
VPS33A-209ENST00000544349 CDC42BPBQ9Y5S2 1711 aa21.01■□□□□ 0.95
VPS33A-209ENST00000544349 TTC37Q6PGP7 1564 aa21■□□□□ 0.95
VPS33A-209ENST00000544349 ROCK1Q13464 1354 aa21■□□□□ 0.95
VPS33A-209ENST00000544349 ZNF316A6NFI3 1004 aaPredicted RBP20.98■□□□□ 0.95
VPS33A-209ENST00000544349 KCNH8Q96L42 1107 aa20.98■□□□□ 0.95
VPS33A-209ENST00000544349 MAPKBP1O60336 1514 aa20.97■□□□□ 0.95
VPS33A-209ENST00000544349 CROCC2H7BZ55 1655 aa20.95■□□□□ 0.94
VPS33A-209ENST00000544349 SCAF1Q9H7N4 1312 aaKnown RBP20.95■□□□□ 0.94
VPS33A-209ENST00000544349 MYO5CQ9NQX4 1742 aa20.95■□□□□ 0.94
VPS33A-209ENST00000544349 SAMD9LQ8IVG5 1584 aa20.93■□□□□ 0.94
VPS33A-209ENST00000544349 ADGBQ8N7X0 1667 aa20.92■□□□□ 0.94
VPS33A-209ENST00000544349 WDR7Q9Y4E6 1490 aa20.92■□□□□ 0.94
VPS33A-209ENST00000544349 ARHGAP5Q13017 1502 aa20.91■□□□□ 0.94
VPS33A-209ENST00000544349 KDM6BO15054 1643 aa20.91■□□□□ 0.94
VPS33A-209ENST00000544349 ADGRL2O95490 1459 aa20.91■□□□□ 0.94
VPS33A-209ENST00000544349 ARHGEF5Q12774 1597 aa20.91■□□□□ 0.94
VPS33A-209ENST00000544349 PLCH2O75038 1416 aa20.89■□□□□ 0.94
VPS33A-209ENST00000544349 MBD5Q9P267 1494 aa20.89■□□□□ 0.93
VPS33A-209ENST00000544349 NCOA1Q15788 1441 aa20.89■□□□□ 0.93
VPS33A-209ENST00000544349 HNRNPMP52272 730 aaKnown RBP eCLIP20.89■□□□□ 0.93
VPS33A-209ENST00000544349 SHANK2Q9UPX8 1470 aa20.89■□□□□ 0.93
VPS33A-209ENST00000544349 ASXL2Q76L83 1435 aa20.87■□□□□ 0.93
VPS33A-209ENST00000544349 NPM1P06748 294 aaKnown RBP eCLIP20.86■□□□□ 0.93
VPS33A-209ENST00000544349 RSPH4AQ5TD94 716 aa20.86■□□□□ 0.93
VPS33A-209ENST00000544349 ANKRD30AQ9BXX3 1397 aa20.85■□□□□ 0.93
VPS33A-209ENST00000544349 ACIN1Q9UKV3 1341 aaKnown RBP20.85■□□□□ 0.93
VPS33A-209ENST00000544349 C9orf84Q5VXU9 1444 aa20.85■□□□□ 0.93
VPS33A-209ENST00000544349 TSPY4P0CV99 314 aa20.84■□□□□ 0.93
VPS33A-209ENST00000544349 TSPY10P0CW01 314 aa20.84■□□□□ 0.93
VPS33A-209ENST00000544349 CCDC141Q6ZP82 1450 aa20.84■□□□□ 0.93
VPS33A-209ENST00000544349 PLEKHH2Q8IVE3 1493 aa20.83■□□□□ 0.93
VPS33A-209ENST00000544349 SYCP2Q9BX26 1530 aa20.83■□□□□ 0.92
VPS33A-209ENST00000544349 KIAA1107Q9UPP5 1409 aa20.82■□□□□ 0.92
VPS33A-209ENST00000544349 EFCAB2Q5VUJ9 269 aa20.82■□□□□ 0.92
VPS33A-209ENST00000544349 ARAP3Q8WWN8 1544 aa20.82■□□□□ 0.92
VPS33A-209ENST00000544349 TRIM52Q96A61 297 aa20.81■□□□□ 0.92
VPS33A-209ENST00000544349 ABCA9Q8IUA7 1624 aa20.81■□□□□ 0.92
VPS33A-209ENST00000544349 NEUROD1Q13562 356 aa20.8■□□□□ 0.92
VPS33A-209ENST00000544349 RIMBP3CA6NJZ7 1639 aa20.78■□□□□ 0.92
VPS33A-209ENST00000544349 RIMBP3BA6NNM3 1639 aa20.78■□□□□ 0.92
VPS33A-209ENST00000544349 RIMBP3Q9UFD9 1639 aa20.78■□□□□ 0.92
VPS33A-209ENST00000544349 SIN3AQ96ST3 1273 aa20.78■□□□□ 0.92
VPS33A-209ENST00000544349 ARHGEF12Q9NZN5 1544 aa20.77■□□□□ 0.92
VPS33A-209ENST00000544349 MAST1Q9Y2H9 1570 aa20.76■□□□□ 0.91
VPS33A-209ENST00000544349 DENND4BO75064 1496 aaPredicted RBP20.76■□□□□ 0.91
VPS33A-209ENST00000544349 ABCC1P33527 1531 aa20.75■□□□□ 0.91
VPS33A-209ENST00000544349 ANKRD50Q9ULJ7 1429 aa20.75■□□□□ 0.91
VPS33A-209ENST00000544349 MPHOSPH9Q99550 1183 aa20.74■□□□□ 0.91
VPS33A-209ENST00000544349 CYB5RLQ6IPT4 315 aa20.73■□□□□ 0.91
VPS33A-209ENST00000544349 KIF15Q9NS87 1388 aa20.72■□□□□ 0.91
VPS33A-209ENST00000544349 TIMELESSQ9UNS1 1208 aa20.71■□□□□ 0.91
VPS33A-209ENST00000544349 FANCAO15360 1455 aa20.7■□□□□ 0.9
VPS33A-209ENST00000544349 MIER1Q8N108 512 aa20.68■□□□□ 0.9
VPS33A-209ENST00000544349 TRAPPC8Q9Y2L5 1435 aa20.68■□□□□ 0.9
VPS33A-209ENST00000544349 PLXNC1O60486 1568 aa20.67■□□□□ 0.9
VPS33A-209ENST00000544349 PZPP20742 1482 aa20.66■□□□□ 0.9
VPS33A-209ENST00000544349 SLC4A1APQ9BWU0 796 aaKnown RBP20.66■□□□□ 0.9
VPS33A-209ENST00000544349 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
VPS33A-209ENST00000544349 CD109Q6YHK3 1445 aa20.63■□□□□ 0.89
VPS33A-209ENST00000544349 ADGRL1O94910 1474 aa20.62■□□□□ 0.89
VPS33A-209ENST00000544349 FOXD1Q16676 465 aa20.61■□□□□ 0.89
VPS33A-209ENST00000544349 AFAP1Q8N556 730 aa20.61■□□□□ 0.89
VPS33A-209ENST00000544349 KDM5DQ9BY66 1539 aa20.61■□□□□ 0.89
VPS33A-209ENST00000544349 RTEL1-TNFRSF6BF6WH68 1400 aa20.6■□□□□ 0.89
VPS33A-209ENST00000544349 TONSLQ96HA7 1378 aa20.6■□□□□ 0.89
VPS33A-209ENST00000544349 SCAPERQ9BY12 1400 aa20.6■□□□□ 0.89
VPS33A-209ENST00000544349 ANKRD30BQ9BXX2 1392 aa20.6■□□□□ 0.89
VPS33A-209ENST00000544349 DUOX2Q9NRD8 1548 aa20.59■□□□□ 0.89
VPS33A-209ENST00000544349 NUP155O75694 1391 aa20.59■□□□□ 0.89
VPS33A-209ENST00000544349 SPAG9O60271 1321 aaKnown RBP20.59■□□□□ 0.89
VPS33A-209ENST00000544349 YTHDC1Q96MU7 727 aaKnown RBP20.59■□□□□ 0.89
VPS33A-209ENST00000544349 CFAP74Q9C0B2 1584 aa20.57■□□□□ 0.88
VPS33A-209ENST00000544349 PPP1R15AO75807 674 aaPredicted RBP20.57■□□□□ 0.88
VPS33A-209ENST00000544349 ZFYVE16Q7Z3T8 1539 aa20.56■□□□□ 0.88
VPS33A-209ENST00000544349 ERBINQ96RT1 1412 aa20.54■□□□□ 0.88
VPS33A-209ENST00000544349 PKD2Q13563 968 aa20.54■□□□□ 0.88
VPS33A-209ENST00000544349 UNC13BO14795 1591 aa20.54■□□□□ 0.88
VPS33A-209ENST00000544349 INO80Q9ULG1 1556 aaPredicted RBP20.54■□□□□ 0.88
VPS33A-209ENST00000544349 GTF3C3Q9Y5Q9 886 aa20.53■□□□□ 0.88
VPS33A-209ENST00000544349 ATP7AQ04656 1500 aa20.52■□□□□ 0.88
VPS33A-209ENST00000544349 GLI2P10070 1586 aa20.52■□□□□ 0.88
VPS33A-209ENST00000544349 MAP3K4Q9Y6R4 1608 aa20.52■□□□□ 0.87
VPS33A-209ENST00000544349 RPRD2Q5VT52 1461 aaKnown RBP20.51■□□□□ 0.87
VPS33A-209ENST00000544349 FAM135AQ9P2D6 1515 aa20.5■□□□□ 0.87
VPS33A-209ENST00000544349 ZNF518AQ6AHZ1 1483 aa20.49■□□□□ 0.87
VPS33A-209ENST00000544349 NEO1Q92859 1461 aa20.49■□□□□ 0.87
VPS33A-209ENST00000544349 MAGI2Q86UL8 1455 aa20.47■□□□□ 0.87
VPS33A-209ENST00000544349 IQGAP3Q86VI3 1631 aa20.45■□□□□ 0.87
VPS33A-209ENST00000544349 KIDINS220Q9ULH0 1771 aa20.45■□□□□ 0.86
VPS33A-209ENST00000544349 POGZQ7Z3K3 1410 aa20.45■□□□□ 0.86
VPS33A-209ENST00000544349 DIP2BQ9P265 1576 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms