RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 DDX10Q13206 875 aaKnown RBP25.69■■□□□ 1.7
VIM-209ENST00000544301 KDM5BQ9UGL1 1544 aa25.68■■□□□ 1.7
VIM-209ENST00000544301 ZNF644Q9H582 1327 aaPredicted RBP25.67■■□□□ 1.7
VIM-209ENST00000544301 HIRIP3Q9BW71 556 aaPredicted RBP25.65■■□□□ 1.7
VIM-209ENST00000544301 MPHOSPH9Q99550 1183 aa25.63■■□□□ 1.69
VIM-209ENST00000544301 ADCY10Q96PN6 1610 aa25.61■■□□□ 1.69
VIM-209ENST00000544301 ITSN2Q9NZM3 1697 aa25.59■■□□□ 1.69
VIM-209ENST00000544301 KIF14Q15058 1648 aa25.59■■□□□ 1.69
VIM-209ENST00000544301 GPATCH8Q9UKJ3 1502 aaKnown RBP25.58■■□□□ 1.69
VIM-209ENST00000544301 CAMSAP2Q08AD1 1489 aa25.58■■□□□ 1.69
VIM-209ENST00000544301 CFDP1Q9UEE9 299 aaPredicted RBP25.57■■□□□ 1.68
VIM-209ENST00000544301 ABCA8O94911 1581 aa25.56■■□□□ 1.68
VIM-209ENST00000544301 KCNH8Q96L42 1107 aa25.56■■□□□ 1.68
VIM-209ENST00000544301 PELP1Q8IZL8 1130 aaKnown RBP25.55■■□□□ 1.68
VIM-209ENST00000544301 FOXD1Q16676 465 aa25.5■■□□□ 1.67
VIM-209ENST00000544301 ATP10BO94823 1461 aa25.49■■□□□ 1.67
VIM-209ENST00000544301 ANKRD30BQ9BXX2 1392 aa25.48■■□□□ 1.67
VIM-209ENST00000544301 ADGBQ8N7X0 1667 aa25.48■■□□□ 1.67
VIM-209ENST00000544301 NCOA1Q15788 1441 aa25.47■■□□□ 1.67
VIM-209ENST00000544301 PLEKHD1A6NEE1 506 aa25.46■■□□□ 1.67
VIM-209ENST00000544301 CROCC2H7BZ55 1655 aa25.46■■□□□ 1.67
VIM-209ENST00000544301 ZNF777Q9ULD5 760 aaPredicted RBP25.45■■□□□ 1.66
VIM-209ENST00000544301 ADGRL2O95490 1459 aa25.45■■□□□ 1.66
VIM-209ENST00000544301 ABCC10Q5T3U5 1492 aa25.43■■□□□ 1.66
VIM-209ENST00000544301 L3MBTL2Q969R5 705 aa25.43■■□□□ 1.66
VIM-209ENST00000544301 RPRD2Q5VT52 1461 aaKnown RBP25.43■■□□□ 1.66
VIM-209ENST00000544301 ANP32CO43423 234 aa25.42■■□□□ 1.66
VIM-209ENST00000544301 SLC4A1APQ9BWU0 796 aaKnown RBP25.42■■□□□ 1.66
VIM-209ENST00000544301 CDC42BPAQ5VT25 1732 aa25.42■■□□□ 1.66
VIM-209ENST00000544301 CCER2I3L3R5 266 aa25.41■■□□□ 1.66
VIM-209ENST00000544301 PZPP20742 1482 aa25.4■■□□□ 1.66
VIM-209ENST00000544301 HSPA5P11021 654 aaKnown RBP25.39■■□□□ 1.65
VIM-209ENST00000544301 PTPRGP23470 1445 aa25.38■■□□□ 1.65
VIM-209ENST00000544301 ANKRD30AQ9BXX3 1397 aa25.37■■□□□ 1.65
VIM-209ENST00000544301 TEX14Q8IWB6 1497 aa25.36■■□□□ 1.65
VIM-209ENST00000544301 CHD1O14646 1710 aa25.35■■□□□ 1.65
VIM-209ENST00000544301 EIF4G2P78344 907 aaKnown RBP eCLIP25.34■■□□□ 1.65
VIM-209ENST00000544301 SHANK2Q9UPX8 1470 aa25.32■■□□□ 1.64
VIM-209ENST00000544301 WASHC2AQ641Q2 1341 aa25.31■■□□□ 1.64
VIM-209ENST00000544301 C9orf84Q5VXU9 1444 aa25.29■■□□□ 1.64
VIM-209ENST00000544301 ANKRD50Q9ULJ7 1429 aa25.29■■□□□ 1.64
VIM-209ENST00000544301 NBPF8Q3BBV2 869 aa25.28■■□□□ 1.64
VIM-209ENST00000544301 KIAA1107Q9UPP5 1409 aa25.27■■□□□ 1.64
VIM-209ENST00000544301 SHROOM2Q13796 1616 aa25.27■■□□□ 1.64
VIM-209ENST00000544301 SUPT16HQ9Y5B9 1047 aaKnown RBP25.25■■□□□ 1.63
VIM-209ENST00000544301 ARHGEF5Q12774 1597 aa25.23■■□□□ 1.63
VIM-209ENST00000544301 PKD2Q13563 968 aa25.22■■□□□ 1.63
VIM-209ENST00000544301 TSPY4P0CV99 314 aa25.21■■□□□ 1.63
VIM-209ENST00000544301 TSPY10P0CW01 314 aa25.21■■□□□ 1.63
VIM-209ENST00000544301 MBD5Q9P267 1494 aa25.2■■□□□ 1.62
VIM-209ENST00000544301 HNRNPMP52272 730 aaKnown RBP eCLIP25.19■■□□□ 1.62
VIM-209ENST00000544301 PREX2Q70Z35 1606 aa25.19■■□□□ 1.62
VIM-209ENST00000544301 CDC42BPBQ9Y5S2 1711 aa25.19■■□□□ 1.62
VIM-209ENST00000544301 SAMD9LQ8IVG5 1584 aa25.17■■□□□ 1.62
VIM-209ENST00000544301 SPATA31E1Q6ZUB1 1445 aa25.17■■□□□ 1.62
VIM-209ENST00000544301 C11orf95C9JLR9 678 aaPredicted RBP25.16■■□□□ 1.62
VIM-209ENST00000544301 NUP155O75694 1391 aa25.16■■□□□ 1.62
VIM-209ENST00000544301 CCDC7Q96M83 1385 aa25.16■■□□□ 1.62
VIM-209ENST00000544301 KDM5DQ9BY66 1539 aa25.16■■□□□ 1.62
VIM-209ENST00000544301 CNTLNQ9NXG0 1405 aa25.15■■□□□ 1.62
VIM-209ENST00000544301 KIF15Q9NS87 1388 aa25.15■■□□□ 1.62
VIM-209ENST00000544301 ERCC6L2Q5T890 1561 aa25.14■■□□□ 1.62
VIM-209ENST00000544301 CCDC141Q6ZP82 1450 aa25.13■■□□□ 1.61
VIM-209ENST00000544301 ABCC2Q92887 1545 aa25.11■■□□□ 1.61
VIM-209ENST00000544301 RSPH4AQ5TD94 716 aa25.09■■□□□ 1.61
VIM-209ENST00000544301 TTC37Q6PGP7 1564 aa25.09■■□□□ 1.61
VIM-209ENST00000544301 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.08■■□□□ 1.614e-7■■□□□ 11.4
VIM-209ENST00000544301 POLR1AO95602 1720 aaPredicted RBP25.07■■□□□ 1.6
VIM-209ENST00000544301 ARHGAP5Q13017 1502 aa25.05■■□□□ 1.6
VIM-209ENST00000544301 SYCP2Q9BX26 1530 aa25.04■■□□□ 1.6
VIM-209ENST00000544301 KIF7Q2M1P5 1343 aa25.04■■□□□ 1.6
VIM-209ENST00000544301 MAST1Q9Y2H9 1570 aa25.02■■□□□ 1.6
VIM-209ENST00000544301 UHRF1BP1Q6BDS2 1440 aa25.02■■□□□ 1.6
VIM-209ENST00000544301 CLASP1Q7Z460 1538 aa25.01■■□□□ 1.59
VIM-209ENST00000544301 MYO5CQ9NQX4 1742 aa25■■□□□ 1.59
VIM-209ENST00000544301 ARHGEF12Q9NZN5 1544 aa25■■□□□ 1.59
VIM-209ENST00000544301 ZNF326Q5BKZ1 582 aaKnown RBP24.99■■□□□ 1.59
VIM-209ENST00000544301 USP47Q96K76 1375 aa24.98■■□□□ 1.59
VIM-209ENST00000544301 FAM135AQ9P2D6 1515 aa24.98■■□□□ 1.59
VIM-209ENST00000544301 PRKRIP1Q9H875 184 aaPredicted RBP24.97■■□□□ 1.59
VIM-209ENST00000544301 PLEKHH2Q8IVE3 1493 aa24.96■■□□□ 1.59
VIM-209ENST00000544301 KDM5CP41229 1560 aa24.96■■□□□ 1.59
VIM-209ENST00000544301 RALGAPBQ86X10 1494 aa24.95■■□□□ 1.58
VIM-209ENST00000544301 UHRF1BP1LA0JNW5 1464 aa24.94■■□□□ 1.58
VIM-209ENST00000544301 ZCCHC11Q5TAX3 1644 aaKnown RBP24.94■■□□□ 1.58
VIM-209ENST00000544301 BCORL1Q5H9F3 1711 aa24.93■■□□□ 1.58
VIM-209ENST00000544301 FKBP8Q14318 412 aa24.93■■□□□ 1.58
VIM-209ENST00000544301 HNRNPUQ00839 825 aaKnown RBP eCLIP24.92■■□□□ 1.58
VIM-209ENST00000544301 UNC13BO14795 1591 aa24.92■■□□□ 1.58
VIM-209ENST00000544301 PLXNC1O60486 1568 aa24.92■■□□□ 1.58
VIM-209ENST00000544301 CCDC184Q52MB2 194 aa24.91■■□□□ 1.58
VIM-209ENST00000544301 PLCH2O75038 1416 aa24.89■■□□□ 1.58
VIM-209ENST00000544301 ARID4BQ4LE39 1312 aaPredicted RBP24.87■■□□□ 1.57
VIM-209ENST00000544301 NEFLP07196 543 aa24.86■■□□□ 1.57
VIM-209ENST00000544301 KDM2AQ9Y2K7 1162 aa24.86■■□□□ 1.57
VIM-209ENST00000544301 DCAF11Q8TEB1 546 aa24.85■■□□□ 1.57
VIM-209ENST00000544301 CARD11Q9BXL7 1154 aa24.85■■□□□ 1.57
VIM-209ENST00000544301 DUOX2Q9NRD8 1548 aa24.84■■□□□ 1.57
VIM-209ENST00000544301 EFCAB2Q5VUJ9 269 aa24.83■■□□□ 1.57
VIM-209ENST00000544301 DHX29Q7Z478 1369 aaKnown RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms