RNA–Protein interactions for RNA: ENST00000544293.1

C2CD3-220, Transcript of C2 calcium dependent domain containing 3, humanhuman

TSL 2

Gene C2CD3, Length 731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2CD3-220ENST00000544293 ZFYVE16Q7Z3T8 1539 aa16.02■□□□□ 0.15
C2CD3-220ENST00000544293 HECW1Q76N89 1606 aa16.01■□□□□ 0.15
C2CD3-220ENST00000544293 ILDR2Q71H61 639 aa16.01■□□□□ 0.15
C2CD3-220ENST00000544293 AFAP1Q8N556 730 aa16■□□□□ 0.15
C2CD3-220ENST00000544293 CDK13Q14004 1512 aaKnown RBP15.99■□□□□ 0.15
C2CD3-220ENST00000544293 ATP10AO60312 1499 aa15.99■□□□□ 0.15
C2CD3-220ENST00000544293 EFCAB2Q5VUJ9 269 aa15.98■□□□□ 0.15
C2CD3-220ENST00000544293 ARHGEF12Q9NZN5 1544 aa15.98■□□□□ 0.15
C2CD3-220ENST00000544293 EEA1Q15075 1411 aa15.97■□□□□ 0.15
C2CD3-220ENST00000544293 EFCAB5A4FU69 1503 aa15.97■□□□□ 0.15
C2CD3-220ENST00000544293 C9orf84Q5VXU9 1444 aa15.94■□□□□ 0.14
C2CD3-220ENST00000544293 ATP1B4Q9UN42 357 aaPredicted RBP15.91■□□□□ 0.14
C2CD3-220ENST00000544293 CFAP74Q9C0B2 1584 aa15.91■□□□□ 0.14
C2CD3-220ENST00000544293 EHMT2Q96KQ7 1210 aa15.89■□□□□ 0.13
C2CD3-220ENST00000544293 DMRT2Q9Y5R5 561 aa15.89■□□□□ 0.13
C2CD3-220ENST00000544293 ARHGAP35Q9NRY4 1499 aa15.88■□□□□ 0.13
C2CD3-220ENST00000544293 SOCS7O14512 581 aa15.87■□□□□ 0.13
C2CD3-220ENST00000544293 DISP3Q9P2K9 1392 aa15.87■□□□□ 0.13
C2CD3-220ENST00000544293 CDK11AQ9UQ88 783 aaPredicted RBP15.86■□□□□ 0.13
C2CD3-220ENST00000544293 TROQ12816 1431 aaPredicted RBP15.85■□□□□ 0.13
C2CD3-220ENST00000544293 TRAPPC8Q9Y2L5 1435 aa15.85■□□□□ 0.13
C2CD3-220ENST00000544293 UBTFP17480 764 aaKnown RBP15.85■□□□□ 0.13
C2CD3-220ENST00000544293 PTPRTO14522 1441 aa15.85■□□□□ 0.13
C2CD3-220ENST00000544293 ZNF518AQ6AHZ1 1483 aa15.84■□□□□ 0.13
C2CD3-220ENST00000544293 STRCQ7RTU9 1775 aa15.84■□□□□ 0.13
C2CD3-220ENST00000544293 FMN1Q68DA7 1419 aa15.84■□□□□ 0.13
C2CD3-220ENST00000544293 UHRF1BP1Q6BDS2 1440 aa15.84■□□□□ 0.13
C2CD3-220ENST00000544293 KDM5CP41229 1560 aa15.83■□□□□ 0.13
C2CD3-220ENST00000544293 FER1L4A9Z1Z3 1794 aa15.83■□□□□ 0.12
C2CD3-220ENST00000544293 MLH3Q9UHC1 1453 aa15.83■□□□□ 0.12
C2CD3-220ENST00000544293 KIF14Q15058 1648 aa15.83■□□□□ 0.12
C2CD3-220ENST00000544293 LTBP4Q8N2S1 1624 aa15.8■□□□□ 0.12
C2CD3-220ENST00000544293 DIP2CQ9Y2E4 1556 aa15.8■□□□□ 0.12
C2CD3-220ENST00000544293 MYT1LQ9UL68 1186 aa15.79■□□□□ 0.12
C2CD3-220ENST00000544293 ARHGAP5Q13017 1502 aa15.78■□□□□ 0.12
C2CD3-220ENST00000544293 FOXD1Q16676 465 aa15.78■□□□□ 0.12
C2CD3-220ENST00000544293 PREX1Q8TCU6 1659 aa15.78■□□□□ 0.12
C2CD3-220ENST00000544293 AGLP35573 1532 aa15.78■□□□□ 0.12
C2CD3-220ENST00000544293 REREQ9P2R6 1566 aa15.77■□□□□ 0.11
C2CD3-220ENST00000544293 NCOA1Q15788 1441 aa15.77■□□□□ 0.11
C2CD3-220ENST00000544293 ABCA6Q8N139 1617 aa15.74■□□□□ 0.11
C2CD3-220ENST00000544293 ZMYM3Q14202 1370 aa15.74■□□□□ 0.11
C2CD3-220ENST00000544293 NCKAP5LQ9HCH0 1330 aa15.73■□□□□ 0.11
C2CD3-220ENST00000544293 SETD1BQ9UPS6 1966 aaKnown RBP15.73■□□□□ 0.11
C2CD3-220ENST00000544293 CLIP1P30622 1438 aa15.73■□□□□ 0.11
C2CD3-220ENST00000544293 MYO5CQ9NQX4 1742 aa15.72■□□□□ 0.11
C2CD3-220ENST00000544293 ZNF335Q9H4Z2 1342 aaPredicted RBP15.71■□□□□ 0.11
C2CD3-220ENST00000544293 HNRNPMP52272 730 aaKnown RBP eCLIP15.71■□□□□ 0.11
C2CD3-220ENST00000544293 ESF1Q9H501 851 aaKnown RBP15.71■□□□□ 0.11
C2CD3-220ENST00000544293 ABCC1P33527 1531 aa15.71■□□□□ 0.11
C2CD3-220ENST00000544293 C3P01024 1663 aa15.7■□□□□ 0.1
C2CD3-220ENST00000544293 CASKIN1Q8WXD9 1431 aa15.69■□□□□ 0.1
C2CD3-220ENST00000544293 CNTLNQ9NXG0 1405 aa15.69■□□□□ 0.1
C2CD3-220ENST00000544293 CDC42BPBQ9Y5S2 1711 aa15.68■□□□□ 0.1
C2CD3-220ENST00000544293 ZNF777Q9ULD5 760 aaPredicted RBP15.68■□□□□ 0.1
C2CD3-220ENST00000544293 NPATQ14207 1427 aa15.68■□□□□ 0.1
C2CD3-220ENST00000544293 IQSEC2Q5JU85 1478 aa15.67■□□□□ 0.1
C2CD3-220ENST00000544293 LRRIQ1Q96JM4 1722 aa15.66■□□□□ 0.1
C2CD3-220ENST00000544293 GPATCH8Q9UKJ3 1502 aaKnown RBP15.66■□□□□ 0.1
C2CD3-220ENST00000544293 KIDINS220Q9ULH0 1771 aa15.66■□□□□ 0.1
C2CD3-220ENST00000544293 SPAG9O60271 1321 aaKnown RBP15.66■□□□□ 0.1
C2CD3-220ENST00000544293 PTPRKQ15262 1439 aa15.64■□□□□ 0.09
C2CD3-220ENST00000544293 SAMD9LQ8IVG5 1584 aa15.64■□□□□ 0.09
C2CD3-220ENST00000544293 CAMSAP1Q5T5Y3 1602 aa15.64■□□□□ 0.09
C2CD3-220ENST00000544293 UBAP1LF5GYI3 381 aa15.63■□□□□ 0.09
C2CD3-220ENST00000544293 PKD2Q13563 968 aa15.63■□□□□ 0.09
C2CD3-220ENST00000544293 SPATA31D1Q6ZQQ2 1576 aa15.62■□□□□ 0.09
C2CD3-220ENST00000544293 PREX2Q70Z35 1606 aa15.62■□□□□ 0.09
C2CD3-220ENST00000544293 POTEDQ86YR6 584 aa15.62■□□□□ 0.09
C2CD3-220ENST00000544293 KIAA1107Q9UPP5 1409 aa15.61■□□□□ 0.09
C2CD3-220ENST00000544293 TCOF1Q13428 1488 aaKnown RBP15.61■□□□□ 0.09
C2CD3-220ENST00000544293 GGT6Q6P531 493 aa15.61■□□□□ 0.09
C2CD3-220ENST00000544293 CCDC18Q5T9S5 1454 aa15.6■□□□□ 0.09
C2CD3-220ENST00000544293 ZNF644Q9H582 1327 aaPredicted RBP15.6■□□□□ 0.09
C2CD3-220ENST00000544293 ITSN2Q9NZM3 1697 aa15.6■□□□□ 0.09
C2CD3-220ENST00000544293 CFDP1Q9UEE9 299 aaPredicted RBP15.59■□□□□ 0.09
C2CD3-220ENST00000544293 PLA2R1Q13018 1463 aa15.59■□□□□ 0.09
C2CD3-220ENST00000544293 A2MP01023 1474 aa15.58■□□□□ 0.08
C2CD3-220ENST00000544293 SYCP2Q9BX26 1530 aa15.58■□□□□ 0.08
C2CD3-220ENST00000544293 FBXO31Q5XUX0 539 aaPredicted RBP15.57■□□□□ 0.08
C2CD3-220ENST00000544293 PPP6R1Q9UPN7 881 aa15.57■□□□□ 0.08
C2CD3-220ENST00000544293 HSPA1LP34931 641 aa15.56■□□□□ 0.08
C2CD3-220ENST00000544293 PLXNC1O60486 1568 aa15.55■□□□□ 0.08
C2CD3-220ENST00000544293 MBD5Q9P267 1494 aa15.54■□□□□ 0.08
C2CD3-220ENST00000544293 CDC42BPAQ5VT25 1732 aa15.54■□□□□ 0.08
C2CD3-220ENST00000544293 ATP7AQ04656 1500 aa15.53■□□□□ 0.08
C2CD3-220ENST00000544293 FYCO1Q9BQS8 1478 aa15.52■□□□□ 0.07
C2CD3-220ENST00000544293 CCNB3Q8WWL7 1395 aa15.51■□□□□ 0.07
C2CD3-220ENST00000544293 MROH2AA6NES4 1674 aa15.51■□□□□ 0.07
C2CD3-220ENST00000544293 CEP170BQ9Y4F5 1589 aaPredicted RBP15.51■□□□□ 0.07
C2CD3-220ENST00000544293 DHX29Q7Z478 1369 aaKnown RBP15.5■□□□□ 0.07
C2CD3-220ENST00000544293 INO80Q9ULG1 1556 aaPredicted RBP15.49■□□□□ 0.07
C2CD3-220ENST00000544293 A2ML1A8K2U0 1454 aa15.49■□□□□ 0.07
C2CD3-220ENST00000544293 PLEKHH2Q8IVE3 1493 aa15.49■□□□□ 0.07
C2CD3-220ENST00000544293 PIP4K2BP78356 416 aa15.48■□□□□ 0.07
C2CD3-220ENST00000544293 SUPT6HQ7KZ85 1726 aaKnown RBP15.48■□□□□ 0.07
C2CD3-220ENST00000544293 CLTCQ00610 1675 aaKnown RBP15.48■□□□□ 0.07
C2CD3-220ENST00000544293 MYO3AQ8NEV4 1616 aa15.47■□□□□ 0.07
C2CD3-220ENST00000544293 RTEL1-TNFRSF6BF6WH68 1400 aa15.46■□□□□ 0.07
C2CD3-220ENST00000544293 KIF3BO15066 747 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms