RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PRDM16Q9HAZ2 1276 aa11.94□□□□□ -0.5
VPS13D-212ENST00000543766 HSP90AA1P07900 732 aaKnown RBP11.93□□□□□ -0.5
VPS13D-212ENST00000543766 E9PSI1 815 aa11.92□□□□□ -0.5
VPS13D-212ENST00000543766 TRHP20396 242 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-212ENST00000543766 PUS7Q96PZ0 661 aaKnown RBP11.91□□□□□ -0.5
VPS13D-212ENST00000543766 FOXD4L5Q5VV16 416 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-212ENST00000543766 FOXD4L4Q8WXT5 416 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-212ENST00000543766 ZBTB7CA1YPR0 619 aa11.88□□□□□ -0.51
VPS13D-212ENST00000543766 KDM4AO75164 1064 aa11.88□□□□□ -0.51
VPS13D-212ENST00000543766 RRP9O43818 475 aaKnown RBP11.88□□□□□ -0.51
VPS13D-212ENST00000543766 FKBP8Q14318 412 aa11.88□□□□□ -0.51
VPS13D-212ENST00000543766 CCDC88BA6NC98 1476 aa11.87□□□□□ -0.51
VPS13D-212ENST00000543766 NECTIN2Q92692 538 aa11.87□□□□□ -0.51
VPS13D-212ENST00000543766 ANAPC15P60006 121 aa11.86□□□□□ -0.51
VPS13D-212ENST00000543766 RNF216Q9NWF9 866 aaPredicted RBP11.86□□□□□ -0.51
VPS13D-212ENST00000543766 GPATCH11Q8N954 259 aa11.86□□□□□ -0.51
VPS13D-212ENST00000543766 ZNF692Q9BU19 519 aaPredicted RBP11.85□□□□□ -0.51
VPS13D-212ENST00000543766 HDAC5Q9UQL6 1122 aa11.85□□□□□ -0.51
VPS13D-212ENST00000543766 RAD21O60216 631 aa11.84□□□□□ -0.51
VPS13D-212ENST00000543766 FANCIQ9NVI1 1328 aa11.84□□□□□ -0.51
VPS13D-212ENST00000543766 IRX3P78415 501 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-212ENST00000543766 ZNF830Q96NB3 372 aaPredicted RBP11.83□□□□□ -0.52
VPS13D-212ENST00000543766 WDR97A6NE52 1622 aa11.83□□□□□ -0.52
VPS13D-212ENST00000543766 AEBP1Q8IUX7 1158 aa11.83□□□□□ -0.52
VPS13D-212ENST00000543766 MYCNP04198 464 aaPredicted RBP11.82□□□□□ -0.52
VPS13D-212ENST00000543766 ARID3CA6NKF2 412 aa11.81□□□□□ -0.52
VPS13D-212ENST00000543766 P3H3Q8IVL6 736 aa11.81□□□□□ -0.52
VPS13D-212ENST00000543766 MPNDQ8N594 471 aa11.81□□□□□ -0.52
VPS13D-212ENST00000543766 NEFMP07197 916 aa11.8□□□□□ -0.52
VPS13D-212ENST00000543766 DNTTIP2Q5QJE6 756 aaKnown RBP11.79□□□□□ -0.52
VPS13D-212ENST00000543766 CLGNO14967 610 aa11.78□□□□□ -0.52
VPS13D-212ENST00000543766 CDCA8Q53HL2 280 aa11.77□□□□□ -0.53
VPS13D-212ENST00000543766 ZHX1Q9UKY1 873 aaPredicted RBP11.77□□□□□ -0.53
VPS13D-212ENST00000543766 FOXD4L6Q3SYB3 417 aaPredicted RBP11.76□□□□□ -0.53
VPS13D-212ENST00000543766 FOXD4L3Q6VB84 417 aaPredicted RBP11.76□□□□□ -0.53
VPS13D-212ENST00000543766 ZBTB22O15209 634 aa11.76□□□□□ -0.53
VPS13D-212ENST00000543766 ITGAEP38570 1179 aa11.76□□□□□ -0.53
VPS13D-212ENST00000543766 KCTD17Q8N5Z5 321 aa11.74□□□□□ -0.53
VPS13D-212ENST00000543766 ANP32BQ92688 251 aaKnown RBP11.74□□□□□ -0.53
VPS13D-212ENST00000543766 PIAS4Q8N2W9 510 aaPredicted RBP11.74□□□□□ -0.53
VPS13D-212ENST00000543766 FAM177A1Q8N128 213 aaPredicted RBP11.73□□□□□ -0.53
VPS13D-212ENST00000543766 KAT6BQ8WYB5 2073 aa11.73□□□□□ -0.53
VPS13D-212ENST00000543766 CCDC27Q2M243 656 aa11.73□□□□□ -0.53
VPS13D-212ENST00000543766 CHRM1P11229 460 aaPredicted RBP11.73□□□□□ -0.53
VPS13D-212ENST00000543766 BAZ1BQ9UIG0 1483 aaKnown RBP11.71□□□□□ -0.53
VPS13D-212ENST00000543766 C11orf95C9JLR9 678 aaPredicted RBP11.71□□□□□ -0.54
VPS13D-212ENST00000543766 ABCC8Q09428 1581 aa11.71□□□□□ -0.54
VPS13D-212ENST00000543766 RGS22Q8NE09 1264 aa11.7□□□□□ -0.54
VPS13D-212ENST00000543766 MTMR7Q9Y216 660 aa11.7□□□□□ -0.54
VPS13D-212ENST00000543766 MCCP23508 829 aa11.69□□□□□ -0.54
VPS13D-212ENST00000543766 CC2D1BQ5T0F9 858 aaKnown RBP11.69□□□□□ -0.54
VPS13D-212ENST00000543766 CFTRP13569 1480 aa11.69□□□□□ -0.54
VPS13D-212ENST00000543766 TNNT2P45379 298 aaPredicted RBP11.68□□□□□ -0.54
VPS13D-212ENST00000543766 EEA1Q15075 1411 aa11.68□□□□□ -0.54
VPS13D-212ENST00000543766 ZNF622Q969S3 477 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS13D-212ENST00000543766 GRIPAP1Q4V328 841 aa11.66□□□□□ -0.54
VPS13D-212ENST00000543766 DNAJC2Q99543 621 aaKnown RBP11.66□□□□□ -0.54
VPS13D-212ENST00000543766 CEP162Q5TB80 1403 aa11.65□□□□□ -0.54
VPS13D-212ENST00000543766 ZBTB12Q9Y330 459 aaPredicted RBP11.65□□□□□ -0.54
VPS13D-212ENST00000543766 TARBP1Q13395 1621 aaKnown RBP11.64□□□□□ -0.55
VPS13D-212ENST00000543766 NOP58Q9Y2X3 529 aaKnown RBP11.64□□□□□ -0.55
VPS13D-212ENST00000543766 CALD1Q05682 793 aaKnown RBP11.63□□□□□ -0.55
VPS13D-212ENST00000543766 BIVM-ERCC5R4GMW8 1640 aa11.62□□□□□ -0.55
VPS13D-212ENST00000543766 PLEKHD1A6NEE1 506 aa11.62□□□□□ -0.55
VPS13D-212ENST00000543766 SYNJ1O43426 1573 aa11.61□□□□□ -0.55
VPS13D-212ENST00000543766 PRDM4Q9UKN5 801 aa11.61□□□□□ -0.55
VPS13D-212ENST00000543766 NESP48681 1621 aa11.61□□□□□ -0.55
VPS13D-212ENST00000543766 NPM1P06748 294 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS13D-212ENST00000543766 RGL3Q3MIN7 710 aa11.6□□□□□ -0.55
VPS13D-212ENST00000543766 TNIKQ9UKE5 1360 aa11.59□□□□□ -0.55
VPS13D-212ENST00000543766 MRC2Q9UBG0 1479 aa11.59□□□□□ -0.55
VPS13D-212ENST00000543766 TOP2BQ02880 1626 aa11.58□□□□□ -0.56
VPS13D-212ENST00000543766 SETQ01105 290 aaPredicted RBP11.58□□□□□ -0.56
VPS13D-212ENST00000543766 CHMP4CQ96CF2 233 aa11.58□□□□□ -0.56
VPS13D-212ENST00000543766 KIF21BO75037 1637 aa11.58□□□□□ -0.56
VPS13D-212ENST00000543766 PHF14O94880 888 aa11.58□□□□□ -0.56
VPS13D-212ENST00000543766 SLC52A1Q9NWF4 448 aa11.58□□□□□ -0.56
VPS13D-212ENST00000543766 ARMCX6Q7L4S7 300 aa11.57□□□□□ -0.56
VPS13D-212ENST00000543766 LAS1LQ9Y4W2 734 aaKnown RBP11.57□□□□□ -0.56
VPS13D-212ENST00000543766 PNNQ9H307 717 aaKnown RBP11.56□□□□□ -0.56
VPS13D-212ENST00000543766 ARID4AP29374 1257 aaPredicted RBP11.55□□□□□ -0.56
VPS13D-212ENST00000543766 KCNH8Q96L42 1107 aa11.55□□□□□ -0.56
VPS13D-212ENST00000543766 C1orf115Q9H7X2 142 aa11.54□□□□□ -0.56
VPS13D-212ENST00000543766 PIK3R5Q8WYR1 880 aa11.54□□□□□ -0.56
VPS13D-212ENST00000543766 DHX57Q6P158 1386 aaKnown RBP11.54□□□□□ -0.56
VPS13D-212ENST00000543766 TMEM51Q9NW97 253 aa11.54□□□□□ -0.56
VPS13D-212ENST00000543766 POLD1P28340 1107 aa11.53□□□□□ -0.56
VPS13D-212ENST00000543766 NGEFQ8N5V2 710 aa11.52□□□□□ -0.56
VPS13D-212ENST00000543766 DNAJC5Q9H3Z4 198 aa11.52□□□□□ -0.57
VPS13D-212ENST00000543766 URB2Q14146 1524 aaKnown RBP11.52□□□□□ -0.57
VPS13D-212ENST00000543766 SOGA1O94964 1423 aa11.51□□□□□ -0.57
VPS13D-212ENST00000543766 TMTC2Q8N394 836 aa11.51□□□□□ -0.57
VPS13D-212ENST00000543766 AXDND1Q5T1B0 1012 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-212ENST00000543766 ZBTB9Q96C00 473 aa11.5□□□□□ -0.57
VPS13D-212ENST00000543766 FAM43AQ8N2R8 423 aa11.5□□□□□ -0.57
VPS13D-212ENST00000543766 CC2D2BQ6DHV5 1058 aa11.49□□□□□ -0.57
VPS13D-212ENST00000543766 CADPSQ9ULU8 1353 aa11.49□□□□□ -0.57
VPS13D-212ENST00000543766 SEMA3FQ13275 785 aa11.49□□□□□ -0.57
VPS13D-212ENST00000543766 GOLGA3Q08378 1498 aa11.49□□□□□ -0.57
VPS13D-212ENST00000543766 ZBTB47Q9UFB7 747 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms