RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
CLSTN3-212ENST00000541770 CDK13Q14004 1512 aaKnown RBP14.38□□□□□ -0.11
CLSTN3-212ENST00000541770 PREX1Q8TCU6 1659 aa14.38□□□□□ -0.11
CLSTN3-212ENST00000541770 SCAPERQ9BY12 1400 aa14.37□□□□□ -0.11
CLSTN3-212ENST00000541770 MAGI2Q86UL8 1455 aa14.37□□□□□ -0.11
CLSTN3-212ENST00000541770 MYO5CQ9NQX4 1742 aa14.36□□□□□ -0.11
CLSTN3-212ENST00000541770 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
CLSTN3-212ENST00000541770 MYT1LQ9UL68 1186 aa14.35□□□□□ -0.11
CLSTN3-212ENST00000541770 CEBPAP49715 358 aaPredicted RBP14.34□□□□□ -0.11
CLSTN3-212ENST00000541770 ILDR2Q71H61 639 aa14.34□□□□□ -0.11
CLSTN3-212ENST00000541770 PLCH2O75038 1416 aa14.32□□□□□ -0.12
CLSTN3-212ENST00000541770 C9orf84Q5VXU9 1444 aa14.32□□□□□ -0.12
CLSTN3-212ENST00000541770 ATP10AO60312 1499 aa14.32□□□□□ -0.12
CLSTN3-212ENST00000541770 ARHGEF12Q9NZN5 1544 aa14.31□□□□□ -0.12
CLSTN3-212ENST00000541770 DISP3Q9P2K9 1392 aa14.31□□□□□ -0.12
CLSTN3-212ENST00000541770 STRCQ7RTU9 1775 aa14.3□□□□□ -0.12
CLSTN3-212ENST00000541770 EFCAB2Q5VUJ9 269 aa14.3□□□□□ -0.12
CLSTN3-212ENST00000541770 KIF14Q15058 1648 aa14.29□□□□□ -0.12
CLSTN3-212ENST00000541770 ARHGAP5Q13017 1502 aa14.28□□□□□ -0.12
CLSTN3-212ENST00000541770 UHRF1BP1Q6BDS2 1440 aa14.27□□□□□ -0.12
CLSTN3-212ENST00000541770 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.13
CLSTN3-212ENST00000541770 SOCS7O14512 581 aa14.25□□□□□ -0.13
CLSTN3-212ENST00000541770 UBTFP17480 764 aaKnown RBP14.25□□□□□ -0.13
CLSTN3-212ENST00000541770 AFAP1Q8N556 730 aa14.25□□□□□ -0.13
CLSTN3-212ENST00000541770 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
CLSTN3-212ENST00000541770 C3P01024 1663 aa14.25□□□□□ -0.13
CLSTN3-212ENST00000541770 ZNF518AQ6AHZ1 1483 aa14.25□□□□□ -0.13
CLSTN3-212ENST00000541770 SETD1BQ9UPS6 1966 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-212ENST00000541770 ESF1Q9H501 851 aaKnown RBP14.24□□□□□ -0.13
CLSTN3-212ENST00000541770 FMN1Q68DA7 1419 aa14.24□□□□□ -0.13
CLSTN3-212ENST00000541770 DIP2CQ9Y2E4 1556 aa14.23□□□□□ -0.13
CLSTN3-212ENST00000541770 LRRIQ1Q96JM4 1722 aa14.22□□□□□ -0.13
CLSTN3-212ENST00000541770 CDC42BPBQ9Y5S2 1711 aa14.22□□□□□ -0.13
CLSTN3-212ENST00000541770 ABCA6Q8N139 1617 aa14.22□□□□□ -0.13
CLSTN3-212ENST00000541770 KDM5CP41229 1560 aa14.22□□□□□ -0.13
CLSTN3-212ENST00000541770 CLIP1P30622 1438 aa14.21□□□□□ -0.13
CLSTN3-212ENST00000541770 SPATA31D1Q6ZQQ2 1576 aa14.21□□□□□ -0.14
CLSTN3-212ENST00000541770 TROQ12816 1431 aaPredicted RBP14.2□□□□□ -0.14
CLSTN3-212ENST00000541770 ARHGAP35Q9NRY4 1499 aa14.18□□□□□ -0.14
CLSTN3-212ENST00000541770 REREQ9P2R6 1566 aa14.17□□□□□ -0.14
CLSTN3-212ENST00000541770 ITSN2Q9NZM3 1697 aa14.17□□□□□ -0.14
CLSTN3-212ENST00000541770 PTPRTO14522 1441 aa14.16□□□□□ -0.14
CLSTN3-212ENST00000541770 PREX2Q70Z35 1606 aa14.16□□□□□ -0.14
CLSTN3-212ENST00000541770 MLH3Q9UHC1 1453 aa14.14□□□□□ -0.15
CLSTN3-212ENST00000541770 SUPT6HQ7KZ85 1726 aaKnown RBP14.14□□□□□ -0.15
CLSTN3-212ENST00000541770 ABCC1P33527 1531 aa14.14□□□□□ -0.15
CLSTN3-212ENST00000541770 TRAPPC8Q9Y2L5 1435 aa14.14□□□□□ -0.15
CLSTN3-212ENST00000541770 KIDINS220Q9ULH0 1771 aa14.14□□□□□ -0.15
CLSTN3-212ENST00000541770 CDC42BPAQ5VT25 1732 aa14.12□□□□□ -0.15
CLSTN3-212ENST00000541770 LTBP4Q8N2S1 1624 aa14.12□□□□□ -0.15
CLSTN3-212ENST00000541770 AGLP35573 1532 aa14.12□□□□□ -0.15
CLSTN3-212ENST00000541770 CAMSAP1Q5T5Y3 1602 aa14.12□□□□□ -0.15
CLSTN3-212ENST00000541770 ZNF777Q9ULD5 760 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-212ENST00000541770 NCOA1Q15788 1441 aa14.1□□□□□ -0.15
CLSTN3-212ENST00000541770 CNTLNQ9NXG0 1405 aa14.09□□□□□ -0.15
CLSTN3-212ENST00000541770 MROH2AA6NES4 1674 aa14.09□□□□□ -0.15
CLSTN3-212ENST00000541770 CLTCQ00610 1675 aaKnown RBP14.08□□□□□ -0.16
CLSTN3-212ENST00000541770 IQSEC2Q5JU85 1478 aa14.07□□□□□ -0.16
CLSTN3-212ENST00000541770 CCDC18Q5T9S5 1454 aa14.07□□□□□ -0.16
CLSTN3-212ENST00000541770 NCKAP5LQ9HCH0 1330 aa14.07□□□□□ -0.16
CLSTN3-212ENST00000541770 SAMD9LQ8IVG5 1584 aa14.06□□□□□ -0.16
CLSTN3-212ENST00000541770 UBAP1LF5GYI3 381 aa14.05□□□□□ -0.16
CLSTN3-212ENST00000541770 ZNF335Q9H4Z2 1342 aaPredicted RBP14.05□□□□□ -0.16
CLSTN3-212ENST00000541770 ZMYM3Q14202 1370 aa14.05□□□□□ -0.16
CLSTN3-212ENST00000541770 SYCP2Q9BX26 1530 aa14.05□□□□□ -0.16
CLSTN3-212ENST00000541770 MYO3AQ8NEV4 1616 aa14.04□□□□□ -0.16
CLSTN3-212ENST00000541770 NPATQ14207 1427 aa14.04□□□□□ -0.16
CLSTN3-212ENST00000541770 HNRNPMP52272 730 aaKnown RBP eCLIP14.03□□□□□ -0.16
CLSTN3-212ENST00000541770 SPAG9O60271 1321 aaKnown RBP14.03□□□□□ -0.16
CLSTN3-212ENST00000541770 CASKIN1Q8WXD9 1431 aa14.03□□□□□ -0.16
CLSTN3-212ENST00000541770 ZNF142P52746 1687 aaPredicted RBP14.02□□□□□ -0.16
CLSTN3-212ENST00000541770 GGT6Q6P531 493 aa14.01□□□□□ -0.17
CLSTN3-212ENST00000541770 CEP170BQ9Y4F5 1589 aaPredicted RBP14□□□□□ -0.17
CLSTN3-212ENST00000541770 ATP7AQ04656 1500 aa14□□□□□ -0.17
CLSTN3-212ENST00000541770 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
CLSTN3-212ENST00000541770 INO80Q9ULG1 1556 aaPredicted RBP13.98□□□□□ -0.17
CLSTN3-212ENST00000541770 PKD2Q13563 968 aa13.98□□□□□ -0.17
CLSTN3-212ENST00000541770 A2MP01023 1474 aa13.98□□□□□ -0.17
CLSTN3-212ENST00000541770 GPATCH8Q9UKJ3 1502 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-212ENST00000541770 FYCO1Q9BQS8 1478 aa13.97□□□□□ -0.17
CLSTN3-212ENST00000541770 ADGBQ8N7X0 1667 aa13.97□□□□□ -0.17
CLSTN3-212ENST00000541770 PLA2R1Q13018 1463 aa13.96□□□□□ -0.17
CLSTN3-212ENST00000541770 CFDP1Q9UEE9 299 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-212ENST00000541770 PPP6R1Q9UPN7 881 aa13.96□□□□□ -0.17
CLSTN3-212ENST00000541770 PTPRKQ15262 1439 aa13.96□□□□□ -0.18
CLSTN3-212ENST00000541770 PLXNC1O60486 1568 aa13.96□□□□□ -0.18
CLSTN3-212ENST00000541770 PIP4K2BP78356 416 aa13.95□□□□□ -0.18
CLSTN3-212ENST00000541770 POLR1AO95602 1720 aaPredicted RBP13.95□□□□□ -0.18
CLSTN3-212ENST00000541770 PLEKHH2Q8IVE3 1493 aa13.94□□□□□ -0.18
CLSTN3-212ENST00000541770 CCNB3Q8WWL7 1395 aa13.94□□□□□ -0.18
CLSTN3-212ENST00000541770 TCOF1Q13428 1488 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-212ENST00000541770 DNMT1P26358 1616 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-212ENST00000541770 LOC105371045A0A1W2PR82 267 aa13.92□□□□□ -0.18
CLSTN3-212ENST00000541770 KIAA1107Q9UPP5 1409 aa13.91□□□□□ -0.18
CLSTN3-212ENST00000541770 HSPA1LP34931 641 aa13.9□□□□□ -0.18
CLSTN3-212ENST00000541770 MTUS2Q5JR59 1369 aa13.9□□□□□ -0.18
CLSTN3-212ENST00000541770 A2ML1A8K2U0 1454 aa13.9□□□□□ -0.18
CLSTN3-212ENST00000541770 MED1Q15648 1581 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-212ENST00000541770 TOM1O60784 492 aa13.88□□□□□ -0.19
CLSTN3-212ENST00000541770 ZNF644Q9H582 1327 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms