RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 ARHGEF12Q9NZN5 1544 aa16.5■□□□□ 0.23
YBX3-211ENST00000541351 LTBP4Q8N2S1 1624 aa16.49■□□□□ 0.23
YBX3-211ENST00000541351 PHF23Q9BUL5 403 aaPredicted RBP16.46■□□□□ 0.23
YBX3-211ENST00000541351 ESF1Q9H501 851 aaKnown RBP16.46■□□□□ 0.23
YBX3-211ENST00000541351 C9orf84Q5VXU9 1444 aa16.45■□□□□ 0.22
YBX3-211ENST00000541351 PLEKHD1A6NEE1 506 aa16.45■□□□□ 0.22
YBX3-211ENST00000541351 CEBPAP49715 358 aaPredicted RBP16.45■□□□□ 0.22
YBX3-211ENST00000541351 ATP10AO60312 1499 aa16.45■□□□□ 0.22
YBX3-211ENST00000541351 MED1Q15648 1581 aaPredicted RBP16.4■□□□□ 0.22
YBX3-211ENST00000541351 HECW1Q76N89 1606 aa16.4■□□□□ 0.22
YBX3-211ENST00000541351 NCOA1Q15788 1441 aa16.39■□□□□ 0.21
YBX3-211ENST00000541351 RAPGEF6Q8TEU7 1601 aa16.38■□□□□ 0.21
YBX3-211ENST00000541351 TRAPPC8Q9Y2L5 1435 aa16.37■□□□□ 0.21
YBX3-211ENST00000541351 P3H3Q8IVL6 736 aa16.37■□□□□ 0.21
YBX3-211ENST00000541351 SCAPERQ9BY12 1400 aa16.36■□□□□ 0.21
YBX3-211ENST00000541351 SIGLEC1Q9BZZ2 1709 aa16.36■□□□□ 0.21
YBX3-211ENST00000541351 SCAF1Q9H7N4 1312 aaKnown RBP16.35■□□□□ 0.21
YBX3-211ENST00000541351 TOM1O60784 492 aa16.34■□□□□ 0.21
YBX3-211ENST00000541351 MYT1LQ9UL68 1186 aa16.32■□□□□ 0.2
YBX3-211ENST00000541351 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.31■□□□□ 0.2
YBX3-211ENST00000541351 CNTLNQ9NXG0 1405 aa16.31■□□□□ 0.2
YBX3-211ENST00000541351 HSPA1LP34931 641 aa16.31■□□□□ 0.2
YBX3-211ENST00000541351 PKD2Q13563 968 aa16.31■□□□□ 0.2
YBX3-211ENST00000541351 NUP153P49790 1475 aaKnown RBP16.3■□□□□ 0.2
YBX3-211ENST00000541351 ZNF335Q9H4Z2 1342 aaPredicted RBP16.3■□□□□ 0.2
YBX3-211ENST00000541351 EFCAB2Q5VUJ9 269 aa16.29■□□□□ 0.2
YBX3-211ENST00000541351 ZNF518AQ6AHZ1 1483 aa16.29■□□□□ 0.2
YBX3-211ENST00000541351 PLCH2O75038 1416 aa16.28■□□□□ 0.2
YBX3-211ENST00000541351 PIP4K2BP78356 416 aa16.27■□□□□ 0.2
YBX3-211ENST00000541351 CAMSAP1Q5T5Y3 1602 aa16.27■□□□□ 0.19
YBX3-211ENST00000541351 C3P01024 1663 aa16.26■□□□□ 0.19
YBX3-211ENST00000541351 NPATQ14207 1427 aa16.26■□□□□ 0.19
YBX3-211ENST00000541351 PRXQ9BXM0 1461 aa16.25■□□□□ 0.19
YBX3-211ENST00000541351 AGLP35573 1532 aa16.24■□□□□ 0.19
YBX3-211ENST00000541351 SAMD9Q5K651 1589 aa16.24■□□□□ 0.19
YBX3-211ENST00000541351 REREQ9P2R6 1566 aa16.24■□□□□ 0.19
YBX3-211ENST00000541351 PLA2R1Q13018 1463 aa16.23■□□□□ 0.19
YBX3-211ENST00000541351 PPP6R1Q9UPN7 881 aa16.22■□□□□ 0.19
YBX3-211ENST00000541351 NCKAP5LQ9HCH0 1330 aa16.21■□□□□ 0.19
YBX3-211ENST00000541351 PTPRKQ15262 1439 aa16.19■□□□□ 0.18
YBX3-211ENST00000541351 CPS1P31327 1500 aa16.19■□□□□ 0.18
YBX3-211ENST00000541351 CDK11AQ9UQ88 783 aaPredicted RBP16.17■□□□□ 0.18
YBX3-211ENST00000541351 KDM5CP41229 1560 aa16.17■□□□□ 0.18
YBX3-211ENST00000541351 AFAP1Q8N556 730 aa16.15■□□□□ 0.18
YBX3-211ENST00000541351 DIP2CQ9Y2E4 1556 aa16.14■□□□□ 0.17
YBX3-211ENST00000541351 TCOF1Q13428 1488 aaKnown RBP16.14■□□□□ 0.17
YBX3-211ENST00000541351 MLH3Q9UHC1 1453 aa16.14■□□□□ 0.17
YBX3-211ENST00000541351 MYO5CQ9NQX4 1742 aa16.12■□□□□ 0.17
YBX3-211ENST00000541351 ZMYM3Q14202 1370 aa16.12■□□□□ 0.17
YBX3-211ENST00000541351 MROH2AA6NES4 1674 aa16.11■□□□□ 0.17
YBX3-211ENST00000541351 ARHGAP5Q13017 1502 aa16.09■□□□□ 0.17
YBX3-211ENST00000541351 ZNF142P52746 1687 aaPredicted RBP16.09■□□□□ 0.17
YBX3-211ENST00000541351 SUPT6HQ7KZ85 1726 aaKnown RBP16.08■□□□□ 0.17
YBX3-211ENST00000541351 CEP170BQ9Y4F5 1589 aaPredicted RBP16.08■□□□□ 0.16
YBX3-211ENST00000541351 SHANK2Q9UPX8 1470 aa16.07■□□□□ 0.16
YBX3-211ENST00000541351 ABCA6Q8N139 1617 aa16.06■□□□□ 0.16
YBX3-211ENST00000541351 MYO3AQ8NEV4 1616 aa16.05■□□□□ 0.16
YBX3-211ENST00000541351 CLIP1P30622 1438 aa16.04■□□□□ 0.16
YBX3-211ENST00000541351 RANGAP1P46060 587 aaPredicted RBP16.04■□□□□ 0.16
YBX3-211ENST00000541351 KIF14Q15058 1648 aa16.03■□□□□ 0.16
YBX3-211ENST00000541351 CDK13Q14004 1512 aaKnown RBP16.02■□□□□ 0.15
YBX3-211ENST00000541351 A2ML1A8K2U0 1454 aa15.99■□□□□ 0.15
YBX3-211ENST00000541351 RGS17Q9UGC6 210 aaPredicted RBP15.99■□□□□ 0.15
YBX3-211ENST00000541351 ANKLE2Q86XL3 938 aa15.98■□□□□ 0.15
YBX3-211ENST00000541351 ATP1B4Q9UN42 357 aaPredicted RBP15.98■□□□□ 0.15
YBX3-211ENST00000541351 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
YBX3-211ENST00000541351 TROQ12816 1431 aaPredicted RBP15.96■□□□□ 0.15
YBX3-211ENST00000541351 SENP3Q9H4L4 574 aaPredicted RBP15.95■□□□□ 0.14
YBX3-211ENST00000541351 FMN1Q68DA7 1419 aa15.94■□□□□ 0.14
YBX3-211ENST00000541351 POLR1AO95602 1720 aaPredicted RBP15.94■□□□□ 0.14
YBX3-211ENST00000541351 ABCC1P33527 1531 aa15.94■□□□□ 0.14
YBX3-211ENST00000541351 THEMISQ8N1K5 641 aaPredicted RBP15.92■□□□□ 0.14
YBX3-211ENST00000541351 DNMT1P26358 1616 aaKnown RBP15.92■□□□□ 0.14
YBX3-211ENST00000541351 KIDINS220Q9ULH0 1771 aa15.92■□□□□ 0.14
YBX3-211ENST00000541351 CLTCQ00610 1675 aaKnown RBP15.92■□□□□ 0.14
YBX3-211ENST00000541351 RNF17Q9BXT8 1623 aaKnown RBP15.91■□□□□ 0.14
YBX3-211ENST00000541351 SPAG9O60271 1321 aaKnown RBP15.91■□□□□ 0.14
YBX3-211ENST00000541351 GGT6Q6P531 493 aa15.9■□□□□ 0.14
YBX3-211ENST00000541351 POTEAQ6S8J7 498 aa15.9■□□□□ 0.14
YBX3-211ENST00000541351 ITSN2Q9NZM3 1697 aa15.89■□□□□ 0.13
YBX3-211ENST00000541351 VWDEQ8N2E2 1590 aa15.88■□□□□ 0.13
YBX3-211ENST00000541351 NEURL4Q96JN8 1562 aa15.88■□□□□ 0.13
YBX3-211ENST00000541351 SYNMO15061 1565 aa15.87■□□□□ 0.13
YBX3-211ENST00000541351 ALKQ9UM73 1620 aa15.87■□□□□ 0.13
YBX3-211ENST00000541351 NPHP4O75161 1426 aaPredicted RBP15.87■□□□□ 0.13
YBX3-211ENST00000541351 TNRQ92752 1358 aa15.87■□□□□ 0.13
YBX3-211ENST00000541351 MED14O60244 1454 aa15.86■□□□□ 0.13
YBX3-211ENST00000541351 PREX2Q70Z35 1606 aa15.86■□□□□ 0.13
YBX3-211ENST00000541351 CDC42BPBQ9Y5S2 1711 aa15.85■□□□□ 0.13
YBX3-211ENST00000541351 A2MP01023 1474 aa15.85■□□□□ 0.13
YBX3-211ENST00000541351 FAM135AQ9P2D6 1515 aa15.84■□□□□ 0.13
YBX3-211ENST00000541351 SAMD9LQ8IVG5 1584 aa15.84■□□□□ 0.13
YBX3-211ENST00000541351 EEA1Q15075 1411 aa15.84■□□□□ 0.13
YBX3-211ENST00000541351 LRRC7Q96NW7 1537 aa15.84■□□□□ 0.13
YBX3-211ENST00000541351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.83■□□□□ 0.12
YBX3-211ENST00000541351 DEPDC5O75140 1603 aa15.83■□□□□ 0.12
YBX3-211ENST00000541351 PLXNC1O60486 1568 aa15.82■□□□□ 0.12
YBX3-211ENST00000541351 FAM135BQ49AJ0 1406 aa15.81■□□□□ 0.12
YBX3-211ENST00000541351 NLRP1Q9C000 1473 aa15.81■□□□□ 0.12
YBX3-211ENST00000541351 ATP7AQ04656 1500 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms