RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 MPHOSPH9Q99550 1183 aa18.68■□□□□ 0.58
COLCA1-204ENST00000540738 PAK3O75914 559 aaPredicted RBP18.68■□□□□ 0.58
COLCA1-204ENST00000540738 U2SURPO15042 1029 aaKnown RBP18.66■□□□□ 0.58
COLCA1-204ENST00000540738 TNNT2P45379 298 aaPredicted RBP18.66■□□□□ 0.58
COLCA1-204ENST00000540738 SOX12O15370 315 aa18.65■□□□□ 0.58
COLCA1-204ENST00000540738 ANP32AP39687 249 aaKnown RBP18.65■□□□□ 0.58
COLCA1-204ENST00000540738 GTF3C3Q9Y5Q9 886 aa18.65■□□□□ 0.58
COLCA1-204ENST00000540738 CSB-PGBD3P0DP91 1061 aa18.65■□□□□ 0.58
COLCA1-204ENST00000540738 NESP48681 1621 aa18.65■□□□□ 0.58
COLCA1-204ENST00000540738 MORC1Q86VD1 984 aa18.64■□□□□ 0.57
COLCA1-204ENST00000540738 LAS1LQ9Y4W2 734 aaKnown RBP18.61■□□□□ 0.57
COLCA1-204ENST00000540738 CCDC136Q96JN2 1154 aa18.61■□□□□ 0.57
COLCA1-204ENST00000540738 UACAQ9BZF9 1416 aa18.61■□□□□ 0.57
COLCA1-204ENST00000540738 CCDC9Q9Y3X0 531 aaKnown RBP18.59■□□□□ 0.57
COLCA1-204ENST00000540738 ROCK2O75116 1388 aaKnown RBP18.59■□□□□ 0.57
COLCA1-204ENST00000540738 NEUROD2Q15784 382 aa18.59■□□□□ 0.57
COLCA1-204ENST00000540738 CC2D1BQ5T0F9 858 aaKnown RBP18.59■□□□□ 0.57
COLCA1-204ENST00000540738 PRG4Q92954 1404 aaPredicted RBP18.59■□□□□ 0.57
COLCA1-204ENST00000540738 CHMP4BQ9H444 224 aaKnown RBP18.58■□□□□ 0.57
COLCA1-204ENST00000540738 NGDNQ8NEJ9 315 aaKnown RBP18.58■□□□□ 0.57
COLCA1-204ENST00000540738 TERF2IPQ9NYB0 399 aa18.58■□□□□ 0.57
COLCA1-204ENST00000540738 VGFO15240 615 aaPredicted RBP18.58■□□□□ 0.56
COLCA1-204ENST00000540738 FKBP8Q14318 412 aa18.57■□□□□ 0.56
COLCA1-204ENST00000540738 FOXD1Q16676 465 aa18.56■□□□□ 0.56
COLCA1-204ENST00000540738 RTF1Q92541 710 aaKnown RBP18.56■□□□□ 0.56
COLCA1-204ENST00000540738 FTSJ3Q8IY81 847 aaKnown RBP18.54■□□□□ 0.56
COLCA1-204ENST00000540738 TOPBP1Q92547 1522 aa18.54■□□□□ 0.56
COLCA1-204ENST00000540738 SYNJ2O15056 1496 aa18.54■□□□□ 0.56
COLCA1-204ENST00000540738 RAB3GAP2Q9H2M9 1393 aa18.53■□□□□ 0.56
COLCA1-204ENST00000540738 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.53■□□□□ 0.56
COLCA1-204ENST00000540738 MS4A1P11836 297 aa18.52■□□□□ 0.56
COLCA1-204ENST00000540738 CHMP4AQ9BY43 222 aa18.51■□□□□ 0.55
COLCA1-204ENST00000540738 CCDC144AA2RUR9 1427 aa18.51■□□□□ 0.55
COLCA1-204ENST00000540738 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
COLCA1-204ENST00000540738 LAMC3Q9Y6N6 1575 aa18.5■□□□□ 0.55
COLCA1-204ENST00000540738 NUTM2DQ5VT03 806 aaPredicted RBP18.5■□□□□ 0.55
COLCA1-204ENST00000540738 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
COLCA1-204ENST00000540738 MYOM3Q5VTT5 1437 aa18.49■□□□□ 0.55
COLCA1-204ENST00000540738 EIF5BO60841 1220 aaKnown RBP18.48■□□□□ 0.55
COLCA1-204ENST00000540738 SNAPC4Q5SXM2 1469 aa18.46■□□□□ 0.55
COLCA1-204ENST00000540738 CALD1Q05682 793 aaKnown RBP18.46■□□□□ 0.55
COLCA1-204ENST00000540738 POLA1P09884 1462 aaPredicted RBP18.44■□□□□ 0.54
COLCA1-204ENST00000540738 PRDM2Q13029 1718 aa18.44■□□□□ 0.54
COLCA1-204ENST00000540738 KTN1Q86UP2 1357 aaKnown RBP18.44■□□□□ 0.54
COLCA1-204ENST00000540738 DNMBPQ6XZF7 1577 aa18.44■□□□□ 0.54
COLCA1-204ENST00000540738 HSPA5P11021 654 aaKnown RBP18.43■□□□□ 0.54
COLCA1-204ENST00000540738 GOLGA2Q08379 1002 aa18.43■□□□□ 0.54
COLCA1-204ENST00000540738 MIER1Q8N108 512 aa18.42■□□□□ 0.54
COLCA1-204ENST00000540738 CUX1P39880 1505 aa18.41■□□□□ 0.54
COLCA1-204ENST00000540738 CASC1Q6TDU7 716 aa18.41■□□□□ 0.54
COLCA1-204ENST00000540738 OS9Q13438 667 aaPredicted RBP18.41■□□□□ 0.54
COLCA1-204ENST00000540738 AMPHP49418 695 aa18.4■□□□□ 0.54
COLCA1-204ENST00000540738 TRAK1Q9UPV9 953 aa18.4■□□□□ 0.54
COLCA1-204ENST00000540738 BICRAQ9NZM4 1560 aa18.39■□□□□ 0.53
COLCA1-204ENST00000540738 TMX4Q9H1E5 349 aaPredicted RBP18.39■□□□□ 0.53
COLCA1-204ENST00000540738 ARHGAP5Q13017 1502 aa18.38■□□□□ 0.53
COLCA1-204ENST00000540738 STAC3Q96MF2 364 aa18.37■□□□□ 0.53
COLCA1-204ENST00000540738 KIF15Q9NS87 1388 aa18.37■□□□□ 0.53
COLCA1-204ENST00000540738 NUTM2FA1L443 756 aa18.36■□□□□ 0.53
COLCA1-204ENST00000540738 U2AF1L5P0DN76 240 aaPredicted RBP18.36■□□□□ 0.53
COLCA1-204ENST00000540738 U2AF1Q01081 240 aaKnown RBP eCLIP18.36■□□□□ 0.53
COLCA1-204ENST00000540738 POGZQ7Z3K3 1410 aa18.36■□□□□ 0.53
COLCA1-204ENST00000540738 L3MBTL2Q969R5 705 aa18.36■□□□□ 0.53
COLCA1-204ENST00000540738 ANP32BQ92688 251 aaKnown RBP18.36■□□□□ 0.53
COLCA1-204ENST00000540738 CASKIN1Q8WXD9 1431 aa18.35■□□□□ 0.53
COLCA1-204ENST00000540738 EVC2Q86UK5 1308 aa18.34■□□□□ 0.53
COLCA1-204ENST00000540738 ATF3P18847 181 aa18.34■□□□□ 0.53
COLCA1-204ENST00000540738 PLEKHH2Q8IVE3 1493 aa18.34■□□□□ 0.53
COLCA1-204ENST00000540738 RALBP1Q15311 655 aa18.34■□□□□ 0.53
COLCA1-204ENST00000540738 FRAT1Q92837 279 aaPredicted RBP18.34■□□□□ 0.53
COLCA1-204ENST00000540738 MEX3CQ5U5Q3 659 aaKnown RBP18.34■□□□□ 0.53
COLCA1-204ENST00000540738 EVA1CP58658 441 aa18.32■□□□□ 0.52
COLCA1-204ENST00000540738 ERICH3Q5RHP9 1530 aa18.32■□□□□ 0.52
COLCA1-204ENST00000540738 FYCO1Q9BQS8 1478 aa18.3■□□□□ 0.52
COLCA1-204ENST00000540738 EFCAB5A4FU69 1503 aa18.3■□□□□ 0.52
COLCA1-204ENST00000540738 ZNF330Q9Y3S2 320 aaPredicted RBP18.29■□□□□ 0.52
COLCA1-204ENST00000540738 AFAP1Q8N556 730 aa18.29■□□□□ 0.52
COLCA1-204ENST00000540738 LMOD3Q0VAK6 560 aa18.29■□□□□ 0.52
COLCA1-204ENST00000540738 KIAA0586Q9BVV6 1533 aa18.28■□□□□ 0.52
COLCA1-204ENST00000540738 TOP2BQ02880 1626 aa18.28■□□□□ 0.52
COLCA1-204ENST00000540738 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.28■□□□□ 0.52
COLCA1-204ENST00000540738 COG3Q96JB2 828 aa18.28■□□□□ 0.52
COLCA1-204ENST00000540738 FGD6Q6ZV73 1430 aa18.27■□□□□ 0.52
COLCA1-204ENST00000540738 THEMISQ8N1K5 641 aaPredicted RBP18.27■□□□□ 0.51
COLCA1-204ENST00000540738 HDAC5Q9UQL6 1122 aa18.27■□□□□ 0.51
COLCA1-204ENST00000540738 IPO8O15397 1037 aaKnown RBP18.27■□□□□ 0.51
COLCA1-204ENST00000540738 PSME1Q06323 249 aa18.27■□□□□ 0.51
COLCA1-204ENST00000540738 LTV1Q96GA3 475 aaPredicted RBP18.25■□□□□ 0.51
COLCA1-204ENST00000540738 MAGI1Q96QZ7 1491 aaPredicted RBP18.25■□□□□ 0.51
COLCA1-204ENST00000540738 SYNJ1O43426 1573 aa18.25■□□□□ 0.51
COLCA1-204ENST00000540738 SENP3-EIF4A1A0A087X0R7 540 aa18.25■□□□□ 0.51
COLCA1-204ENST00000540738 STK31Q9BXU1 1019 aa18.25■□□□□ 0.51
COLCA1-204ENST00000540738 DHX57Q6P158 1386 aaKnown RBP18.24■□□□□ 0.51
COLCA1-204ENST00000540738 MINK1Q8N4C8 1332 aaPredicted RBP18.24■□□□□ 0.51
COLCA1-204ENST00000540738 ANKRD50Q9ULJ7 1429 aa18.24■□□□□ 0.51
COLCA1-204ENST00000540738 ZNF644Q9H582 1327 aaPredicted RBP18.23■□□□□ 0.51
COLCA1-204ENST00000540738 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
COLCA1-204ENST00000540738 KIF21BO75037 1637 aa18.22■□□□□ 0.51
COLCA1-204ENST00000540738 IRX6P78412 446 aaPredicted RBP18.22■□□□□ 0.51
COLCA1-204ENST00000540738 NCOA2Q15596 1464 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms