RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 JPH4Q96JJ6 628 aa28.17■■■□□ 2.1
TMEM260-203ENST00000539559 FOXD1Q16676 465 aa28.16■■■□□ 2.1
TMEM260-203ENST00000539559 MAGI3Q5TCQ9 1506 aa28.15■■■□□ 2.1
TMEM260-203ENST00000539559 CARMIL2Q6F5E8 1435 aa28.14■■■□□ 2.1
TMEM260-203ENST00000539559 ARID3CA6NKF2 412 aa28.14■■■□□ 2.1
TMEM260-203ENST00000539559 CDK13Q14004 1512 aaKnown RBP28.13■■■□□ 2.09
TMEM260-203ENST00000539559 C11orf95C9JLR9 678 aaPredicted RBP28.1■■■□□ 2.09
TMEM260-203ENST00000539559 ARHGEF11O15085 1522 aa28.09■■■□□ 2.09
TMEM260-203ENST00000539559 RAPGEF6Q8TEU7 1601 aa28.09■■■□□ 2.09
TMEM260-203ENST00000539559 FAM9BQ8IZU0 186 aa28.09■■■□□ 2.09
TMEM260-203ENST00000539559 CDK11AQ9UQ88 783 aaPredicted RBP28.09■■■□□ 2.09
TMEM260-203ENST00000539559 DENND4BO75064 1496 aaPredicted RBP28.08■■■□□ 2.09
TMEM260-203ENST00000539559 NUP153P49790 1475 aaKnown RBP28.07■■■□□ 2.08
TMEM260-203ENST00000539559 EIF4G2P78344 907 aaKnown RBP eCLIP28.06■■■□□ 2.08
TMEM260-203ENST00000539559 KDM6BO15054 1643 aa28.05■■■□□ 2.08
TMEM260-203ENST00000539559 L3MBTL2Q969R5 705 aa28.04■■■□□ 2.08
TMEM260-203ENST00000539559 CNGB1Q14028 1251 aaPredicted RBP28.01■■■□□ 2.07
TMEM260-203ENST00000539559 MPHOSPH9Q99550 1183 aa28■■■□□ 2.07
TMEM260-203ENST00000539559 PLB1Q6P1J6 1458 aa27.98■■■□□ 2.07
TMEM260-203ENST00000539559 B4GALNT3Q6L9W6 998 aa27.97■■■□□ 2.07
TMEM260-203ENST00000539559 MRS2Q9HD23 443 aa27.96■■■□□ 2.07
TMEM260-203ENST00000539559 CNTLNQ9NXG0 1405 aa27.96■■■□□ 2.07
TMEM260-203ENST00000539559 PRKRIP1Q9H875 184 aaPredicted RBP27.95■■■□□ 2.06
TMEM260-203ENST00000539559 CHD1O14646 1710 aa27.94■■■□□ 2.06
TMEM260-203ENST00000539559 FANCIQ9NVI1 1328 aa27.93■■■□□ 2.06
TMEM260-203ENST00000539559 NBPF8Q3BBV2 869 aa27.93■■■□□ 2.06
TMEM260-203ENST00000539559 MIA2Q96PC5 1412 aa27.92■■■□□ 2.06
TMEM260-203ENST00000539559 TCOF1Q13428 1488 aaKnown RBP27.91■■■□□ 2.06
TMEM260-203ENST00000539559 ERICH6Q7L0X2 663 aa27.91■■■□□ 2.06
TMEM260-203ENST00000539559 PPP4R2Q9NY27 417 aa27.91■■■□□ 2.06
TMEM260-203ENST00000539559 PRG4Q92954 1404 aaPredicted RBP27.91■■■□□ 2.06
TMEM260-203ENST00000539559 CCDC7Q96M83 1385 aa27.9■■■□□ 2.06
TMEM260-203ENST00000539559 SENP3-EIF4A1A0A087X0R7 540 aa27.9■■■□□ 2.06
TMEM260-203ENST00000539559 GCC2Q8IWJ2 1684 aa27.85■■■□□ 2.05
TMEM260-203ENST00000539559 TROQ12816 1431 aaPredicted RBP27.85■■■□□ 2.05
TMEM260-203ENST00000539559 ABCA8O94911 1581 aa27.85■■■□□ 2.05
TMEM260-203ENST00000539559 NCOA1Q15788 1441 aa27.84■■■□□ 2.05
TMEM260-203ENST00000539559 PTPRGP23470 1445 aa27.81■■■□□ 2.04
TMEM260-203ENST00000539559 KIF7Q2M1P5 1343 aa27.81■■■□□ 2.04
TMEM260-203ENST00000539559 POLR3GLQ9BT43 218 aa27.8■■■□□ 2.04
TMEM260-203ENST00000539559 ZNF644Q9H582 1327 aaPredicted RBP27.79■■■□□ 2.04
TMEM260-203ENST00000539559 ZBED9Q6R2W3 1325 aa27.78■■■□□ 2.04
TMEM260-203ENST00000539559 SHROOM2Q13796 1616 aa27.76■■■□□ 2.04
TMEM260-203ENST00000539559 ERICH6BQ5W0A0 696 aa27.75■■■□□ 2.03
TMEM260-203ENST00000539559 ATP10BO94823 1461 aa27.74■■■□□ 2.03
TMEM260-203ENST00000539559 PLEKHD1A6NEE1 506 aa27.74■■■□□ 2.03
TMEM260-203ENST00000539559 SLC4A1APQ9BWU0 796 aaKnown RBP27.74■■■□□ 2.03
TMEM260-203ENST00000539559 ANKRD30BQ9BXX2 1392 aa27.74■■■□□ 2.03
TMEM260-203ENST00000539559 ZNF326Q5BKZ1 582 aaKnown RBP27.72■■■□□ 2.03
TMEM260-203ENST00000539559 ADCY10Q96PN6 1610 aa27.71■■■□□ 2.03
TMEM260-203ENST00000539559 AKNAQ7Z591 1439 aa27.7■■■□□ 2.02
TMEM260-203ENST00000539559 RPRD2Q5VT52 1461 aaKnown RBP27.68■■■□□ 2.02
TMEM260-203ENST00000539559 TEX14Q8IWB6 1497 aa27.68■■■□□ 2.02
TMEM260-203ENST00000539559 CFDP1Q9UEE9 299 aaPredicted RBP27.67■■■□□ 2.02
TMEM260-203ENST00000539559 KIF14Q15058 1648 aa27.67■■■□□ 2.02
TMEM260-203ENST00000539559 GPATCH8Q9UKJ3 1502 aaKnown RBP27.65■■■□□ 2.02
TMEM260-203ENST00000539559 ITSN2Q9NZM3 1697 aa27.65■■■□□ 2.02
TMEM260-203ENST00000539559 SPATA31E1Q6ZUB1 1445 aa27.65■■■□□ 2.02
TMEM260-203ENST00000539559 DAPK1P53355 1430 aa27.64■■■□□ 2.02
TMEM260-203ENST00000539559 ABCC5O15440 1437 aa27.62■■■□□ 2.01
TMEM260-203ENST00000539559 CLASP1Q7Z460 1538 aa27.61■■■□□ 2.01
TMEM260-203ENST00000539559 DNMT1P26358 1616 aaKnown RBP27.61■■■□□ 2.01
TMEM260-203ENST00000539559 ERCC6L2Q5T890 1561 aa27.59■■■□□ 2.01
TMEM260-203ENST00000539559 ROCK1Q13464 1354 aa27.59■■■□□ 2.01
TMEM260-203ENST00000539559 CAMSAP2Q08AD1 1489 aa27.58■■■□□ 2.01
TMEM260-203ENST00000539559 PAK3O75914 559 aaPredicted RBP27.56■■■□□ 2
TMEM260-203ENST00000539559 ABCC10Q5T3U5 1492 aa27.55■■■□□ 2
TMEM260-203ENST00000539559 ZNF777Q9ULD5 760 aaPredicted RBP27.54■■■□□ 2
TMEM260-203ENST00000539559 NBR1Q14596 966 aa27.54■■■□□ 2
TMEM260-203ENST00000539559 DHX29Q7Z478 1369 aaKnown RBP27.54■■■□□ 2
TMEM260-203ENST00000539559 CCDC136Q96JN2 1154 aa27.5■■□□□ 1.99
TMEM260-203ENST00000539559 ABCC2Q92887 1545 aa27.5■■□□□ 1.99
TMEM260-203ENST00000539559 NUDCQ9Y266 331 aa27.5■■□□□ 1.99
TMEM260-203ENST00000539559 USP47Q96K76 1375 aa27.49■■□□□ 1.99
TMEM260-203ENST00000539559 SMG6Q86US8 1419 aaKnown RBP27.49■■□□□ 1.99
TMEM260-203ENST00000539559 NOP58Q9Y2X3 529 aaKnown RBP27.48■■□□□ 1.99
TMEM260-203ENST00000539559 BCORL1Q5H9F3 1711 aa27.48■■□□□ 1.99
TMEM260-203ENST00000539559 CDC42BPAQ5VT25 1732 aa27.48■■□□□ 1.99
TMEM260-203ENST00000539559 DEKP35659 375 aaKnown RBP27.47■■□□□ 1.99
TMEM260-203ENST00000539559 PZPP20742 1482 aa27.46■■□□□ 1.99
TMEM260-203ENST00000539559 POLR1AO95602 1720 aaPredicted RBP27.45■■□□□ 1.98
TMEM260-203ENST00000539559 PKD2Q13563 968 aa27.44■■□□□ 1.98
TMEM260-203ENST00000539559 TMC1Q8TDI8 760 aa27.4■■□□□ 1.98
TMEM260-203ENST00000539559 PNISRQ8TF01 805 aaKnown RBP27.39■■□□□ 1.97
TMEM260-203ENST00000539559 UHRF1BP1LA0JNW5 1464 aa27.38■■□□□ 1.97
TMEM260-203ENST00000539559 SALL2Q9Y467 1007 aaPredicted RBP27.38■■□□□ 1.97
TMEM260-203ENST00000539559 ADGRL2O95490 1459 aa27.37■■□□□ 1.97
TMEM260-203ENST00000539559 KDM2AQ9Y2K7 1162 aa27.37■■□□□ 1.97
TMEM260-203ENST00000539559 CROCC2H7BZ55 1655 aa27.37■■□□□ 1.97
TMEM260-203ENST00000539559 ADGBQ8N7X0 1667 aa27.37■■□□□ 1.97
TMEM260-203ENST00000539559 RNF123Q5XPI4 1314 aa27.35■■□□□ 1.97
TMEM260-203ENST00000539559 ANKRD30AQ9BXX3 1397 aa27.35■■□□□ 1.97
TMEM260-203ENST00000539559 MBD5Q9P267 1494 aa27.35■■□□□ 1.97
TMEM260-203ENST00000539559 KIAA1107Q9UPP5 1409 aa27.33■■□□□ 1.97
TMEM260-203ENST00000539559 CARD11Q9BXL7 1154 aa27.32■■□□□ 1.96
TMEM260-203ENST00000539559 PREX2Q70Z35 1606 aa27.32■■□□□ 1.96
TMEM260-203ENST00000539559 SHANK2Q9UPX8 1470 aa27.32■■□□□ 1.96
TMEM260-203ENST00000539559 TSPY4P0CV99 314 aa27.31■■□□□ 1.96
TMEM260-203ENST00000539559 TSPY10P0CW01 314 aa27.31■■□□□ 1.96
TMEM260-203ENST00000539559 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms