RNA–Protein interactions for RNA: ENST00000539338.6

CACNB1-206, Transcript of calcium voltage-gated channel auxiliary subunit beta 1, humanhuman

TSL 1 (best)

Gene CACNB1, Length 5,308 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB1-206ENST00000539338 NCLP19338 710 aaKnown RBP18.83■□□□□ 0.6
CACNB1-206ENST00000539338 TRIM44Q96DX7 344 aaPredicted RBP18.82■□□□□ 0.6
CACNB1-206ENST00000539338 TMF1P82094 1093 aa18.82■□□□□ 0.6
CACNB1-206ENST00000539338 GOLGA6L22H0YM25 854 aa18.81■□□□□ 0.6
CACNB1-206ENST00000539338 NUDCQ9Y266 331 aa18.8■□□□□ 0.6
CACNB1-206ENST00000539338 RBM19Q9Y4C8 960 aaKnown RBP18.79■□□□□ 0.6
CACNB1-206ENST00000539338 U2SURPO15042 1029 aaKnown RBP18.79■□□□□ 0.6
CACNB1-206ENST00000539338 PKD2Q13563 968 aa18.78■□□□□ 0.6
CACNB1-206ENST00000539338 RTN4Q9NQC3 1192 aaKnown RBP18.77■□□□□ 0.6
CACNB1-206ENST00000539338 TPRNQ4KMQ1 711 aa18.76■□□□□ 0.59
CACNB1-206ENST00000539338 MRC2Q9UBG0 1479 aa18.74■□□□□ 0.59
CACNB1-206ENST00000539338 MPHOSPH9Q99550 1183 aa18.73■□□□□ 0.59
CACNB1-206ENST00000539338 CASC1Q6TDU7 716 aa18.72■□□□□ 0.59
CACNB1-206ENST00000539338 TMX4Q9H1E5 349 aaPredicted RBP18.71■□□□□ 0.59
CACNB1-206ENST00000539338 SPAG9O60271 1321 aaKnown RBP18.71■□□□□ 0.59
CACNB1-206ENST00000539338 RSPH4AQ5TD94 716 aa18.71■□□□□ 0.59
CACNB1-206ENST00000539338 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
CACNB1-206ENST00000539338 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
CACNB1-206ENST00000539338 WASHC2CQ9Y4E1 1318 aa18.7■□□□□ 0.58
CACNB1-206ENST00000539338 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
CACNB1-206ENST00000539338 SF3B2Q13435 895 aaKnown RBP18.69■□□□□ 0.58
CACNB1-206ENST00000539338 CC2D2AQ9P2K1 1620 aa18.68■□□□□ 0.58
CACNB1-206ENST00000539338 SAFB2Q14151 953 aaKnown RBP eCLIP18.68■□□□□ 0.58
CACNB1-206ENST00000539338 CSB-PGBD3P0DP91 1061 aa18.67■□□□□ 0.58
CACNB1-206ENST00000539338 MORC1Q86VD1 984 aa18.66■□□□□ 0.58
CACNB1-206ENST00000539338 PTMAP06454 111 aaKnown RBP18.66■□□□□ 0.58
CACNB1-206ENST00000539338 KTN1Q86UP2 1357 aaKnown RBP18.66■□□□□ 0.58
CACNB1-206ENST00000539338 POGZQ7Z3K3 1410 aa18.66■□□□□ 0.58
CACNB1-206ENST00000539338 HSP90AB1P08238 724 aaKnown RBP18.64■□□□□ 0.57
CACNB1-206ENST00000539338 MS4A1P11836 297 aa18.64■□□□□ 0.57
CACNB1-206ENST00000539338 SRPK2P78362 688 aaKnown RBP18.64■□□□□ 0.57
CACNB1-206ENST00000539338 FMN1Q68DA7 1419 aa18.63■□□□□ 0.57
CACNB1-206ENST00000539338 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
CACNB1-206ENST00000539338 KIF3BO15066 747 aa18.63■□□□□ 0.57
CACNB1-206ENST00000539338 DMRT2Q9Y5R5 561 aa18.63■□□□□ 0.57
CACNB1-206ENST00000539338 ERICH6BQ5W0A0 696 aa18.63■□□□□ 0.57
CACNB1-206ENST00000539338 L3MBTL2Q969R5 705 aa18.62■□□□□ 0.57
CACNB1-206ENST00000539338 NUP155O75694 1391 aa18.62■□□□□ 0.57
CACNB1-206ENST00000539338 TSHZ2Q9NRE2 1034 aa18.62■□□□□ 0.57
CACNB1-206ENST00000539338 RCAN3Q9UKA8 241 aa18.62■□□□□ 0.57
CACNB1-206ENST00000539338 ROCK2O75116 1388 aaKnown RBP18.61■□□□□ 0.57
CACNB1-206ENST00000539338 FHOD3Q2V2M9 1422 aa18.61■□□□□ 0.57
CACNB1-206ENST00000539338 DEKP35659 375 aaKnown RBP18.6■□□□□ 0.57
CACNB1-206ENST00000539338 SPRYD3Q8NCJ5 442 aa18.6■□□□□ 0.57
CACNB1-206ENST00000539338 IFT140Q96RY7 1462 aa18.6■□□□□ 0.57
CACNB1-206ENST00000539338 SOX12O15370 315 aa18.6■□□□□ 0.57
CACNB1-206ENST00000539338 CHMP4BQ9H444 224 aaKnown RBP18.59■□□□□ 0.57
CACNB1-206ENST00000539338 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
CACNB1-206ENST00000539338 PAK3O75914 559 aaPredicted RBP18.58■□□□□ 0.56
CACNB1-206ENST00000539338 PNNQ9H307 717 aaKnown RBP18.57■□□□□ 0.56
CACNB1-206ENST00000539338 DNTTIP2Q5QJE6 756 aaKnown RBP18.57■□□□□ 0.56
CACNB1-206ENST00000539338 STK26Q9P289 416 aa18.57■□□□□ 0.56
CACNB1-206ENST00000539338 RALBP1Q15311 655 aa18.56■□□□□ 0.56
CACNB1-206ENST00000539338 NAP1L5Q96NT1 182 aaPredicted RBP18.56■□□□□ 0.56
CACNB1-206ENST00000539338 DHX57Q6P158 1386 aaKnown RBP18.56■□□□□ 0.56
CACNB1-206ENST00000539338 HSCBQ8IWL3 235 aa18.55■□□□□ 0.56
CACNB1-206ENST00000539338 OS9Q13438 667 aaPredicted RBP18.54■□□□□ 0.56
CACNB1-206ENST00000539338 ATF3P18847 181 aa18.54■□□□□ 0.56
CACNB1-206ENST00000539338 PLCB2Q00722 1185 aa18.54■□□□□ 0.56
CACNB1-206ENST00000539338 ZRSR1Q15695 479 aaKnown RBP18.53■□□□□ 0.56
CACNB1-206ENST00000539338 ANKRD30AQ9BXX3 1397 aa18.53■□□□□ 0.56
CACNB1-206ENST00000539338 GAPVD1Q14C86 1478 aa18.53■□□□□ 0.56
CACNB1-206ENST00000539338 TAOK2Q9UL54 1235 aa18.52■□□□□ 0.55
CACNB1-206ENST00000539338 GRIN2BQ13224 1484 aa18.5■□□□□ 0.55
CACNB1-206ENST00000539338 U2AF1L5P0DN76 240 aaPredicted RBP18.5■□□□□ 0.55
CACNB1-206ENST00000539338 U2AF1Q01081 240 aaKnown RBP eCLIP18.5■□□□□ 0.55
CACNB1-206ENST00000539338 HNRNPMP52272 730 aaKnown RBP eCLIP18.5■□□□□ 0.55
CACNB1-206ENST00000539338 APBB1O00213 710 aa18.47■□□□□ 0.55
CACNB1-206ENST00000539338 TCERG1O14776 1098 aaKnown RBP18.47■□□□□ 0.55
CACNB1-206ENST00000539338 KCNJ4P48050 445 aa18.47■□□□□ 0.55
CACNB1-206ENST00000539338 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.47■□□□□ 0.55
CACNB1-206ENST00000539338 EVA1CP58658 441 aa18.47■□□□□ 0.55
CACNB1-206ENST00000539338 FGD1P98174 961 aa18.45■□□□□ 0.54
CACNB1-206ENST00000539338 CCDC146Q8IYE0 955 aa18.45■□□□□ 0.54
CACNB1-206ENST00000539338 ITPRIPQ8IWB1 547 aa18.44■□□□□ 0.54
CACNB1-206ENST00000539338 SLKQ9H2G2 1235 aaPredicted RBP18.44■□□□□ 0.54
CACNB1-206ENST00000539338 CDK11BP21127 795 aaKnown RBP18.43■□□□□ 0.54
CACNB1-206ENST00000539338 NGDNQ8NEJ9 315 aaKnown RBP18.43■□□□□ 0.54
CACNB1-206ENST00000539338 HDGFL2Q7Z4V5 671 aaPredicted RBP18.43■□□□□ 0.54
CACNB1-206ENST00000539338 NLRP13Q86W25 1043 aa18.42■□□□□ 0.54
CACNB1-206ENST00000539338 NAP1L2Q9ULW6 460 aaPredicted RBP18.42■□□□□ 0.54
CACNB1-206ENST00000539338 IPO8O15397 1037 aaKnown RBP18.42■□□□□ 0.54
CACNB1-206ENST00000539338 GOLGA2Q08379 1002 aa18.41■□□□□ 0.54
CACNB1-206ENST00000539338 RWDD1Q9H446 243 aaPredicted RBP18.41■□□□□ 0.54
CACNB1-206ENST00000539338 CCDC18Q5T9S5 1454 aa18.4■□□□□ 0.54
CACNB1-206ENST00000539338 AQRO60306 1485 aaKnown RBP eCLIP18.4■□□□□ 0.54
CACNB1-206ENST00000539338 MSH5O43196 834 aa18.39■□□□□ 0.53
CACNB1-206ENST00000539338 RTF1Q92541 710 aaKnown RBP18.39■□□□□ 0.53
CACNB1-206ENST00000539338 HMGB2P26583 209 aaKnown RBP18.39■□□□□ 0.53
CACNB1-206ENST00000539338 ST20-MTHFSA0A0A6YYL1 179 aa18.39■□□□□ 0.53
CACNB1-206ENST00000539338 L1TD1Q5T7N2 865 aaKnown RBP18.39■□□□□ 0.53
CACNB1-206ENST00000539338 CLUAP1Q96AJ1 413 aa18.39■□□□□ 0.53
CACNB1-206ENST00000539338 IPO9Q96P70 1041 aaKnown RBP18.38■□□□□ 0.53
CACNB1-206ENST00000539338 GZF1Q9H116 711 aaPredicted RBP18.37■□□□□ 0.53
CACNB1-206ENST00000539338 NUTM2DQ5VT03 806 aaPredicted RBP18.37■□□□□ 0.53
CACNB1-206ENST00000539338 THEMISQ8N1K5 641 aaPredicted RBP18.36■□□□□ 0.53
CACNB1-206ENST00000539338 PRG4Q92954 1404 aaPredicted RBP18.36■□□□□ 0.53
CACNB1-206ENST00000539338 MCCP23508 829 aa18.36■□□□□ 0.53
CACNB1-206ENST00000539338 PRKRIP1Q9H875 184 aaPredicted RBP18.35■□□□□ 0.53
CACNB1-206ENST00000539338 EIF3AQ14152 1382 aaKnown RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms