RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 FER1L4A9Z1Z3 1794 aa11.83□□□□□ -0.52
LMO3-220ENST00000539232 ATP1B4Q9UN42 357 aaPredicted RBP11.83□□□□□ -0.52
LMO3-220ENST00000539232 SETD1BQ9UPS6 1966 aaKnown RBP11.82□□□□□ -0.52
LMO3-220ENST00000539232 UBAP1LF5GYI3 381 aa11.81□□□□□ -0.52
LMO3-220ENST00000539232 EFCAB5A4FU69 1503 aa11.81□□□□□ -0.52
LMO3-220ENST00000539232 ABCA9Q8IUA7 1624 aa11.8□□□□□ -0.52
LMO3-220ENST00000539232 CDK13Q14004 1512 aaKnown RBP11.8□□□□□ -0.52
LMO3-220ENST00000539232 RAPGEF6Q8TEU7 1601 aa11.79□□□□□ -0.52
LMO3-220ENST00000539232 UHRF1BP1Q6BDS2 1440 aa11.78□□□□□ -0.52
LMO3-220ENST00000539232 AKNAQ7Z591 1439 aa11.78□□□□□ -0.52
LMO3-220ENST00000539232 PLEKHD1A6NEE1 506 aa11.78□□□□□ -0.52
LMO3-220ENST00000539232 PHF23Q9BUL5 403 aaPredicted RBP11.77□□□□□ -0.53
LMO3-220ENST00000539232 CLIP1P30622 1438 aa11.77□□□□□ -0.53
LMO3-220ENST00000539232 SIGLEC1Q9BZZ2 1709 aa11.76□□□□□ -0.53
LMO3-220ENST00000539232 RICTORQ6R327 1708 aa11.75□□□□□ -0.53
LMO3-220ENST00000539232 MLECQ14165 292 aa11.74□□□□□ -0.53
LMO3-220ENST00000539232 FMN1Q68DA7 1419 aa11.74□□□□□ -0.53
LMO3-220ENST00000539232 DENND4BO75064 1496 aaPredicted RBP11.74□□□□□ -0.53
LMO3-220ENST00000539232 ARHGEF12Q9NZN5 1544 aa11.73□□□□□ -0.53
LMO3-220ENST00000539232 CEBPAP49715 358 aaPredicted RBP11.72□□□□□ -0.53
LMO3-220ENST00000539232 ZMYM4Q5VZL5 1548 aa11.71□□□□□ -0.53
LMO3-220ENST00000539232 ZFYVE16Q7Z3T8 1539 aa11.71□□□□□ -0.53
LMO3-220ENST00000539232 HSPA1LP34931 641 aa11.71□□□□□ -0.53
LMO3-220ENST00000539232 CASKIN1Q8WXD9 1431 aa11.7□□□□□ -0.54
LMO3-220ENST00000539232 MAGI2Q86UL8 1455 aa11.7□□□□□ -0.54
LMO3-220ENST00000539232 CEP162Q5TB80 1403 aa11.69□□□□□ -0.54
LMO3-220ENST00000539232 NCOA1Q15788 1441 aa11.69□□□□□ -0.54
LMO3-220ENST00000539232 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.68□□□□□ -0.54
LMO3-220ENST00000539232 TROQ12816 1431 aaPredicted RBP11.66□□□□□ -0.54
LMO3-220ENST00000539232 ZNF335Q9H4Z2 1342 aaPredicted RBP11.65□□□□□ -0.54
LMO3-220ENST00000539232 SCAF1Q9H7N4 1312 aaKnown RBP11.64□□□□□ -0.55
LMO3-220ENST00000539232 CFAP74Q9C0B2 1584 aa11.64□□□□□ -0.55
LMO3-220ENST00000539232 PLCH2O75038 1416 aa11.64□□□□□ -0.55
LMO3-220ENST00000539232 CDK11AQ9UQ88 783 aaPredicted RBP11.64□□□□□ -0.55
LMO3-220ENST00000539232 HECW1Q76N89 1606 aa11.64□□□□□ -0.55
LMO3-220ENST00000539232 KIF14Q15058 1648 aa11.62□□□□□ -0.55
LMO3-220ENST00000539232 PIP4K2BP78356 416 aa11.62□□□□□ -0.55
LMO3-220ENST00000539232 ATP10AO60312 1499 aa11.62□□□□□ -0.55
LMO3-220ENST00000539232 TOM1O60784 492 aa11.61□□□□□ -0.55
LMO3-220ENST00000539232 FYCO1Q9BQS8 1478 aa11.61□□□□□ -0.55
LMO3-220ENST00000539232 C9orf84Q5VXU9 1444 aa11.6□□□□□ -0.55
LMO3-220ENST00000539232 TRAPPC8Q9Y2L5 1435 aa11.6□□□□□ -0.55
LMO3-220ENST00000539232 EFCAB2Q5VUJ9 269 aa11.6□□□□□ -0.55
LMO3-220ENST00000539232 AFAP1Q8N556 730 aa11.6□□□□□ -0.55
LMO3-220ENST00000539232 SCAPERQ9BY12 1400 aa11.6□□□□□ -0.55
LMO3-220ENST00000539232 C3P01024 1663 aa11.59□□□□□ -0.55
LMO3-220ENST00000539232 CAMSAP1Q5T5Y3 1602 aa11.59□□□□□ -0.55
LMO3-220ENST00000539232 LRRIQ1Q96JM4 1722 aa11.58□□□□□ -0.56
LMO3-220ENST00000539232 KANK4Q5T7N3 995 aaPredicted RBP11.57□□□□□ -0.56
LMO3-220ENST00000539232 RGS17Q9UGC6 210 aaPredicted RBP11.57□□□□□ -0.56
LMO3-220ENST00000539232 ZNF644Q9H582 1327 aaPredicted RBP11.57□□□□□ -0.56
LMO3-220ENST00000539232 CCDC18Q5T9S5 1454 aa11.57□□□□□ -0.56
LMO3-220ENST00000539232 PKD2Q13563 968 aa11.55□□□□□ -0.56
LMO3-220ENST00000539232 ZNF777Q9ULD5 760 aaPredicted RBP11.55□□□□□ -0.56
LMO3-220ENST00000539232 NCKAP5LQ9HCH0 1330 aa11.55□□□□□ -0.56
LMO3-220ENST00000539232 GPATCH8Q9UKJ3 1502 aaKnown RBP11.54□□□□□ -0.56
LMO3-220ENST00000539232 HNRNPMP52272 730 aaKnown RBP eCLIP11.53□□□□□ -0.56
LMO3-220ENST00000539232 MTUS2Q5JR59 1369 aa11.53□□□□□ -0.56
LMO3-220ENST00000539232 VPS8Q8N3P4 1428 aa11.52□□□□□ -0.56
LMO3-220ENST00000539232 ARHGAP5Q13017 1502 aa11.52□□□□□ -0.57
LMO3-220ENST00000539232 PLA2R1Q13018 1463 aa11.51□□□□□ -0.57
LMO3-220ENST00000539232 ESF1Q9H501 851 aaKnown RBP11.51□□□□□ -0.57
LMO3-220ENST00000539232 PTPRKQ15262 1439 aa11.51□□□□□ -0.57
LMO3-220ENST00000539232 CPS1P31327 1500 aa11.5□□□□□ -0.57
LMO3-220ENST00000539232 CFDP1Q9UEE9 299 aaPredicted RBP11.5□□□□□ -0.57
LMO3-220ENST00000539232 CCNB3Q8WWL7 1395 aa11.5□□□□□ -0.57
LMO3-220ENST00000539232 PPP6R1Q9UPN7 881 aa11.49□□□□□ -0.57
LMO3-220ENST00000539232 NPATQ14207 1427 aa11.49□□□□□ -0.57
LMO3-220ENST00000539232 TCOF1Q13428 1488 aaKnown RBP11.49□□□□□ -0.57
LMO3-220ENST00000539232 SUPT6HQ7KZ85 1726 aaKnown RBP11.47□□□□□ -0.57
LMO3-220ENST00000539232 REREQ9P2R6 1566 aa11.47□□□□□ -0.57
LMO3-220ENST00000539232 AGLP35573 1532 aa11.47□□□□□ -0.57
LMO3-220ENST00000539232 CNTLNQ9NXG0 1405 aa11.47□□□□□ -0.57
LMO3-220ENST00000539232 POTEAQ6S8J7 498 aa11.47□□□□□ -0.57
LMO3-220ENST00000539232 ZNF142P52746 1687 aaPredicted RBP11.46□□□□□ -0.58
LMO3-220ENST00000539232 ALKQ9UM73 1620 aa11.46□□□□□ -0.58
LMO3-220ENST00000539232 NCOA2Q15596 1464 aa11.45□□□□□ -0.58
LMO3-220ENST00000539232 MYT1LQ9UL68 1186 aa11.45□□□□□ -0.58
LMO3-220ENST00000539232 ABCC1P33527 1531 aa11.45□□□□□ -0.58
LMO3-220ENST00000539232 LRRC9Q6ZRR7 1453 aa11.44□□□□□ -0.58
LMO3-220ENST00000539232 SAMD9LQ8IVG5 1584 aa11.44□□□□□ -0.58
LMO3-220ENST00000539232 ZNF518AQ6AHZ1 1483 aa11.44□□□□□ -0.58
LMO3-220ENST00000539232 SHANK2Q9UPX8 1470 aa11.44□□□□□ -0.58
LMO3-220ENST00000539232 SETD1AO15047 1707 aaKnown RBP11.43□□□□□ -0.58
LMO3-220ENST00000539232 MBD5Q9P267 1494 aa11.43□□□□□ -0.58
LMO3-220ENST00000539232 MROH2AA6NES4 1674 aa11.43□□□□□ -0.58
LMO3-220ENST00000539232 PREX2Q70Z35 1606 aa11.42□□□□□ -0.58
LMO3-220ENST00000539232 TIAM1Q13009 1591 aa11.42□□□□□ -0.58
LMO3-220ENST00000539232 DIP2CQ9Y2E4 1556 aa11.42□□□□□ -0.58
LMO3-220ENST00000539232 SPAG9O60271 1321 aaKnown RBP11.42□□□□□ -0.58
LMO3-220ENST00000539232 EHBP1L1Q8N3D4 1523 aa11.42□□□□□ -0.58
LMO3-220ENST00000539232 SYCP2Q9BX26 1530 aa11.42□□□□□ -0.58
LMO3-220ENST00000539232 CDC42BPBQ9Y5S2 1711 aa11.42□□□□□ -0.58
LMO3-220ENST00000539232 KDM5CP41229 1560 aa11.41□□□□□ -0.58
LMO3-220ENST00000539232 MYO5CQ9NQX4 1742 aa11.41□□□□□ -0.58
LMO3-220ENST00000539232 MLH3Q9UHC1 1453 aa11.41□□□□□ -0.58
LMO3-220ENST00000539232 KIAA1107Q9UPP5 1409 aa11.41□□□□□ -0.58
LMO3-220ENST00000539232 CEP170BQ9Y4F5 1589 aaPredicted RBP11.41□□□□□ -0.58
LMO3-220ENST00000539232 MYO3AQ8NEV4 1616 aa11.4□□□□□ -0.58
LMO3-220ENST00000539232 PPARGC1BQ86YN6 1023 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms