RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	CASKIN1	Q8WXD9	1431 aa		12.21	□□□□□ -0.45
SNHG1-209	ENST00000538654	CFTR	P13569	1480 aa		12.21	□□□□□ -0.46
SNHG1-209	ENST00000538654	PAK3	O75914	559 aa	Predicted RBP	12.21	□□□□□ -0.46
SNHG1-209	ENST00000538654	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.21	□□□□□ -0.46
SNHG1-209	ENST00000538654	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
SNHG1-209	ENST00000538654	HSPA5	P11021	654 aa	Known RBP	12.2	□□□□□ -0.46
SNHG1-209	ENST00000538654	FGD5	Q6ZNL6	1462 aa		12.2	□□□□□ -0.46
SNHG1-209	ENST00000538654	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.18	□□□□□ -0.46
SNHG1-209	ENST00000538654	FMN1	Q68DA7	1419 aa		12.18	□□□□□ -0.46
SNHG1-209	ENST00000538654	SMG6	Q86US8	1419 aa	Known RBP	12.18	□□□□□ -0.46
SNHG1-209	ENST00000538654	MRS2	Q9HD23	443 aa		12.18	□□□□□ -0.46
SNHG1-209	ENST00000538654	PPP4R3CP	Q6ZMV5	832 aa		12.18	□□□□□ -0.46
SNHG1-209	ENST00000538654	NCAPD3	P42695	1498 aa		12.17	□□□□□ -0.46
SNHG1-209	ENST00000538654	POLR3GL	Q9BT43	218 aa		12.17	□□□□□ -0.46
SNHG1-209	ENST00000538654	FAM9B	Q8IZU0	186 aa		12.17	□□□□□ -0.46
SNHG1-209	ENST00000538654	NAIP	Q13075	1403 aa		12.16	□□□□□ -0.46
SNHG1-209	ENST00000538654	NCOA1	Q15788	1441 aa		12.16	□□□□□ -0.46
SNHG1-209	ENST00000538654	POLR1A	O95602	1720 aa	Predicted RBP	12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	CCDC136	Q96JN2	1154 aa		12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	HECW1	Q76N89	1606 aa		12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	BRD2	P25440	801 aa	Known RBP	12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	USP35	Q9P2H5	1018 aa		12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	CCDC7	Q96M83	1385 aa		12.15	□□□□□ -0.46
SNHG1-209	ENST00000538654	ABCA5	Q8WWZ7	1642 aa		12.14	□□□□□ -0.47
SNHG1-209	ENST00000538654	RNF123	Q5XPI4	1314 aa		12.14	□□□□□ -0.47
SNHG1-209	ENST00000538654	CCDC184	Q52MB2	194 aa		12.13	□□□□□ -0.47
SNHG1-209	ENST00000538654	C1orf115	Q9H7X2	142 aa		12.12	□□□□□ -0.47
SNHG1-209	ENST00000538654	PTPRK	Q15262	1439 aa		12.12	□□□□□ -0.47
SNHG1-209	ENST00000538654	FOXD4L1	Q9NU39	408 aa		12.12	□□□□□ -0.47
SNHG1-209	ENST00000538654	FHOD3	Q2V2M9	1422 aa		12.12	□□□□□ -0.47
SNHG1-209	ENST00000538654	GCC2	Q8IWJ2	1684 aa		12.11	□□□□□ -0.47
SNHG1-209	ENST00000538654	NUDC	Q9Y266	331 aa		12.11	□□□□□ -0.47
SNHG1-209	ENST00000538654	MTUS2	Q5JR59	1369 aa		12.11	□□□□□ -0.47
SNHG1-209	ENST00000538654	CCDC9	Q9Y3X0	531 aa	Known RBP	12.11	□□□□□ -0.47
SNHG1-209	ENST00000538654	MYOM3	Q5VTT5	1437 aa		12.1	□□□□□ -0.47
SNHG1-209	ENST00000538654	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.09	□□□□□ -0.47
SNHG1-209	ENST00000538654	CTTNBP2	Q8WZ74	1663 aa		12.09	□□□□□ -0.47
SNHG1-209	ENST00000538654	P3H3	Q8IVL6	736 aa		12.08	□□□□□ -0.48
SNHG1-209	ENST00000538654	SALL2	Q9Y467	1007 aa	Predicted RBP	12.08	□□□□□ -0.48
SNHG1-209	ENST00000538654	AKNA	Q7Z591	1439 aa		12.08	□□□□□ -0.48
SNHG1-209	ENST00000538654	ARID3C	A6NKF2	412 aa		12.08	□□□□□ -0.48
SNHG1-209	ENST00000538654	THOC2	Q8NI27	1593 aa	Known RBP	12.08	□□□□□ -0.48
SNHG1-209	ENST00000538654	SNAPC4	Q5SXM2	1469 aa		12.07	□□□□□ -0.48
SNHG1-209	ENST00000538654	C11orf95	C9JLR9	678 aa	Predicted RBP	12.07	□□□□□ -0.48
SNHG1-209	ENST00000538654	PPM1G	O15355	546 aa	Predicted RBP	12.07	□□□□□ -0.48
SNHG1-209	ENST00000538654	PKD2	Q13563	968 aa		12.06	□□□□□ -0.48
SNHG1-209	ENST00000538654	CC2D2A	Q9P2K1	1620 aa		12.06	□□□□□ -0.48
SNHG1-209	ENST00000538654	EHBP1L1	Q8N3D4	1523 aa		12.05	□□□□□ -0.48
SNHG1-209	ENST00000538654	CUL7	Q14999	1698 aa		12.05	□□□□□ -0.48
SNHG1-209	ENST00000538654	TCERG1	O14776	1098 aa	Known RBP	12.05	□□□□□ -0.48
SNHG1-209	ENST00000538654	IL27	Q8NEV9	243 aa		12.04	□□□□□ -0.48
SNHG1-209	ENST00000538654	WASHC2C	Q9Y4E1	1318 aa		12.03	□□□□□ -0.48
SNHG1-209	ENST00000538654	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.03	□□□□□ -0.48
SNHG1-209	ENST00000538654	NEFM	P07197	916 aa		12.03	□□□□□ -0.48
SNHG1-209	ENST00000538654	DENND4B	O75064	1496 aa	Predicted RBP	12.02	□□□□□ -0.48
SNHG1-209	ENST00000538654	TCOF1	Q13428	1488 aa	Known RBP	12.02	□□□□□ -0.48
SNHG1-209	ENST00000538654	KIF7	Q2M1P5	1343 aa		12.02	□□□□□ -0.49
SNHG1-209	ENST00000538654	MS4A1	P11836	297 aa		12.02	□□□□□ -0.49
SNHG1-209	ENST00000538654	L3MBTL2	Q969R5	705 aa		12.02	□□□□□ -0.49
SNHG1-209	ENST00000538654	SPATA31E1	Q6ZUB1	1445 aa		12.02	□□□□□ -0.49
SNHG1-209	ENST00000538654	TAF7L	Q5H9L4	462 aa		12.01	□□□□□ -0.49
SNHG1-209	ENST00000538654	UGGT2	Q9NYU1	1516 aa		12.01	□□□□□ -0.49
SNHG1-209	ENST00000538654	HSP90B1	P14625	803 aa	Known RBP	12.01	□□□□□ -0.49
SNHG1-209	ENST00000538654	MIA2	Q96PC5	1412 aa		12	□□□□□ -0.49
SNHG1-209	ENST00000538654	LRRIQ1	Q96JM4	1722 aa		12	□□□□□ -0.49
SNHG1-209	ENST00000538654	RPRD2	Q5VT52	1461 aa	Known RBP	12	□□□□□ -0.49
SNHG1-209	ENST00000538654	ARHGEF11	O15085	1522 aa		12	□□□□□ -0.49
SNHG1-209	ENST00000538654	MPHOSPH9	Q99550	1183 aa		12	□□□□□ -0.49
SNHG1-209	ENST00000538654	KIF21A	Q7Z4S6	1674 aa		11.99	□□□□□ -0.49
SNHG1-209	ENST00000538654	BRPF1	P55201	1214 aa	Predicted RBP	11.99	□□□□□ -0.49
SNHG1-209	ENST00000538654	SAMD9	Q5K651	1589 aa		11.99	□□□□□ -0.49
SNHG1-209	ENST00000538654	DDRGK1	Q96HY6	314 aa		11.99	□□□□□ -0.49
SNHG1-209	ENST00000538654	GRIN2B	Q13224	1484 aa		11.99	□□□□□ -0.49
SNHG1-209	ENST00000538654	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.98	□□□□□ -0.49
SNHG1-209	ENST00000538654	TEX14	Q8IWB6	1497 aa		11.97	□□□□□ -0.49
SNHG1-209	ENST00000538654	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.97	□□□□□ -0.49
SNHG1-209	ENST00000538654	DHX29	Q7Z478	1369 aa	Known RBP	11.97	□□□□□ -0.49
SNHG1-209	ENST00000538654	ABCA10	Q8WWZ4	1543 aa		11.97	□□□□□ -0.49
SNHG1-209	ENST00000538654	RRP7BP	Q9NSQ0	103 aa		11.97	□□□□□ -0.49
SNHG1-209	ENST00000538654	CADPS	Q9ULU8	1353 aa		11.97	□□□□□ -0.49
SNHG1-209	ENST00000538654	PDE4A	P27815	886 aa		11.96	□□□□□ -0.49
SNHG1-209	ENST00000538654	BACH2	Q9BYV9	841 aa		11.96	□□□□□ -0.49
SNHG1-209	ENST00000538654	LAS1L	Q9Y4W2	734 aa	Known RBP	11.95	□□□□□ -0.5
SNHG1-209	ENST00000538654	ANKRD30B	Q9BXX2	1392 aa		11.95	□□□□□ -0.5
SNHG1-209	ENST00000538654	PKNOX2	Q96KN3	472 aa		11.95	□□□□□ -0.5
SNHG1-209	ENST00000538654	ROCK2	O75116	1388 aa	Known RBP	11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	RRP1	P56182	461 aa	Known RBP	11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	KDM6B	O15054	1643 aa		11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654		A0A0U1RQG5	324 aa	Predicted RBP	11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	NBPF8	Q3BBV2	869 aa		11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	PNISR	Q8TF01	805 aa	Known RBP	11.94	□□□□□ -0.5
SNHG1-209	ENST00000538654	KTN1	Q86UP2	1357 aa	Known RBP	11.93	□□□□□ -0.5
SNHG1-209	ENST00000538654	GSE1	Q14687	1217 aa		11.93	□□□□□ -0.5
SNHG1-209	ENST00000538654	TMC1	Q8TDI8	760 aa		11.92	□□□□□ -0.5
SNHG1-209	ENST00000538654	DNMBP	Q6XZF7	1577 aa		11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms