RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 PTMAP06454 111 aaKnown RBP6.99□□□□□ -1.29
PTPRD-213ENST00000537002 WDR43Q15061 677 aaKnown RBP eCLIP6.99□□□□□ -1.29
PTPRD-213ENST00000537002 SPRYD3Q8NCJ5 442 aa6.99□□□□□ -1.29
PTPRD-213ENST00000537002 CDK11BP21127 795 aaKnown RBP6.98□□□□□ -1.29
PTPRD-213ENST00000537002 NCOA2Q15596 1464 aa6.98□□□□□ -1.29
PTPRD-213ENST00000537002 MAP7D2Q96T17 732 aa6.98□□□□□ -1.29
PTPRD-213ENST00000537002 UACAQ9BZF9 1416 aa6.98□□□□□ -1.29
PTPRD-213ENST00000537002 HSP90AA2PQ14568 343 aaPredicted RBP6.98□□□□□ -1.29
PTPRD-213ENST00000537002 PEG3Q9GZU2 1588 aa6.98□□□□□ -1.29
PTPRD-213ENST00000537002 ESF1Q9H501 851 aaKnown RBP6.97□□□□□ -1.29
PTPRD-213ENST00000537002 GOLGA6L22H0YM25 854 aa6.97□□□□□ -1.29
PTPRD-213ENST00000537002 ARAP1Q96P48 1450 aa6.97□□□□□ -1.29
PTPRD-213ENST00000537002 GZF1Q9H116 711 aaPredicted RBP6.96□□□□□ -1.29
PTPRD-213ENST00000537002 ZNF777Q9ULD5 760 aaPredicted RBP6.96□□□□□ -1.29
PTPRD-213ENST00000537002 ZBTB7CA1YPR0 619 aa6.96□□□□□ -1.29
PTPRD-213ENST00000537002 TIAM1Q13009 1591 aa6.96□□□□□ -1.29
PTPRD-213ENST00000537002 MTERF4Q7Z6M4 381 aaKnown RBP6.96□□□□□ -1.29
PTPRD-213ENST00000537002 TOP2BQ02880 1626 aa6.96□□□□□ -1.3
PTPRD-213ENST00000537002 HMGXB3Q12766 1538 aa6.96□□□□□ -1.3
PTPRD-213ENST00000537002 ARHGAP35Q9NRY4 1499 aa6.96□□□□□ -1.3
PTPRD-213ENST00000537002 FANCD2Q9BXW9 1451 aa6.95□□□□□ -1.3
PTPRD-213ENST00000537002 INSRP06213 1382 aa6.95□□□□□ -1.3
PTPRD-213ENST00000537002 PHLDB1Q86UU1 1377 aa6.95□□□□□ -1.3
PTPRD-213ENST00000537002 PTMSP20962 102 aa6.95□□□□□ -1.3
PTPRD-213ENST00000537002 PAK3O75914 559 aaPredicted RBP6.95□□□□□ -1.3
PTPRD-213ENST00000537002 SLC4A3P48751 1232 aa6.95□□□□□ -1.3
PTPRD-213ENST00000537002 TPRNQ4KMQ1 711 aa6.95□□□□□ -1.3
PTPRD-213ENST00000537002 SLKQ9H2G2 1235 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-213ENST00000537002 PRKRIP1Q9H875 184 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-213ENST00000537002 RUSC2Q8N2Y8 1516 aa6.94□□□□□ -1.3
PTPRD-213ENST00000537002 FMN1Q68DA7 1419 aa6.94□□□□□ -1.3
PTPRD-213ENST00000537002 MRC2Q9UBG0 1479 aa6.94□□□□□ -1.3
PTPRD-213ENST00000537002 MSNP26038 577 aaKnown RBP6.94□□□□□ -1.3
PTPRD-213ENST00000537002 KDM2AQ9Y2K7 1162 aa6.94□□□□□ -1.3
PTPRD-213ENST00000537002 RRP7BPQ9NSQ0 103 aa6.94□□□□□ -1.3
PTPRD-213ENST00000537002 TPM2P07951 284 aa6.94□□□□□ -1.3
PTPRD-213ENST00000537002 PDE4AP27815 886 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 HFM1A2PYH4 1435 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 BICRAQ9NZM4 1560 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 GOLGA6L3A6NEY3 463 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 AKNAQ7Z591 1439 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 CENPJQ9HC77 1338 aaPredicted RBP6.93□□□□□ -1.3
PTPRD-213ENST00000537002 BACH2Q9BYV9 841 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 LRRC9Q6ZRR7 1453 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 BRPF3Q9ULD4 1205 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 CCDC144AA2RUR9 1427 aa6.93□□□□□ -1.3
PTPRD-213ENST00000537002 ZMYM4Q5VZL5 1548 aa6.92□□□□□ -1.3
PTPRD-213ENST00000537002 CUX1P39880 1505 aa6.92□□□□□ -1.3
PTPRD-213ENST00000537002 MIA2Q96PC5 1412 aa6.92□□□□□ -1.3
PTPRD-213ENST00000537002 HSPA5P11021 654 aaKnown RBP6.92□□□□□ -1.3
PTPRD-213ENST00000537002 AQRO60306 1485 aaKnown RBP eCLIP6.91□□□□□ -1.3
PTPRD-213ENST00000537002 A0A0U1RQG5 324 aaPredicted RBP6.91□□□□□ -1.3
PTPRD-213ENST00000537002 BIVM-ERCC5R4GMW8 1640 aa6.91□□□□□ -1.3
PTPRD-213ENST00000537002 NFKBIBQ15653 356 aa6.91□□□□□ -1.3
PTPRD-213ENST00000537002 PLEKHH2Q8IVE3 1493 aa6.9□□□□□ -1.3
PTPRD-213ENST00000537002 CLCN1P35523 988 aa6.9□□□□□ -1.31
PTPRD-213ENST00000537002 PODXL2Q9NZ53 605 aa6.9□□□□□ -1.31
PTPRD-213ENST00000537002 HSP90AB1P08238 724 aaKnown RBP6.9□□□□□ -1.31
PTPRD-213ENST00000537002 ABCA5Q8WWZ7 1642 aa6.9□□□□□ -1.31
PTPRD-213ENST00000537002 AAMPQ13685 434 aa6.9□□□□□ -1.31
PTPRD-213ENST00000537002 KANK4Q5T7N3 995 aaPredicted RBP6.9□□□□□ -1.31
PTPRD-213ENST00000537002 AEBP2Q6ZN18 517 aaPredicted RBP6.9□□□□□ -1.31
PTPRD-213ENST00000537002 EFCAB5A4FU69 1503 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 TERF1P54274 439 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 NCOA1Q15788 1441 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 CCDC7Q96M83 1385 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 PLCB2Q00722 1185 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 EIF3AQ14152 1382 aaKnown RBP6.89□□□□□ -1.31
PTPRD-213ENST00000537002 CARMIL2Q6F5E8 1435 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 FYCO1Q9BQS8 1478 aa6.89□□□□□ -1.31
PTPRD-213ENST00000537002 RALBP1Q15311 655 aa6.88□□□□□ -1.31
PTPRD-213ENST00000537002 HSCBQ8IWL3 235 aa6.88□□□□□ -1.31
PTPRD-213ENST00000537002 FRAT1Q92837 279 aaPredicted RBP6.88□□□□□ -1.31
PTPRD-213ENST00000537002 PDCL3Q9H2J4 239 aa6.88□□□□□ -1.31
PTPRD-213ENST00000537002 CFAP43Q8NDM7 1665 aa6.88□□□□□ -1.31
PTPRD-213ENST00000537002 IFT140Q96RY7 1462 aa6.88□□□□□ -1.31
PTPRD-213ENST00000537002 ZMYM3Q14202 1370 aa6.88□□□□□ -1.31
PTPRD-213ENST00000537002 TDRD9Q8NDG6 1382 aaKnown RBP6.88□□□□□ -1.31
PTPRD-213ENST00000537002 RCAN3Q9UKA8 241 aa6.87□□□□□ -1.31
PTPRD-213ENST00000537002 BRD4O60885 1362 aaPredicted RBP6.87□□□□□ -1.31
PTPRD-213ENST00000537002 FAM161AQ3B820 660 aa6.87□□□□□ -1.31
PTPRD-213ENST00000537002 CENPQQ7L2Z9 268 aaPredicted RBP6.87□□□□□ -1.31
PTPRD-213ENST00000537002 RRP1P56182 461 aaKnown RBP6.87□□□□□ -1.31
PTPRD-213ENST00000537002 CALD1Q05682 793 aaKnown RBP6.87□□□□□ -1.31
PTPRD-213ENST00000537002 ZMYND15Q9H091 742 aa6.87□□□□□ -1.31
PTPRD-213ENST00000537002 MTUS2Q5JR59 1369 aa6.86□□□□□ -1.31
PTPRD-213ENST00000537002 CC2D1BQ5T0F9 858 aaKnown RBP6.86□□□□□ -1.31
PTPRD-213ENST00000537002 NGEFQ8N5V2 710 aa6.86□□□□□ -1.31
PTPRD-213ENST00000537002 CYB5RLQ6IPT4 315 aa6.86□□□□□ -1.31
PTPRD-213ENST00000537002 MYH16Q9H6N6 1097 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 MRE11P49959 708 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 CARD11Q9BXL7 1154 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 NEUROD2Q15784 382 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 EXOC6Q8TAG9 804 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 FGD6Q6ZV73 1430 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 PLEKHD1A6NEE1 506 aa6.85□□□□□ -1.31
PTPRD-213ENST00000537002 MAPK8IP3Q9UPT6 1336 aa6.84□□□□□ -1.31
PTPRD-213ENST00000537002 THOC2Q8NI27 1593 aaKnown RBP6.84□□□□□ -1.31
PTPRD-213ENST00000537002 CASKIN1Q8WXD9 1431 aa6.84□□□□□ -1.32
PTPRD-213ENST00000537002 KIF15Q9NS87 1388 aa6.84□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms