RNA–Protein interactions for RNA: ENST00000536548.5

CPSF7-216, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-216ENST00000536548 PTPRTO14522 1441 aa11.66□□□□□ -0.54
CPSF7-216ENST00000536548 AKNAQ7Z591 1439 aa11.66□□□□□ -0.54
CPSF7-216ENST00000536548 MED1Q15648 1581 aaPredicted RBP11.66□□□□□ -0.54
CPSF7-216ENST00000536548 DENND4BO75064 1496 aaPredicted RBP11.65□□□□□ -0.54
CPSF7-216ENST00000536548 RAPGEF2Q9Y4G8 1499 aa11.65□□□□□ -0.54
CPSF7-216ENST00000536548 UBAP1LF5GYI3 381 aa11.65□□□□□ -0.54
CPSF7-216ENST00000536548 IQSEC2Q5JU85 1478 aa11.64□□□□□ -0.55
CPSF7-216ENST00000536548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.64□□□□□ -0.55
CPSF7-216ENST00000536548 GTF3C3Q9Y5Q9 886 aa11.64□□□□□ -0.55
CPSF7-216ENST00000536548 UHRF1BP1Q6BDS2 1440 aa11.63□□□□□ -0.55
CPSF7-216ENST00000536548 ZFYVE16Q7Z3T8 1539 aa11.63□□□□□ -0.55
CPSF7-216ENST00000536548 FHOD3Q2V2M9 1422 aa11.62□□□□□ -0.55
CPSF7-216ENST00000536548 ARHGEF12Q9NZN5 1544 aa11.62□□□□□ -0.55
CPSF7-216ENST00000536548 CTTNBP2Q8WZ74 1663 aa11.62□□□□□ -0.55
CPSF7-216ENST00000536548 GOLGA3Q08378 1498 aa11.61□□□□□ -0.55
CPSF7-216ENST00000536548 SETD1BQ9UPS6 1966 aaKnown RBP11.61□□□□□ -0.55
CPSF7-216ENST00000536548 ZMYM4Q5VZL5 1548 aa11.6□□□□□ -0.55
CPSF7-216ENST00000536548 HSPA1LP34931 641 aa11.6□□□□□ -0.55
CPSF7-216ENST00000536548 P3H3Q8IVL6 736 aa11.6□□□□□ -0.55
CPSF7-216ENST00000536548 EFCAB5A4FU69 1503 aa11.6□□□□□ -0.55
CPSF7-216ENST00000536548 EEA1Q15075 1411 aa11.6□□□□□ -0.55
CPSF7-216ENST00000536548 HNRNPUL2Q1KMD3 747 aaKnown RBP11.59□□□□□ -0.55
CPSF7-216ENST00000536548 HECW1Q76N89 1606 aa11.59□□□□□ -0.55
CPSF7-216ENST00000536548 ZNF335Q9H4Z2 1342 aaPredicted RBP11.59□□□□□ -0.55
CPSF7-216ENST00000536548 ZNF316A6NFI3 1004 aaPredicted RBP11.57□□□□□ -0.56
CPSF7-216ENST00000536548 EHMT2Q96KQ7 1210 aa11.56□□□□□ -0.56
CPSF7-216ENST00000536548 PHF23Q9BUL5 403 aaPredicted RBP11.56□□□□□ -0.56
CPSF7-216ENST00000536548 PIP4K2BP78356 416 aa11.55□□□□□ -0.56
CPSF7-216ENST00000536548 MAGI2Q86UL8 1455 aa11.55□□□□□ -0.56
CPSF7-216ENST00000536548 C3P01024 1663 aa11.55□□□□□ -0.56
CPSF7-216ENST00000536548 NCOA1Q15788 1441 aa11.54□□□□□ -0.56
CPSF7-216ENST00000536548 CEP162Q5TB80 1403 aa11.54□□□□□ -0.56
CPSF7-216ENST00000536548 SRCAPQ6ZRS2 3230 aa11.54□□□□□ -0.56
CPSF7-216ENST00000536548 ATP10AO60312 1499 aa11.53□□□□□ -0.56
CPSF7-216ENST00000536548 CFAP74Q9C0B2 1584 aa11.53□□□□□ -0.56
CPSF7-216ENST00000536548 NCKAP5LQ9HCH0 1330 aa11.52□□□□□ -0.57
CPSF7-216ENST00000536548 C9orf84Q5VXU9 1444 aa11.51□□□□□ -0.57
CPSF7-216ENST00000536548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.5□□□□□ -0.57
CPSF7-216ENST00000536548 CAMSAP1Q5T5Y3 1602 aa11.5□□□□□ -0.57
CPSF7-216ENST00000536548 RAPGEF6Q8TEU7 1601 aa11.5□□□□□ -0.57
CPSF7-216ENST00000536548 SCAPERQ9BY12 1400 aa11.5□□□□□ -0.57
CPSF7-216ENST00000536548 CLSPNQ9HAW4 1339 aa11.49□□□□□ -0.57
CPSF7-216ENST00000536548 NUP153P49790 1475 aaKnown RBP11.47□□□□□ -0.57
CPSF7-216ENST00000536548 TRAPPC8Q9Y2L5 1435 aa11.47□□□□□ -0.57
CPSF7-216ENST00000536548 SENP3Q9H4L4 574 aaPredicted RBP11.47□□□□□ -0.57
CPSF7-216ENST00000536548 PLEKHD1A6NEE1 506 aa11.46□□□□□ -0.57
CPSF7-216ENST00000536548 RGS17Q9UGC6 210 aaPredicted RBP11.46□□□□□ -0.57
CPSF7-216ENST00000536548 TOM1O60784 492 aa11.42□□□□□ -0.58
CPSF7-216ENST00000536548 AFAP1Q8N556 730 aa11.41□□□□□ -0.58
CPSF7-216ENST00000536548 CSRNP3Q8WYN3 585 aa11.41□□□□□ -0.58
CPSF7-216ENST00000536548 ESF1Q9H501 851 aaKnown RBP11.41□□□□□ -0.58
CPSF7-216ENST00000536548 MYT1LQ9UL68 1186 aa11.41□□□□□ -0.58
CPSF7-216ENST00000536548 SAMD9Q5K651 1589 aa11.4□□□□□ -0.58
CPSF7-216ENST00000536548 DIP2CQ9Y2E4 1556 aa11.4□□□□□ -0.58
CPSF7-216ENST00000536548 SUPT6HQ7KZ85 1726 aaKnown RBP11.4□□□□□ -0.58
CPSF7-216ENST00000536548 PLCH2O75038 1416 aa11.39□□□□□ -0.59
CPSF7-216ENST00000536548 ALKQ9UM73 1620 aa11.38□□□□□ -0.59
CPSF7-216ENST00000536548 PPP6R1Q9UPN7 881 aa11.38□□□□□ -0.59
CPSF7-216ENST00000536548 ABCA6Q8N139 1617 aa11.38□□□□□ -0.59
CPSF7-216ENST00000536548 RANGAP1P46060 587 aaPredicted RBP11.37□□□□□ -0.59
CPSF7-216ENST00000536548 PKD2Q13563 968 aa11.37□□□□□ -0.59
CPSF7-216ENST00000536548 TCOF1Q13428 1488 aaKnown RBP11.37□□□□□ -0.59
CPSF7-216ENST00000536548 UBTFP17480 764 aaKnown RBP11.36□□□□□ -0.59
CPSF7-216ENST00000536548 PRXQ9BXM0 1461 aa11.36□□□□□ -0.59
CPSF7-216ENST00000536548 EFCAB2Q5VUJ9 269 aa11.35□□□□□ -0.59
CPSF7-216ENST00000536548 POTEAQ6S8J7 498 aa11.35□□□□□ -0.59
CPSF7-216ENST00000536548 ZNF518AQ6AHZ1 1483 aa11.35□□□□□ -0.59
CPSF7-216ENST00000536548 KDM5CP41229 1560 aa11.35□□□□□ -0.59
CPSF7-216ENST00000536548 REREQ9P2R6 1566 aa11.35□□□□□ -0.59
CPSF7-216ENST00000536548 SETD1AO15047 1707 aaKnown RBP11.35□□□□□ -0.59
CPSF7-216ENST00000536548 AGLP35573 1532 aa11.35□□□□□ -0.59
CPSF7-216ENST00000536548 PLA2R1Q13018 1463 aa11.34□□□□□ -0.59
CPSF7-216ENST00000536548 MYO5CQ9NQX4 1742 aa11.34□□□□□ -0.59
CPSF7-216ENST00000536548 MYO3AQ8NEV4 1616 aa11.34□□□□□ -0.59
CPSF7-216ENST00000536548 NPATQ14207 1427 aa11.34□□□□□ -0.59
CPSF7-216ENST00000536548 ZMYM3Q14202 1370 aa11.33□□□□□ -0.6
CPSF7-216ENST00000536548 MIER1Q8N108 512 aa11.33□□□□□ -0.6
CPSF7-216ENST00000536548 YTHDC1Q96MU7 727 aaKnown RBP11.33□□□□□ -0.6
CPSF7-216ENST00000536548 CDK13Q14004 1512 aaKnown RBP11.33□□□□□ -0.6
CPSF7-216ENST00000536548 ZNF142P52746 1687 aaPredicted RBP11.33□□□□□ -0.6
CPSF7-216ENST00000536548 CEP170BQ9Y4F5 1589 aaPredicted RBP11.33□□□□□ -0.6
CPSF7-216ENST00000536548 CNTLNQ9NXG0 1405 aa11.32□□□□□ -0.6
CPSF7-216ENST00000536548 SHANK2Q9UPX8 1470 aa11.32□□□□□ -0.6
CPSF7-216ENST00000536548 CPS1P31327 1500 aa11.31□□□□□ -0.6
CPSF7-216ENST00000536548 MROH2AA6NES4 1674 aa11.3□□□□□ -0.6
CPSF7-216ENST00000536548 PTPRKQ15262 1439 aa11.3□□□□□ -0.6
CPSF7-216ENST00000536548 VPS8Q8N3P4 1428 aa11.29□□□□□ -0.6
CPSF7-216ENST00000536548 CLTCQ00610 1675 aaKnown RBP11.29□□□□□ -0.6
CPSF7-216ENST00000536548 KIF14Q15058 1648 aa11.28□□□□□ -0.6
CPSF7-216ENST00000536548 CLIP1P30622 1438 aa11.28□□□□□ -0.6
CPSF7-216ENST00000536548 MLH3Q9UHC1 1453 aa11.28□□□□□ -0.6
CPSF7-216ENST00000536548 APLP2Q06481 763 aa11.28□□□□□ -0.6
CPSF7-216ENST00000536548 ARHGAP5Q13017 1502 aa11.28□□□□□ -0.6
CPSF7-216ENST00000536548 POLR1AO95602 1720 aaPredicted RBP11.27□□□□□ -0.61
CPSF7-216ENST00000536548 NEURL4Q96JN8 1562 aa11.27□□□□□ -0.61
CPSF7-216ENST00000536548 KIDINS220Q9ULH0 1771 aa11.26□□□□□ -0.61
CPSF7-216ENST00000536548 DNMT1P26358 1616 aaKnown RBP11.26□□□□□ -0.61
CPSF7-216ENST00000536548 VWDEQ8N2E2 1590 aa11.25□□□□□ -0.61
CPSF7-216ENST00000536548 CDC42BPBQ9Y5S2 1711 aa11.23□□□□□ -0.61
CPSF7-216ENST00000536548 STRCP1A6NGW2 1772 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms