RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 KCNH8Q96L42 1107 aa5.43□□□□□ -1.54
MCF2-210ENST00000536274 STAG3Q9UJ98 1225 aa5.43□□□□□ -1.54
MCF2-210ENST00000536274 ERCC6L2Q5T890 1561 aa5.43□□□□□ -1.54
MCF2-210ENST00000536274 ADCY10Q96PN6 1610 aa5.42□□□□□ -1.54
MCF2-210ENST00000536274 PPRC1Q5VV67 1664 aaKnown RBP5.41□□□□□ -1.54
MCF2-210ENST00000536274 MAP3K4Q9Y6R4 1608 aa5.41□□□□□ -1.54
MCF2-210ENST00000536274 PKNOX2Q96KN3 472 aa5.41□□□□□ -1.54
MCF2-210ENST00000536274 SSUH2Q9Y2M2 353 aa5.4□□□□□ -1.54
MCF2-210ENST00000536274 KDM6BO15054 1643 aa5.4□□□□□ -1.54
MCF2-210ENST00000536274 TDRD9Q8NDG6 1382 aaKnown RBP5.39□□□□□ -1.55
MCF2-210ENST00000536274 CFAP43Q8NDM7 1665 aa5.39□□□□□ -1.55
MCF2-210ENST00000536274 CHMP7Q8WUX9 453 aaPredicted RBP5.38□□□□□ -1.55
MCF2-210ENST00000536274 PLB1Q6P1J6 1458 aa5.38□□□□□ -1.55
MCF2-210ENST00000536274 CYB5RLQ6IPT4 315 aa5.38□□□□□ -1.55
MCF2-210ENST00000536274 TIMELESSQ9UNS1 1208 aa5.38□□□□□ -1.55
MCF2-210ENST00000536274 PODXL2Q9NZ53 605 aa5.37□□□□□ -1.55
MCF2-210ENST00000536274 TEX14Q8IWB6 1497 aa5.37□□□□□ -1.55
MCF2-210ENST00000536274 UGGT2Q9NYU1 1516 aa5.37□□□□□ -1.55
MCF2-210ENST00000536274 ABCC2Q92887 1545 aa5.36□□□□□ -1.55
MCF2-210ENST00000536274 IRX6P78412 446 aaPredicted RBP5.35□□□□□ -1.55
MCF2-210ENST00000536274 KDM5BQ9UGL1 1544 aa5.35□□□□□ -1.55
MCF2-210ENST00000536274 FXR2P51116 673 aaKnown RBP eCLIP5.35□□□□□ -1.55
MCF2-210ENST00000536274 CLCN6P51797 869 aa5.35□□□□□ -1.55
MCF2-210ENST00000536274 IQGAP2Q13576 1575 aa5.34□□□□□ -1.55
MCF2-210ENST00000536274 PITPNM1O00562 1244 aa5.34□□□□□ -1.55
MCF2-210ENST00000536274 PRG4Q92954 1404 aaPredicted RBP5.34□□□□□ -1.55
MCF2-210ENST00000536274 MAGI3Q5TCQ9 1506 aa5.34□□□□□ -1.55
MCF2-210ENST00000536274 PHLDB1Q86UU1 1377 aa5.34□□□□□ -1.55
MCF2-210ENST00000536274 CTTNBP2Q8WZ74 1663 aa5.33□□□□□ -1.56
MCF2-210ENST00000536274 PAK3O75914 559 aaPredicted RBP5.33□□□□□ -1.56
MCF2-210ENST00000536274 MKRN4PQ13434 485 aaPredicted RBP5.32□□□□□ -1.56
MCF2-210ENST00000536274 CARMIL2Q6F5E8 1435 aa5.32□□□□□ -1.56
MCF2-210ENST00000536274 KIAA0556O60303 1618 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 PRR29P0C7W0 189 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 ZCCHC11Q5TAX3 1644 aaKnown RBP5.31□□□□□ -1.56
MCF2-210ENST00000536274 CFAP74Q9C0B2 1584 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 PLCB2Q00722 1185 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 PIP4P2Q8N4L2 257 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 KIF27Q86VH2 1401 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 TNIKQ9UKE5 1360 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 A0A0U1RQG5 324 aaPredicted RBP5.31□□□□□ -1.56
MCF2-210ENST00000536274 CLEC11AQ9Y240 323 aa5.31□□□□□ -1.56
MCF2-210ENST00000536274 TAOK2Q9UL54 1235 aa5.3□□□□□ -1.56
MCF2-210ENST00000536274 ARAP3Q8WWN8 1544 aa5.3□□□□□ -1.56
MCF2-210ENST00000536274 EPRSP07814 1512 aaKnown RBP5.29□□□□□ -1.56
MCF2-210ENST00000536274 ABCA8O94911 1581 aa5.29□□□□□ -1.56
MCF2-210ENST00000536274 TRIM52Q96A61 297 aa5.29□□□□□ -1.56
MCF2-210ENST00000536274 GOLGA3Q08378 1498 aa5.29□□□□□ -1.56
MCF2-210ENST00000536274 ABCA9Q8IUA7 1624 aa5.28□□□□□ -1.56
MCF2-210ENST00000536274 ADAMTSL3P82987 1691 aa5.28□□□□□ -1.56
MCF2-210ENST00000536274 DISP1Q96F81 1524 aa5.28□□□□□ -1.56
MCF2-210ENST00000536274 UACAQ9BZF9 1416 aa5.28□□□□□ -1.56
MCF2-210ENST00000536274 SPDYE4A6NLX3 237 aa5.27□□□□□ -1.57
MCF2-210ENST00000536274 C11orf95C9JLR9 678 aaPredicted RBP5.27□□□□□ -1.57
MCF2-210ENST00000536274 VSIG10Q8N0Z9 540 aa5.27□□□□□ -1.57
MCF2-210ENST00000536274 BRPF3Q9ULD4 1205 aa5.27□□□□□ -1.57
MCF2-210ENST00000536274 ERICH6BQ5W0A0 696 aa5.27□□□□□ -1.57
MCF2-210ENST00000536274 JPH4Q96JJ6 628 aa5.27□□□□□ -1.57
MCF2-210ENST00000536274 ADGRL1O94910 1474 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 WDR7Q9Y4E6 1490 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 ZMYND15Q9H091 742 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 ZMYM4Q5VZL5 1548 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 CLSPNQ9HAW4 1339 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 FANCIQ9NVI1 1328 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 IGF1RP08069 1367 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 ASXL2Q76L83 1435 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 NEO1Q92859 1461 aa5.26□□□□□ -1.57
MCF2-210ENST00000536274 HECW2Q9P2P5 1572 aa5.25□□□□□ -1.57
MCF2-210ENST00000536274 HAX1O00165 279 aa5.25□□□□□ -1.57
MCF2-210ENST00000536274 NEFLP07196 543 aa5.25□□□□□ -1.57
MCF2-210ENST00000536274 PRKAR2AP13861 404 aaKnown RBP5.25□□□□□ -1.57
MCF2-210ENST00000536274 NPM1P06748 294 aaKnown RBP eCLIP5.25□□□□□ -1.57
MCF2-210ENST00000536274 DAXXQ9UER7 740 aaPredicted RBP5.25□□□□□ -1.57
MCF2-210ENST00000536274 SAMD9Q5K651 1589 aa5.25□□□□□ -1.57
MCF2-210ENST00000536274 SP7Q8TDD2 431 aaPredicted RBP5.24□□□□□ -1.57
MCF2-210ENST00000536274 PTPRGP23470 1445 aa5.24□□□□□ -1.57
MCF2-210ENST00000536274 REREQ9P2R6 1566 aa5.24□□□□□ -1.57
MCF2-210ENST00000536274 BCORL1Q5H9F3 1711 aa5.24□□□□□ -1.57
MCF2-210ENST00000536274 ARHGEF40Q8TER5 1519 aa5.24□□□□□ -1.57
MCF2-210ENST00000536274 RAPGEF2Q9Y4G8 1499 aa5.24□□□□□ -1.57
MCF2-210ENST00000536274 TSPOAP1O95153 1857 aa5.23□□□□□ -1.57
MCF2-210ENST00000536274 IQSEC2Q5JU85 1478 aa5.23□□□□□ -1.57
MCF2-210ENST00000536274 CDK11AQ9UQ88 783 aaPredicted RBP5.23□□□□□ -1.57
MCF2-210ENST00000536274 NOP58Q9Y2X3 529 aaKnown RBP5.23□□□□□ -1.57
MCF2-210ENST00000536274 MAGI2Q86UL8 1455 aa5.22□□□□□ -1.57
MCF2-210ENST00000536274 RTL5Q5HYW3 569 aaPredicted RBP5.21□□□□□ -1.57
MCF2-210ENST00000536274 LAS1LQ9Y4W2 734 aaKnown RBP5.21□□□□□ -1.57
MCF2-210ENST00000536274 CARMIL1Q5VZK9 1371 aa5.21□□□□□ -1.58
MCF2-210ENST00000536274 RICTORQ6R327 1708 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 FRMPD1Q5SYB0 1578 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 TTC37Q6PGP7 1564 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 KDM4FA0A1W2PPD8 638 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 EFCAB5A4FU69 1503 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 FAM69CQ0P6D2 419 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 HIRIP3Q9BW71 556 aaPredicted RBP5.2□□□□□ -1.58
MCF2-210ENST00000536274 MYT1LQ9UL68 1186 aa5.2□□□□□ -1.58
MCF2-210ENST00000536274 B4GALNT3Q6L9W6 998 aa5.19□□□□□ -1.58
MCF2-210ENST00000536274 ZBTB47Q9UFB7 747 aaPredicted RBP5.19□□□□□ -1.58
MCF2-210ENST00000536274 HAP1P54257 671 aaPredicted RBP5.19□□□□□ -1.58
MCF2-210ENST00000536274 TPRNQ4KMQ1 711 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms