RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 MAGI1Q96QZ7 1491 aaPredicted RBP22.41■■□□□ 1.18
CHMP1A-202ENST00000535997 ANKRD30BQ9BXX2 1392 aa22.41■■□□□ 1.18
CHMP1A-202ENST00000535997 MYT1Q01538 1121 aa22.41■■□□□ 1.18
CHMP1A-202ENST00000535997 WASHC2AQ641Q2 1341 aa22.4■■□□□ 1.18
CHMP1A-202ENST00000535997 ZNF644Q9H582 1327 aaPredicted RBP22.4■■□□□ 1.18
CHMP1A-202ENST00000535997 CHMP7Q8WUX9 453 aaPredicted RBP22.38■■□□□ 1.17
CHMP1A-202ENST00000535997 TROQ12816 1431 aaPredicted RBP22.38■■□□□ 1.17
CHMP1A-202ENST00000535997 RPRD2Q5VT52 1461 aaKnown RBP22.38■■□□□ 1.17
CHMP1A-202ENST00000535997 FKBP8Q14318 412 aa22.37■■□□□ 1.17
CHMP1A-202ENST00000535997 FOXD1Q16676 465 aa22.37■■□□□ 1.17
CHMP1A-202ENST00000535997 SYNJ2O15056 1496 aa22.35■■□□□ 1.17
CHMP1A-202ENST00000535997 SLC4A1APQ9BWU0 796 aaKnown RBP22.34■■□□□ 1.17
CHMP1A-202ENST00000535997 CFDP1Q9UEE9 299 aaPredicted RBP22.34■■□□□ 1.17
CHMP1A-202ENST00000535997 PRG4Q92954 1404 aaPredicted RBP22.33■■□□□ 1.17
CHMP1A-202ENST00000535997 NEFLP07196 543 aa22.33■■□□□ 1.16
CHMP1A-202ENST00000535997 ERCC6Q03468 1493 aa22.32■■□□□ 1.16
CHMP1A-202ENST00000535997 CARMIL2Q6F5E8 1435 aa22.31■■□□□ 1.16
CHMP1A-202ENST00000535997 CEP170Q5SW79 1584 aa22.3■■□□□ 1.16
CHMP1A-202ENST00000535997 TSHZ2Q9NRE2 1034 aa22.3■■□□□ 1.16
CHMP1A-202ENST00000535997 NCOA1Q15788 1441 aa22.3■■□□□ 1.16
CHMP1A-202ENST00000535997 GPATCH8Q9UKJ3 1502 aaKnown RBP22.3■■□□□ 1.16
CHMP1A-202ENST00000535997 PLB1Q6P1J6 1458 aa22.29■■□□□ 1.16
CHMP1A-202ENST00000535997 JPH4Q96JJ6 628 aa22.29■■□□□ 1.16
CHMP1A-202ENST00000535997 ITSN2Q9NZM3 1697 aa22.29■■□□□ 1.16
CHMP1A-202ENST00000535997 CAMSAP2Q08AD1 1489 aa22.28■■□□□ 1.16
CHMP1A-202ENST00000535997 TEX14Q8IWB6 1497 aa22.27■■□□□ 1.16
CHMP1A-202ENST00000535997 NBPF8Q3BBV2 869 aa22.27■■□□□ 1.16
CHMP1A-202ENST00000535997 ADCY10Q96PN6 1610 aa22.26■■□□□ 1.15
CHMP1A-202ENST00000535997 NUP160Q12769 1436 aa22.26■■□□□ 1.15
CHMP1A-202ENST00000535997 CNTLNQ9NXG0 1405 aa22.26■■□□□ 1.15
CHMP1A-202ENST00000535997 FBLN2P98095 1184 aa22.25■■□□□ 1.15
CHMP1A-202ENST00000535997 CCDC7Q96M83 1385 aa22.25■■□□□ 1.15
CHMP1A-202ENST00000535997 ADGRL2O95490 1459 aa22.24■■□□□ 1.15
CHMP1A-202ENST00000535997 BCANQ96GW7 911 aa22.24■■□□□ 1.15
CHMP1A-202ENST00000535997 C11orf95C9JLR9 678 aaPredicted RBP22.23■■□□□ 1.15
CHMP1A-202ENST00000535997 PZPP20742 1482 aa22.23■■□□□ 1.15
CHMP1A-202ENST00000535997 SPATA31E1Q6ZUB1 1445 aa22.22■■□□□ 1.15
CHMP1A-202ENST00000535997 ADGBQ8N7X0 1667 aa22.22■■□□□ 1.15
CHMP1A-202ENST00000535997 HNRNPUQ00839 825 aaKnown RBP eCLIP22.22■■□□□ 1.15
CHMP1A-202ENST00000535997 ANKRD30AQ9BXX3 1397 aa22.21■■□□□ 1.15
CHMP1A-202ENST00000535997 PLEKHD1A6NEE1 506 aa22.2■■□□□ 1.15
CHMP1A-202ENST00000535997 ZNF777Q9ULD5 760 aaPredicted RBP22.2■■□□□ 1.14
CHMP1A-202ENST00000535997 KIF14Q15058 1648 aa22.2■■□□□ 1.14
CHMP1A-202ENST00000535997 PRKRIP1Q9H875 184 aaPredicted RBP22.18■■□□□ 1.14
CHMP1A-202ENST00000535997 KIAA1107Q9UPP5 1409 aa22.17■■□□□ 1.14
CHMP1A-202ENST00000535997 CROCC2H7BZ55 1655 aa22.16■■□□□ 1.14
CHMP1A-202ENST00000535997 ABCA8O94911 1581 aa22.14■■□□□ 1.13
CHMP1A-202ENST00000535997 ANKRD50Q9ULJ7 1429 aa22.13■■□□□ 1.13
CHMP1A-202ENST00000535997 KIF7Q2M1P5 1343 aa22.13■■□□□ 1.13
CHMP1A-202ENST00000535997 PKD2Q13563 968 aa22.13■■□□□ 1.13
CHMP1A-202ENST00000535997 ATP10BO94823 1461 aa22.12■■□□□ 1.13
CHMP1A-202ENST00000535997 POLR1AO95602 1720 aaPredicted RBP22.12■■□□□ 1.13
CHMP1A-202ENST00000535997 ABCC10Q5T3U5 1492 aa22.11■■□□□ 1.13
CHMP1A-202ENST00000535997 MBD5Q9P267 1494 aa22.1■■□□□ 1.13
CHMP1A-202ENST00000535997 SHANK2Q9UPX8 1470 aa22.1■■□□□ 1.13
CHMP1A-202ENST00000535997 CDC42BPAQ5VT25 1732 aa22.09■■□□□ 1.13
CHMP1A-202ENST00000535997 CCDC184Q52MB2 194 aa22.08■■□□□ 1.13
CHMP1A-202ENST00000535997 TSPY4P0CV99 314 aa22.08■■□□□ 1.12
CHMP1A-202ENST00000535997 TSPY10P0CW01 314 aa22.08■■□□□ 1.12
CHMP1A-202ENST00000535997 C9orf84Q5VXU9 1444 aa22.05■■□□□ 1.12
CHMP1A-202ENST00000535997 MRS2Q9HD23 443 aa22.05■■□□□ 1.12
CHMP1A-202ENST00000535997 ARID4BQ4LE39 1312 aaPredicted RBP22.05■■□□□ 1.12
CHMP1A-202ENST00000535997 NUP155O75694 1391 aa22.04■■□□□ 1.12
CHMP1A-202ENST00000535997 ERICH6BQ5W0A0 696 aa22.03■■□□□ 1.12
CHMP1A-202ENST00000535997 USP47Q96K76 1375 aa22.01■■□□□ 1.11
CHMP1A-202ENST00000535997 UHRF1BP1Q6BDS2 1440 aa22.01■■□□□ 1.11
CHMP1A-202ENST00000535997 FAM9BQ8IZU0 186 aa22.01■■□□□ 1.11
CHMP1A-202ENST00000535997 PTPRGP23470 1445 aa21.99■■□□□ 1.11
CHMP1A-202ENST00000535997 ZBED9Q6R2W3 1325 aa21.99■■□□□ 1.11
CHMP1A-202ENST00000535997 KDM5DQ9BY66 1539 aa21.99■■□□□ 1.11
CHMP1A-202ENST00000535997 RSPH4AQ5TD94 716 aa21.99■■□□□ 1.11
CHMP1A-202ENST00000535997 ARHGEF5Q12774 1597 aa21.98■■□□□ 1.11
CHMP1A-202ENST00000535997 ZNF326Q5BKZ1 582 aaKnown RBP21.97■■□□□ 1.11
CHMP1A-202ENST00000535997 HNRNPMP52272 730 aaKnown RBP eCLIP21.96■■□□□ 1.11
CHMP1A-202ENST00000535997 ARHGEF12Q9NZN5 1544 aa21.96■■□□□ 1.11
CHMP1A-202ENST00000535997 KIF15Q9NS87 1388 aa21.95■■□□□ 1.1
CHMP1A-202ENST00000535997 DHX29Q7Z478 1369 aaKnown RBP21.95■■□□□ 1.1
CHMP1A-202ENST00000535997 KDM5CP41229 1560 aa21.94■■□□□ 1.1
CHMP1A-202ENST00000535997 RALGAPBQ86X10 1494 aa21.93■■□□□ 1.1
CHMP1A-202ENST00000535997 BCORL1Q5H9F3 1711 aa21.93■■□□□ 1.1
CHMP1A-202ENST00000535997 RBM19Q9Y4C8 960 aaKnown RBP21.92■■□□□ 1.1
CHMP1A-202ENST00000535997 ROCK2O75116 1388 aaKnown RBP21.92■■□□□ 1.1
CHMP1A-202ENST00000535997 CARD11Q9BXL7 1154 aa21.9■■□□□ 1.1
CHMP1A-202ENST00000535997 CCDC141Q6ZP82 1450 aa21.89■■□□□ 1.1
CHMP1A-202ENST00000535997 IRX6P78412 446 aaPredicted RBP21.87■■□□□ 1.09
CHMP1A-202ENST00000535997 CDC42BPBQ9Y5S2 1711 aa21.86■■□□□ 1.09
CHMP1A-202ENST00000535997 PPP4R2Q9NY27 417 aa21.86■■□□□ 1.09
CHMP1A-202ENST00000535997 PREX2Q70Z35 1606 aa21.85■■□□□ 1.09
CHMP1A-202ENST00000535997 SAMD9LQ8IVG5 1584 aa21.85■■□□□ 1.09
CHMP1A-202ENST00000535997 POLR3GLQ9BT43 218 aa21.85■■□□□ 1.09
CHMP1A-202ENST00000535997 DCAF11Q8TEB1 546 aa21.85■■□□□ 1.09
CHMP1A-202ENST00000535997 KDM2AQ9Y2K7 1162 aa21.83■■□□□ 1.09
CHMP1A-202ENST00000535997 ANP32EQ9BTT0 268 aa21.82■■□□□ 1.08
CHMP1A-202ENST00000535997 FAM135AQ9P2D6 1515 aa21.82■■□□□ 1.08
CHMP1A-202ENST00000535997 ST20-MTHFSA0A0A6YYL1 179 aa21.81■■□□□ 1.08
CHMP1A-202ENST00000535997 KTN1Q86UP2 1357 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-202ENST00000535997 MAST1Q9Y2H9 1570 aa21.77■■□□□ 1.08
CHMP1A-202ENST00000535997 SMG6Q86US8 1419 aaKnown RBP21.77■■□□□ 1.08
CHMP1A-202ENST00000535997 PNISRQ8TF01 805 aaKnown RBP21.77■■□□□ 1.08
CHMP1A-202ENST00000535997 SHROOM2Q13796 1616 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms