RNA–Protein interactions for RNA: ENST00000535222.5

CPSF7-214, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 940 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-214ENST00000535222 PHF23Q9BUL5 403 aaPredicted RBP13.62□□□□□ -0.23
CPSF7-214ENST00000535222 ZNF335Q9H4Z2 1342 aaPredicted RBP13.61□□□□□ -0.23
CPSF7-214ENST00000535222 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
CPSF7-214ENST00000535222 RGS17Q9UGC6 210 aaPredicted RBP13.59□□□□□ -0.23
CPSF7-214ENST00000535222 ATP10AO60312 1499 aa13.58□□□□□ -0.24
CPSF7-214ENST00000535222 RAPGEF2Q9Y4G8 1499 aa13.57□□□□□ -0.24
CPSF7-214ENST00000535222 TRAPPC8Q9Y2L5 1435 aa13.56□□□□□ -0.24
CPSF7-214ENST00000535222 TOM1O60784 492 aa13.54□□□□□ -0.24
CPSF7-214ENST00000535222 C9orf84Q5VXU9 1444 aa13.54□□□□□ -0.24
CPSF7-214ENST00000535222 HECW1Q76N89 1606 aa13.53□□□□□ -0.24
CPSF7-214ENST00000535222 CFAP74Q9C0B2 1584 aa13.5□□□□□ -0.25
CPSF7-214ENST00000535222 PKD2Q13563 968 aa13.5□□□□□ -0.25
CPSF7-214ENST00000535222 ARID3CA6NKF2 412 aa13.49□□□□□ -0.25
CPSF7-214ENST00000535222 PIP4K2BP78356 416 aa13.49□□□□□ -0.25
CPSF7-214ENST00000535222 CAMSAP1Q5T5Y3 1602 aa13.49□□□□□ -0.25
CPSF7-214ENST00000535222 NCKAP5LQ9HCH0 1330 aa13.48□□□□□ -0.25
CPSF7-214ENST00000535222 C3P01024 1663 aa13.47□□□□□ -0.25
CPSF7-214ENST00000535222 PLA2R1Q13018 1463 aa13.47□□□□□ -0.25
CPSF7-214ENST00000535222 FAM9AQ8IZU1 332 aaPredicted RBP13.46□□□□□ -0.25
CPSF7-214ENST00000535222 TCOF1Q13428 1488 aaKnown RBP13.46□□□□□ -0.25
CPSF7-214ENST00000535222 SCAF1Q9H7N4 1312 aaKnown RBP13.44□□□□□ -0.26
CPSF7-214ENST00000535222 NPATQ14207 1427 aa13.44□□□□□ -0.26
CPSF7-214ENST00000535222 SCAPERQ9BY12 1400 aa13.44□□□□□ -0.26
CPSF7-214ENST00000535222 ALKQ9UM73 1620 aa13.43□□□□□ -0.26
CPSF7-214ENST00000535222 CPS1P31327 1500 aa13.42□□□□□ -0.26
CPSF7-214ENST00000535222 AGLP35573 1532 aa13.42□□□□□ -0.26
CPSF7-214ENST00000535222 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.42□□□□□ -0.26
CPSF7-214ENST00000535222 REREQ9P2R6 1566 aa13.41□□□□□ -0.26
CPSF7-214ENST00000535222 PTPRKQ15262 1439 aa13.41□□□□□ -0.26
CPSF7-214ENST00000535222 POTEAQ6S8J7 498 aa13.41□□□□□ -0.26
CPSF7-214ENST00000535222 PLEKHD1A6NEE1 506 aa13.4□□□□□ -0.26
CPSF7-214ENST00000535222 CTTNBP2Q8WZ74 1663 aa13.4□□□□□ -0.26
CPSF7-214ENST00000535222 CNTLNQ9NXG0 1405 aa13.39□□□□□ -0.27
CPSF7-214ENST00000535222 PPP6R1Q9UPN7 881 aa13.39□□□□□ -0.27
CPSF7-214ENST00000535222 PLCH2O75038 1416 aa13.39□□□□□ -0.27
CPSF7-214ENST00000535222 NUP153P49790 1475 aaKnown RBP13.37□□□□□ -0.27
CPSF7-214ENST00000535222 RAPGEF6Q8TEU7 1601 aa13.36□□□□□ -0.27
CPSF7-214ENST00000535222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.36□□□□□ -0.27
CPSF7-214ENST00000535222 HNRNPUL2Q1KMD3 747 aaKnown RBP13.36□□□□□ -0.27
CPSF7-214ENST00000535222 SHANK2Q9UPX8 1470 aa13.35□□□□□ -0.27
CPSF7-214ENST00000535222 ESF1Q9H501 851 aaKnown RBP13.34□□□□□ -0.27
CPSF7-214ENST00000535222 KDM5CP41229 1560 aa13.33□□□□□ -0.28
CPSF7-214ENST00000535222 ZNF518AQ6AHZ1 1483 aa13.33□□□□□ -0.28
CPSF7-214ENST00000535222 ZNF142P52746 1687 aaPredicted RBP13.32□□□□□ -0.28
CPSF7-214ENST00000535222 UPF1Q92900 1129 aaKnown RBP eCLIP13.32□□□□□ -0.28
CPSF7-214ENST00000535222 ZMYM3Q14202 1370 aa13.32□□□□□ -0.28
CPSF7-214ENST00000535222 SUPT5HO00267 1087 aaKnown RBP13.31□□□□□ -0.28
CPSF7-214ENST00000535222 DIP2CQ9Y2E4 1556 aa13.31□□□□□ -0.28
CPSF7-214ENST00000535222 P3H3Q8IVL6 736 aa13.3□□□□□ -0.28
CPSF7-214ENST00000535222 AFAP1Q8N556 730 aa13.3□□□□□ -0.28
CPSF7-214ENST00000535222 MLH3Q9UHC1 1453 aa13.29□□□□□ -0.28
CPSF7-214ENST00000535222 EFCAB2Q5VUJ9 269 aa13.29□□□□□ -0.28
CPSF7-214ENST00000535222 MROH2AA6NES4 1674 aa13.28□□□□□ -0.28
CPSF7-214ENST00000535222 CEP170BQ9Y4F5 1589 aaPredicted RBP13.27□□□□□ -0.29
CPSF7-214ENST00000535222 SAMD9Q5K651 1589 aa13.26□□□□□ -0.29
CPSF7-214ENST00000535222 VWDEQ8N2E2 1590 aa13.25□□□□□ -0.29
CPSF7-214ENST00000535222 PRXQ9BXM0 1461 aa13.25□□□□□ -0.29
CPSF7-214ENST00000535222 MYO3AQ8NEV4 1616 aa13.24□□□□□ -0.29
CPSF7-214ENST00000535222 ABCA6Q8N139 1617 aa13.23□□□□□ -0.29
CPSF7-214ENST00000535222 NEURL4Q96JN8 1562 aa13.23□□□□□ -0.29
CPSF7-214ENST00000535222 SETD1AO15047 1707 aaKnown RBP13.22□□□□□ -0.29
CPSF7-214ENST00000535222 A2ML1A8K2U0 1454 aa13.2□□□□□ -0.3
CPSF7-214ENST00000535222 LRRC7Q96NW7 1537 aa13.19□□□□□ -0.3
CPSF7-214ENST00000535222 DNMT1P26358 1616 aaKnown RBP13.19□□□□□ -0.3
CPSF7-214ENST00000535222 SUPT6HQ7KZ85 1726 aaKnown RBP13.19□□□□□ -0.3
CPSF7-214ENST00000535222 MED14O60244 1454 aa13.18□□□□□ -0.3
CPSF7-214ENST00000535222 FAM135BQ49AJ0 1406 aa13.18□□□□□ -0.3
CPSF7-214ENST00000535222 RNF17Q9BXT8 1623 aaKnown RBP13.16□□□□□ -0.3
CPSF7-214ENST00000535222 SENP3Q9H4L4 574 aaPredicted RBP13.15□□□□□ -0.3
CPSF7-214ENST00000535222 POLR1AO95602 1720 aaPredicted RBP13.14□□□□□ -0.31
CPSF7-214ENST00000535222 ANKLE2Q86XL3 938 aa13.14□□□□□ -0.31
CPSF7-214ENST00000535222 MYT1LQ9UL68 1186 aa13.14□□□□□ -0.31
CPSF7-214ENST00000535222 MYO5CQ9NQX4 1742 aa13.13□□□□□ -0.31
CPSF7-214ENST00000535222 KIDINS220Q9ULH0 1771 aa13.12□□□□□ -0.31
CPSF7-214ENST00000535222 STRCP1A6NGW2 1772 aa13.1□□□□□ -0.31
CPSF7-214ENST00000535222 NPHP4O75161 1426 aaPredicted RBP13.1□□□□□ -0.31
CPSF7-214ENST00000535222 SYNMO15061 1565 aa13.1□□□□□ -0.31
CPSF7-214ENST00000535222 DEPDC5O75140 1603 aa13.1□□□□□ -0.31
CPSF7-214ENST00000535222 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.08□□□□□ -0.311e-11■■□□□ 12.1
CPSF7-214ENST00000535222 CLTCQ00610 1675 aaKnown RBP13.08□□□□□ -0.32
CPSF7-214ENST00000535222 THEMISQ8N1K5 641 aaPredicted RBP13.07□□□□□ -0.32
CPSF7-214ENST00000535222 ARHGAP5Q13017 1502 aa13.07□□□□□ -0.32
CPSF7-214ENST00000535222 CDK12Q9NYV4 1490 aaPredicted RBP13.06□□□□□ -0.32
CPSF7-214ENST00000535222 CDK13Q14004 1512 aaKnown RBP13.06□□□□□ -0.32
CPSF7-214ENST00000535222 ZNF772Q68DY9 489 aaPredicted RBP13.05□□□□□ -0.32
CPSF7-214ENST00000535222 ABCC1P33527 1531 aa13.04□□□□□ -0.32
CPSF7-214ENST00000535222 PLXNC1O60486 1568 aa13.03□□□□□ -0.32
CPSF7-214ENST00000535222 CDK11AQ9UQ88 783 aaPredicted RBP13.02□□□□□ -0.33
CPSF7-214ENST00000535222 TNRQ92752 1358 aa13.02□□□□□ -0.33
CPSF7-214ENST00000535222 TRIM52Q96A61 297 aa13.01□□□□□ -0.33
CPSF7-214ENST00000535222 IQGAP1P46940 1657 aa13.01□□□□□ -0.33
CPSF7-214ENST00000535222 CDC42BPBQ9Y5S2 1711 aa13□□□□□ -0.33
CPSF7-214ENST00000535222 KIF14Q15058 1648 aa13□□□□□ -0.33
CPSF7-214ENST00000535222 JCADQ9P266 1359 aa13□□□□□ -0.33
CPSF7-214ENST00000535222 ITSN2Q9NZM3 1697 aa12.99□□□□□ -0.33
CPSF7-214ENST00000535222 SAMD9LQ8IVG5 1584 aa12.99□□□□□ -0.33
CPSF7-214ENST00000535222 KDM5DQ9BY66 1539 aa12.99□□□□□ -0.33
CPSF7-214ENST00000535222 TROQ12816 1431 aaPredicted RBP12.99□□□□□ -0.33
CPSF7-214ENST00000535222 RXRBP28702 533 aa12.99□□□□□ -0.33
CPSF7-214ENST00000535222 FBXO31Q5XUX0 539 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms