RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 HOXB3P14651 431 aaPredicted RBP9.2□□□□□ -0.94
PCF11-205ENST00000530906 PEG3Q9GZU2 1588 aa9.2□□□□□ -0.94
PCF11-205ENST00000530906 SOX12O15370 315 aa9.18□□□□□ -0.94
PCF11-205ENST00000530906 MS4A4AQ96JQ5 239 aa9.18□□□□□ -0.94
PCF11-205ENST00000530906 POTEB3A0JP26 581 aa9.17□□□□□ -0.94
PCF11-205ENST00000530906 EMP3P54852 163 aa9.17□□□□□ -0.94
PCF11-205ENST00000530906 POTEBQ6S5H4 581 aa9.17□□□□□ -0.94
PCF11-205ENST00000530906 MICALL2Q8IY33 904 aa9.15□□□□□ -0.94
PCF11-205ENST00000530906 TMEM92Q6UXU6 159 aa9.14□□□□□ -0.95
PCF11-205ENST00000530906 PHF8Q9UPP1 1060 aa9.14□□□□□ -0.95
PCF11-205ENST00000530906 SPNS2Q8IVW8 549 aa9.13□□□□□ -0.95
PCF11-205ENST00000530906 HS3ST6Q96QI5 342 aa9.13□□□□□ -0.95
PCF11-205ENST00000530906 EIF4G1Q04637 1599 aaKnown RBP9.12□□□□□ -0.95
PCF11-205ENST00000530906 FAM205CA6NFA0 338 aa9.11□□□□□ -0.95
PCF11-205ENST00000530906 HOXB1P14653 301 aaPredicted RBP9.1□□□□□ -0.95
PCF11-205ENST00000530906 MMRN1Q13201 1228 aa9.1□□□□□ -0.95
PCF11-205ENST00000530906 KRTAP3-3Q9BYR6 98 aa9.1□□□□□ -0.95
PCF11-205ENST00000530906 KRTAP3-2Q9BYR7 98 aa9.1□□□□□ -0.95
PCF11-205ENST00000530906 SMARCA2P51531 1590 aa9.1□□□□□ -0.95
PCF11-205ENST00000530906 DOK7Q18PE1 504 aa9.09□□□□□ -0.95
PCF11-205ENST00000530906 FBXO22Q8NEZ5 403 aa9.09□□□□□ -0.95
PCF11-205ENST00000530906 BCL11BQ9C0K0 894 aaPredicted RBP9.09□□□□□ -0.95
PCF11-205ENST00000530906 ZNF710Q8N1W2 664 aa9.07□□□□□ -0.96
PCF11-205ENST00000530906 NLRP6P59044 892 aa9.06□□□□□ -0.96
PCF11-205ENST00000530906 PKD2Q13563 968 aa9.06□□□□□ -0.96
PCF11-205ENST00000530906 TAOK2Q9UL54 1235 aa9.06□□□□□ -0.96
PCF11-205ENST00000530906 CCDC88BA6NC98 1476 aa9.05□□□□□ -0.96
PCF11-205ENST00000530906 ECM2O94769 699 aaPredicted RBP9.04□□□□□ -0.96
PCF11-205ENST00000530906 MFRPQ9BY79 579 aa9.04□□□□□ -0.96
PCF11-205ENST00000530906 STK24Q9Y6E0 443 aa9.04□□□□□ -0.96
PCF11-205ENST00000530906 ATAD2BQ9ULI0 1458 aa9.03□□□□□ -0.96
PCF11-205ENST00000530906 STK25O00506 426 aa9.02□□□□□ -0.97
PCF11-205ENST00000530906 RIMBP2O15034 1052 aa9.02□□□□□ -0.97
PCF11-205ENST00000530906 RGL2O15211 777 aa9.01□□□□□ -0.97
PCF11-205ENST00000530906 GPR153Q6NV75 609 aa9.01□□□□□ -0.97
PCF11-205ENST00000530906 ZSWIM6Q9HCJ5 1215 aa9.01□□□□□ -0.97
PCF11-205ENST00000530906 HMGXB3Q12766 1538 aa9□□□□□ -0.97
PCF11-205ENST00000530906 BAZ1BQ9UIG0 1483 aaKnown RBP9□□□□□ -0.97
PCF11-205ENST00000530906 ERBB3P21860 1342 aa9□□□□□ -0.97
PCF11-205ENST00000530906 EEA1Q15075 1411 aa8.97□□□□□ -0.97
PCF11-205ENST00000530906 NCAPD3P42695 1498 aa8.96□□□□□ -0.97
PCF11-205ENST00000530906 KIF3CO14782 793 aa8.96□□□□□ -0.98
PCF11-205ENST00000530906 VARS2Q5ST30 1063 aaKnown RBP8.96□□□□□ -0.98
PCF11-205ENST00000530906 ARSIQ5FYB1 569 aa8.94□□□□□ -0.98
PCF11-205ENST00000530906 C2orf72A6NCS6 295 aa8.92□□□□□ -0.98
PCF11-205ENST00000530906 ZNF687Q8N1G0 1237 aa8.92□□□□□ -0.98
PCF11-205ENST00000530906 KHSRPQ92945 711 aaKnown RBP eCLIP8.91□□□□□ -0.985e-6■■■□□ 19
PCF11-205ENST00000530906 PPP1R37O75864 691 aa8.88□□□□□ -0.99
PCF11-205ENST00000530906 WRNQ14191 1432 aaPredicted RBP eCLIP8.88□□□□□ -0.99
PCF11-205ENST00000530906 ABCC8Q09428 1581 aa8.87□□□□□ -0.99
PCF11-205ENST00000530906 LOC105371045A0A1W2PR82 267 aa8.87□□□□□ -0.99
PCF11-205ENST00000530906 ZNF316A6NFI3 1004 aaPredicted RBP8.86□□□□□ -0.99
PCF11-205ENST00000530906 SLC34A2O95436 690 aa8.84□□□□□ -0.99
PCF11-205ENST00000530906 PRDM2Q13029 1718 aa8.83□□□□□ -1
PCF11-205ENST00000530906 HS6ST3Q8IZP7 471 aa8.82□□□□□ -1
PCF11-205ENST00000530906 TMC2Q8TDI7 906 aa8.82□□□□□ -1
PCF11-205ENST00000530906 TOP2BQ02880 1626 aa8.82□□□□□ -1
PCF11-205ENST00000530906 BIVM-ERCC5R4GMW8 1640 aa8.82□□□□□ -1
PCF11-205ENST00000530906 NUDT7P0C024 238 aa8.81□□□□□ -1
PCF11-205ENST00000530906 PCDHGA4Q9Y5G9 962 aa8.81□□□□□ -1
PCF11-205ENST00000530906 CFTRP13569 1480 aa8.8□□□□□ -1
PCF11-205ENST00000530906 SYNJ1O43426 1573 aa8.8□□□□□ -1
PCF11-205ENST00000530906 RNF166Q96A37 237 aaPredicted RBP8.79□□□□□ -1
PCF11-205ENST00000530906 MYT1LQ9UL68 1186 aa8.79□□□□□ -1
PCF11-205ENST00000530906 KIF21BO75037 1637 aa8.79□□□□□ -1
PCF11-205ENST00000530906 TNIKQ9UKE5 1360 aa8.78□□□□□ -1
PCF11-205ENST00000530906 LHX6Q9UPM6 363 aa8.78□□□□□ -1
PCF11-205ENST00000530906 TRIM26Q12899 539 aaPredicted RBP8.77□□□□□ -1.01
PCF11-205ENST00000530906 POTEEQ6S8J3 1075 aa8.77□□□□□ -1.01
PCF11-205ENST00000530906 FAM9AQ8IZU1 332 aaPredicted RBP8.77□□□□□ -1.01
PCF11-205ENST00000530906 GOLGA3Q08378 1498 aa8.77□□□□□ -1.01
PCF11-205ENST00000530906 CEP164Q9UPV0 1460 aa8.77□□□□□ -1.01
PCF11-205ENST00000530906 KDM4FA0A1W2PPD8 638 aa8.76□□□□□ -1.01
PCF11-205ENST00000530906 LSM11P83369 360 aaKnown RBP eCLIP8.76□□□□□ -1.01
PCF11-205ENST00000530906 SOGA1O94964 1423 aa8.75□□□□□ -1.01
PCF11-205ENST00000530906 ANKRD13DQ6ZTN6 518 aa8.75□□□□□ -1.01
PCF11-205ENST00000530906 DNAJC5Q9H3Z4 198 aa8.75□□□□□ -1.01
PCF11-205ENST00000530906 CC2D2AQ9P2K1 1620 aa8.75□□□□□ -1.01
PCF11-205ENST00000530906 CHGAP10645 457 aaKnown RBP8.74□□□□□ -1.01
PCF11-205ENST00000530906 PTGER2P43116 358 aa8.74□□□□□ -1.01
PCF11-205ENST00000530906 FOXK1P85037 733 aa8.74□□□□□ -1.01
PCF11-205ENST00000530906 GPHNQ9NQX3 736 aaPredicted RBP8.74□□□□□ -1.01
PCF11-205ENST00000530906 PBX2P40425 430 aa8.73□□□□□ -1.01
PCF11-205ENST00000530906 NKX1-1Q15270 411 aaPredicted RBP8.73□□□□□ -1.01
PCF11-205ENST00000530906 PTCD2Q8WV60 388 aaKnown RBP8.73□□□□□ -1.01
PCF11-205ENST00000530906 PLPP6Q8IY26 295 aa8.72□□□□□ -1.01
PCF11-205ENST00000530906 CADPSQ9ULU8 1353 aa8.72□□□□□ -1.01
PCF11-205ENST00000530906 ERICH3Q5RHP9 1530 aa8.71□□□□□ -1.01
PCF11-205ENST00000530906 HRCP23327 699 aa8.71□□□□□ -1.02
PCF11-205ENST00000530906 DSG2Q14126 1118 aa8.71□□□□□ -1.02
PCF11-205ENST00000530906 PCGF6Q9BYE7 350 aa8.71□□□□□ -1.02
PCF11-205ENST00000530906 AXIN2Q9Y2T1 843 aa8.71□□□□□ -1.02
PCF11-205ENST00000530906 CEP162Q5TB80 1403 aa8.71□□□□□ -1.02
PCF11-205ENST00000530906 CUX1P39880 1505 aa8.69□□□□□ -1.02
PCF11-205ENST00000530906 PSDA5PKW4 1024 aaPredicted RBP8.67□□□□□ -1.02
PCF11-205ENST00000530906 RUSC2Q8N2Y8 1516 aa8.67□□□□□ -1.02
PCF11-205ENST00000530906 KIF27Q86VH2 1401 aa8.66□□□□□ -1.02
PCF11-205ENST00000530906 ARHGAP33O14559 1287 aa8.65□□□□□ -1.02
PCF11-205ENST00000530906 LAMC3Q9Y6N6 1575 aa8.65□□□□□ -1.03
PCF11-205ENST00000530906 PRXQ9BXM0 1461 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms