RNA–Protein interactions for RNA: ENST00000527699.5

CAPN1-210, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 564 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-210ENST00000527699 ABCA9Q8IUA7 1624 aa16.69■□□□□ 0.26
CAPN1-210ENST00000527699 HSPA1LP34931 641 aa16.68■□□□□ 0.26
CAPN1-210ENST00000527699 SIGLEC1Q9BZZ2 1709 aa16.67■□□□□ 0.26
CAPN1-210ENST00000527699 DENND4BO75064 1496 aaPredicted RBP16.66■□□□□ 0.26
CAPN1-210ENST00000527699 PIP4K2BP78356 416 aa16.65■□□□□ 0.26
CAPN1-210ENST00000527699 RICTORQ6R327 1708 aa16.64■□□□□ 0.25
CAPN1-210ENST00000527699 ZFYVE16Q7Z3T8 1539 aa16.64■□□□□ 0.25
CAPN1-210ENST00000527699 FHOD3Q2V2M9 1422 aa16.63■□□□□ 0.25
CAPN1-210ENST00000527699 SETD1BQ9UPS6 1966 aaKnown RBP16.63■□□□□ 0.25
CAPN1-210ENST00000527699 RAPGEF6Q8TEU7 1601 aa16.62■□□□□ 0.25
CAPN1-210ENST00000527699 EFCAB5A4FU69 1503 aa16.61■□□□□ 0.25
CAPN1-210ENST00000527699 SAMD9Q5K651 1589 aa16.6■□□□□ 0.25
CAPN1-210ENST00000527699 ZNF335Q9H4Z2 1342 aaPredicted RBP16.6■□□□□ 0.25
CAPN1-210ENST00000527699 ARHGEF12Q9NZN5 1544 aa16.57■□□□□ 0.24
CAPN1-210ENST00000527699 NUP153P49790 1475 aaKnown RBP16.56■□□□□ 0.24
CAPN1-210ENST00000527699 ATP1B4Q9UN42 357 aaPredicted RBP16.56■□□□□ 0.24
CAPN1-210ENST00000527699 SENP3Q9H4L4 574 aaPredicted RBP16.54■□□□□ 0.24
CAPN1-210ENST00000527699 NCOA1Q15788 1441 aa16.53■□□□□ 0.24
CAPN1-210ENST00000527699 PLEKHD1A6NEE1 506 aa16.53■□□□□ 0.24
CAPN1-210ENST00000527699 ZMYM4Q5VZL5 1548 aa16.53■□□□□ 0.24
CAPN1-210ENST00000527699 TOM1O60784 492 aa16.5■□□□□ 0.23
CAPN1-210ENST00000527699 CFAP74Q9C0B2 1584 aa16.5■□□□□ 0.23
CAPN1-210ENST00000527699 MAGI2Q86UL8 1455 aa16.49■□□□□ 0.23
CAPN1-210ENST00000527699 HECW1Q76N89 1606 aa16.49■□□□□ 0.23
CAPN1-210ENST00000527699 UBTFP17480 764 aaKnown RBP16.49■□□□□ 0.23
CAPN1-210ENST00000527699 EEA1Q15075 1411 aa16.49■□□□□ 0.23
CAPN1-210ENST00000527699 NCKAP5LQ9HCH0 1330 aa16.48■□□□□ 0.23
CAPN1-210ENST00000527699 ESF1Q9H501 851 aaKnown RBP16.48■□□□□ 0.23
CAPN1-210ENST00000527699 CDK13Q14004 1512 aaKnown RBP16.47■□□□□ 0.23
CAPN1-210ENST00000527699 CAMSAP1Q5T5Y3 1602 aa16.47■□□□□ 0.23
CAPN1-210ENST00000527699 C9orf84Q5VXU9 1444 aa16.46■□□□□ 0.23
CAPN1-210ENST00000527699 ATP10AO60312 1499 aa16.46■□□□□ 0.23
CAPN1-210ENST00000527699 C3P01024 1663 aa16.46■□□□□ 0.23
CAPN1-210ENST00000527699 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.45■□□□□ 0.22
CAPN1-210ENST00000527699 MYT1LQ9UL68 1186 aa16.42■□□□□ 0.22
CAPN1-210ENST00000527699 TRAPPC8Q9Y2L5 1435 aa16.41■□□□□ 0.22
CAPN1-210ENST00000527699 RGS17Q9UGC6 210 aaPredicted RBP16.38■□□□□ 0.21
CAPN1-210ENST00000527699 SCAPERQ9BY12 1400 aa16.36■□□□□ 0.21
CAPN1-210ENST00000527699 CHIC1Q5VXU3 224 aa16.36■□□□□ 0.21
CAPN1-210ENST00000527699 PPP6R1Q9UPN7 881 aa16.36■□□□□ 0.21
CAPN1-210ENST00000527699 SUPT6HQ7KZ85 1726 aaKnown RBP16.35■□□□□ 0.21
CAPN1-210ENST00000527699 PKD2Q13563 968 aa16.34■□□□□ 0.21
CAPN1-210ENST00000527699 ARHGAP35Q9NRY4 1499 aa16.33■□□□□ 0.2
CAPN1-210ENST00000527699 SETD1AO15047 1707 aaKnown RBP16.32■□□□□ 0.2
CAPN1-210ENST00000527699 PLCH2O75038 1416 aa16.32■□□□□ 0.2
CAPN1-210ENST00000527699 POTEAQ6S8J7 498 aa16.3■□□□□ 0.2
CAPN1-210ENST00000527699 KIF14Q15058 1648 aa16.3■□□□□ 0.2
CAPN1-210ENST00000527699 EFCAB2Q5VUJ9 269 aa16.29■□□□□ 0.2
CAPN1-210ENST00000527699 PTPRKQ15262 1439 aa16.28■□□□□ 0.2
CAPN1-210ENST00000527699 FMN1Q68DA7 1419 aa16.28■□□□□ 0.2
CAPN1-210ENST00000527699 AFAP1Q8N556 730 aa16.28■□□□□ 0.2
CAPN1-210ENST00000527699 CDK11AQ9UQ88 783 aaPredicted RBP16.27■□□□□ 0.2
CAPN1-210ENST00000527699 CPS1P31327 1500 aa16.27■□□□□ 0.2
CAPN1-210ENST00000527699 ARHGAP5Q13017 1502 aa16.25■□□□□ 0.19
CAPN1-210ENST00000527699 MYO5CQ9NQX4 1742 aa16.25■□□□□ 0.19
CAPN1-210ENST00000527699 PLA2R1Q13018 1463 aa16.24■□□□□ 0.19
CAPN1-210ENST00000527699 LRRIQ1Q96JM4 1722 aa16.23■□□□□ 0.19
CAPN1-210ENST00000527699 TROQ12816 1431 aaPredicted RBP16.22■□□□□ 0.19
CAPN1-210ENST00000527699 CNTLNQ9NXG0 1405 aa16.22■□□□□ 0.19
CAPN1-210ENST00000527699 TCOF1Q13428 1488 aaKnown RBP16.22■□□□□ 0.19
CAPN1-210ENST00000527699 NPATQ14207 1427 aa16.21■□□□□ 0.19
CAPN1-210ENST00000527699 SHANK2Q9UPX8 1470 aa16.21■□□□□ 0.19
CAPN1-210ENST00000527699 DIP2CQ9Y2E4 1556 aa16.21■□□□□ 0.18
CAPN1-210ENST00000527699 CLIP1P30622 1438 aa16.2■□□□□ 0.18
CAPN1-210ENST00000527699 ZNF518AQ6AHZ1 1483 aa16.19■□□□□ 0.18
CAPN1-210ENST00000527699 ZNF777Q9ULD5 760 aaPredicted RBP16.19■□□□□ 0.18
CAPN1-210ENST00000527699 MYO3AQ8NEV4 1616 aa16.19■□□□□ 0.18
CAPN1-210ENST00000527699 ZNF142P52746 1687 aaPredicted RBP16.18■□□□□ 0.18
CAPN1-210ENST00000527699 CEP170BQ9Y4F5 1589 aaPredicted RBP16.18■□□□□ 0.18
CAPN1-210ENST00000527699 AGLP35573 1532 aa16.18■□□□□ 0.18
CAPN1-210ENST00000527699 ALKQ9UM73 1620 aa16.17■□□□□ 0.18
CAPN1-210ENST00000527699 UPF1Q92900 1129 aaKnown RBP eCLIP16.17■□□□□ 0.18
CAPN1-210ENST00000527699 REREQ9P2R6 1566 aa16.15■□□□□ 0.18
CAPN1-210ENST00000527699 ABCA6Q8N139 1617 aa16.15■□□□□ 0.18
CAPN1-210ENST00000527699 ZMYM3Q14202 1370 aa16.14■□□□□ 0.17
CAPN1-210ENST00000527699 CDC42BPBQ9Y5S2 1711 aa16.14■□□□□ 0.17
CAPN1-210ENST00000527699 MROH2AA6NES4 1674 aa16.13■□□□□ 0.17
CAPN1-210ENST00000527699 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
CAPN1-210ENST00000527699 POLR1AO95602 1720 aaPredicted RBP16.11■□□□□ 0.17
CAPN1-210ENST00000527699 KDM5CP41229 1560 aa16.11■□□□□ 0.17
CAPN1-210ENST00000527699 HNRNPMP52272 730 aaKnown RBP eCLIP16.1■□□□□ 0.17
CAPN1-210ENST00000527699 SRCAPQ6ZRS2 3230 aa16.09■□□□□ 0.17
CAPN1-210ENST00000527699 CCDC18Q5T9S5 1454 aa16.09■□□□□ 0.17
CAPN1-210ENST00000527699 PREX2Q70Z35 1606 aa16.08■□□□□ 0.17
CAPN1-210ENST00000527699 ABCC1P33527 1531 aa16.08■□□□□ 0.16
CAPN1-210ENST00000527699 TRIM52Q96A61 297 aa16.07■□□□□ 0.16
CAPN1-210ENST00000527699 RNF17Q9BXT8 1623 aaKnown RBP16.07■□□□□ 0.16
CAPN1-210ENST00000527699 CLTCQ00610 1675 aaKnown RBP16.07■□□□□ 0.16
CAPN1-210ENST00000527699 ITSN2Q9NZM3 1697 aa16.07■□□□□ 0.16
CAPN1-210ENST00000527699 VWDEQ8N2E2 1590 aa16.05■□□□□ 0.16
CAPN1-210ENST00000527699 MLH3Q9UHC1 1453 aa16.05■□□□□ 0.16
CAPN1-210ENST00000527699 CDC42BPAQ5VT25 1732 aa16.05■□□□□ 0.16
CAPN1-210ENST00000527699 NEURL4Q96JN8 1562 aa16.04■□□□□ 0.16
CAPN1-210ENST00000527699 KIDINS220Q9ULH0 1771 aa16.03■□□□□ 0.16
CAPN1-210ENST00000527699 DNMT1P26358 1616 aaKnown RBP16.03■□□□□ 0.16
CAPN1-210ENST00000527699 SYCP2Q9BX26 1530 aa16.03■□□□□ 0.16
CAPN1-210ENST00000527699 A2ML1A8K2U0 1454 aa16.03■□□□□ 0.16
CAPN1-210ENST00000527699 FYCO1Q9BQS8 1478 aa16.03■□□□□ 0.16
CAPN1-210ENST00000527699 SPAG9O60271 1321 aaKnown RBP16.02■□□□□ 0.16
CAPN1-210ENST00000527699 SAMD9LQ8IVG5 1584 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms