RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 ABCC5O15440 1437 aa23.7■■□□□ 1.38
SNRNP35-204ENST00000527158 MAPKBP1O60336 1514 aa23.68■■□□□ 1.38
SNRNP35-204ENST00000527158 ROCK1Q13464 1354 aa23.68■■□□□ 1.38
SNRNP35-204ENST00000527158 CDC42BPAQ5VT25 1732 aa23.66■■□□□ 1.38
SNRNP35-204ENST00000527158 GCC2Q8IWJ2 1684 aa23.65■■□□□ 1.38
SNRNP35-204ENST00000527158 KDM5BQ9UGL1 1544 aa23.65■■□□□ 1.38
SNRNP35-204ENST00000527158 ACIN1Q9UKV3 1341 aaKnown RBP23.62■■□□□ 1.37
SNRNP35-204ENST00000527158 ZCCHC11Q5TAX3 1644 aaKnown RBP23.61■■□□□ 1.37
SNRNP35-204ENST00000527158 KCNH8Q96L42 1107 aa23.58■■□□□ 1.36
SNRNP35-204ENST00000527158 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.56■■□□□ 1.36
SNRNP35-204ENST00000527158 PREX2Q70Z35 1606 aa23.55■■□□□ 1.36
SNRNP35-204ENST00000527158 TRIM52Q96A61 297 aa23.55■■□□□ 1.36
SNRNP35-204ENST00000527158 ZNF316A6NFI3 1004 aaPredicted RBP23.54■■□□□ 1.36
SNRNP35-204ENST00000527158 TSPY4P0CV99 314 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 TSPY10P0CW01 314 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 NCOA1Q15788 1441 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 TTC37Q6PGP7 1564 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 ANKRD30AQ9BXX3 1397 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 ADGRL2O95490 1459 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 CROCC2H7BZ55 1655 aa23.52■■□□□ 1.36
SNRNP35-204ENST00000527158 NEUROD1Q13562 356 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 SIN3AQ96ST3 1273 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 TIMELESSQ9UNS1 1208 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 CDC42BPBQ9Y5S2 1711 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 KDM6BO15054 1643 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 RSPH4AQ5TD94 716 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 ADGBQ8N7X0 1667 aa23.51■■□□□ 1.35
SNRNP35-204ENST00000527158 SHANK2Q9UPX8 1470 aa23.5■■□□□ 1.35
SNRNP35-204ENST00000527158 ARHGAP5Q13017 1502 aa23.5■■□□□ 1.35
SNRNP35-204ENST00000527158 HNRNPMP52272 730 aaKnown RBP eCLIP23.5■■□□□ 1.35
SNRNP35-204ENST00000527158 ARHGEF5Q12774 1597 aa23.48■■□□□ 1.35
SNRNP35-204ENST00000527158 SAMD9LQ8IVG5 1584 aa23.47■■□□□ 1.35
SNRNP35-204ENST00000527158 MYO5CQ9NQX4 1742 aa23.47■■□□□ 1.35
SNRNP35-204ENST00000527158 C9orf84Q5VXU9 1444 aa23.47■■□□□ 1.35
SNRNP35-204ENST00000527158 MBD5Q9P267 1494 aa23.46■■□□□ 1.35
SNRNP35-204ENST00000527158 PLCH2O75038 1416 aa23.45■■□□□ 1.34
SNRNP35-204ENST00000527158 MPHOSPH9Q99550 1183 aa23.44■■□□□ 1.34
SNRNP35-204ENST00000527158 CCDC141Q6ZP82 1450 aa23.44■■□□□ 1.34
SNRNP35-204ENST00000527158 PLEKHH2Q8IVE3 1493 aa23.44■■□□□ 1.34
SNRNP35-204ENST00000527158 WDR7Q9Y4E6 1490 aa23.44■■□□□ 1.34
SNRNP35-204ENST00000527158 NPM1P06748 294 aaKnown RBP eCLIP23.43■■□□□ 1.34
SNRNP35-204ENST00000527158 EFCAB2Q5VUJ9 269 aa23.42■■□□□ 1.34
SNRNP35-204ENST00000527158 KIAA1107Q9UPP5 1409 aa23.4■■□□□ 1.34
SNRNP35-204ENST00000527158 DIEXFQ68CQ4 756 aaKnown RBP23.38■■□□□ 1.33
SNRNP35-204ENST00000527158 SYCP2Q9BX26 1530 aa23.38■■□□□ 1.33
SNRNP35-204ENST00000527158 ANKRD50Q9ULJ7 1429 aa23.38■■□□□ 1.33
SNRNP35-204ENST00000527158 TONSLQ96HA7 1378 aa23.36■■□□□ 1.33
SNRNP35-204ENST00000527158 ASXL2Q76L83 1435 aa23.36■■□□□ 1.33
SNRNP35-204ENST00000527158 DENND4BO75064 1496 aaPredicted RBP23.35■■□□□ 1.33
SNRNP35-204ENST00000527158 SLC4A1APQ9BWU0 796 aaKnown RBP23.35■■□□□ 1.33
SNRNP35-204ENST00000527158 KIF15Q9NS87 1388 aa23.35■■□□□ 1.33
SNRNP35-204ENST00000527158 ARAP3Q8WWN8 1544 aa23.34■■□□□ 1.33
SNRNP35-204ENST00000527158 PELP1Q8IZL8 1130 aaKnown RBP23.33■■□□□ 1.33
SNRNP35-204ENST00000527158 PPP1R15AO75807 674 aaPredicted RBP23.31■■□□□ 1.32
SNRNP35-204ENST00000527158 MAST1Q9Y2H9 1570 aa23.3■■□□□ 1.32
SNRNP35-204ENST00000527158 ABCA9Q8IUA7 1624 aa23.28■■□□□ 1.32
SNRNP35-204ENST00000527158 ARHGEF12Q9NZN5 1544 aa23.28■■□□□ 1.32
SNRNP35-204ENST00000527158 SCAF1Q9H7N4 1312 aaKnown RBP23.27■■□□□ 1.32
SNRNP35-204ENST00000527158 FOXD1Q16676 465 aa23.27■■□□□ 1.32
SNRNP35-204ENST00000527158 ABCC1P33527 1531 aa23.27■■□□□ 1.31
SNRNP35-204ENST00000527158 PZPP20742 1482 aa23.26■■□□□ 1.31
SNRNP35-204ENST00000527158 ANKRD30BQ9BXX2 1392 aa23.24■■□□□ 1.31
SNRNP35-204ENST00000527158 NUP155O75694 1391 aa23.23■■□□□ 1.31
SNRNP35-204ENST00000527158 CENPBP07199 599 aaPredicted RBP23.23■■□□□ 1.31
SNRNP35-204ENST00000527158 FANCAO15360 1455 aa23.23■■□□□ 1.31
SNRNP35-204ENST00000527158 PLXNC1O60486 1568 aa23.21■■□□□ 1.31
SNRNP35-204ENST00000527158 TRAPPC8Q9Y2L5 1435 aa23.2■■□□□ 1.3
SNRNP35-204ENST00000527158 PKD2Q13563 968 aa23.18■■□□□ 1.3
SNRNP35-204ENST00000527158 KDM5DQ9BY66 1539 aa23.18■■□□□ 1.3
SNRNP35-204ENST00000527158 SPAG9O60271 1321 aaKnown RBP23.17■■□□□ 1.3
SNRNP35-204ENST00000527158 CYB5RLQ6IPT4 315 aa23.17■■□□□ 1.3
SNRNP35-204ENST00000527158 DUOX2Q9NRD8 1548 aa23.16■■□□□ 1.3
SNRNP35-204ENST00000527158 RPRD2Q5VT52 1461 aaKnown RBP23.15■■□□□ 1.3
SNRNP35-204ENST00000527158 AFAP1Q8N556 730 aa23.15■■□□□ 1.3
SNRNP35-204ENST00000527158 RTEL1-TNFRSF6BF6WH68 1400 aa23.15■■□□□ 1.3
SNRNP35-204ENST00000527158 ADGRL1O94910 1474 aa23.13■■□□□ 1.29
SNRNP35-204ENST00000527158 CD109Q6YHK3 1445 aa23.12■■□□□ 1.29
SNRNP35-204ENST00000527158 ERBINQ96RT1 1412 aa23.11■■□□□ 1.29
SNRNP35-204ENST00000527158 SCAPERQ9BY12 1400 aa23.11■■□□□ 1.29
SNRNP35-204ENST00000527158 RIMBP3CA6NJZ7 1639 aa23.11■■□□□ 1.29
SNRNP35-204ENST00000527158 RIMBP3BA6NNM3 1639 aa23.11■■□□□ 1.29
SNRNP35-204ENST00000527158 RIMBP3Q9UFD9 1639 aa23.11■■□□□ 1.29
SNRNP35-204ENST00000527158 L3MBTL2Q969R5 705 aa23.1■■□□□ 1.29
SNRNP35-204ENST00000527158 FAM135AQ9P2D6 1515 aa23.07■■□□□ 1.28
SNRNP35-204ENST00000527158 UNC13BO14795 1591 aa23.07■■□□□ 1.28
SNRNP35-204ENST00000527158 ZFYVE16Q7Z3T8 1539 aa23.06■■□□□ 1.28
SNRNP35-204ENST00000527158 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.06■■□□□ 1.28
SNRNP35-204ENST00000527158 MYT1LQ9UL68 1186 aa23.05■■□□□ 1.28
SNRNP35-204ENST00000527158 CFAP74Q9C0B2 1584 aa23.05■■□□□ 1.28
SNRNP35-204ENST00000527158 ATP7AQ04656 1500 aa23.03■■□□□ 1.28
SNRNP35-204ENST00000527158 TEX14Q8IWB6 1497 aa23.01■■□□□ 1.27
SNRNP35-204ENST00000527158 INO80Q9ULG1 1556 aaPredicted RBP23.01■■□□□ 1.27
SNRNP35-204ENST00000527158 ZNF518AQ6AHZ1 1483 aa23■■□□□ 1.27
SNRNP35-204ENST00000527158 MAGI2Q86UL8 1455 aa22.98■■□□□ 1.27
SNRNP35-204ENST00000527158 IQGAP3Q86VI3 1631 aa22.98■■□□□ 1.27
SNRNP35-204ENST00000527158 NEO1Q92859 1461 aa22.95■■□□□ 1.27
SNRNP35-204ENST00000527158 MIER1Q8N108 512 aa22.95■■□□□ 1.26
SNRNP35-204ENST00000527158 DHX29Q7Z478 1369 aaKnown RBP22.93■■□□□ 1.26
SNRNP35-204ENST00000527158 POGZQ7Z3K3 1410 aa22.93■■□□□ 1.26
SNRNP35-204ENST00000527158 HIRIP3Q9BW71 556 aaPredicted RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms