RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 ILDR2Q71H61 639 aa27.7■■■□□ 2.02
CHMP4A-203ENST00000527154 PREX1Q8TCU6 1659 aa27.7■■■□□ 2.02
CHMP4A-203ENST00000527154 C9orf84Q5VXU9 1444 aa27.68■■■□□ 2.02
CHMP4A-203ENST00000527154 SOCS7O14512 581 aa27.67■■■□□ 2.02
CHMP4A-203ENST00000527154 STRCQ7RTU9 1775 aa27.66■■■□□ 2.02
CHMP4A-203ENST00000527154 MLECQ14165 292 aa27.65■■■□□ 2.02
CHMP4A-203ENST00000527154 PLPPR3Q6T4P5 718 aa27.64■■■□□ 2.02
CHMP4A-203ENST00000527154 EEA1Q15075 1411 aa27.62■■■□□ 2.01
CHMP4A-203ENST00000527154 DMRT2Q9Y5R5 561 aa27.62■■■□□ 2.01
CHMP4A-203ENST00000527154 DISP3Q9P2K9 1392 aa27.61■■■□□ 2.01
CHMP4A-203ENST00000527154 CDK13Q14004 1512 aaKnown RBP27.61■■■□□ 2.01
CHMP4A-203ENST00000527154 KDM5CP41229 1560 aa27.57■■■□□ 2
CHMP4A-203ENST00000527154 PTPRTO14522 1441 aa27.57■■■□□ 2
CHMP4A-203ENST00000527154 CEBPAP49715 358 aaPredicted RBP27.56■■■□□ 2
CHMP4A-203ENST00000527154 SETD1BQ9UPS6 1966 aaKnown RBP27.56■■■□□ 2
CHMP4A-203ENST00000527154 UHRF1BP1Q6BDS2 1440 aa27.55■■■□□ 2
CHMP4A-203ENST00000527154 REREQ9P2R6 1566 aa27.55■■■□□ 2
CHMP4A-203ENST00000527154 ZNF518AQ6AHZ1 1483 aa27.54■■■□□ 2
CHMP4A-203ENST00000527154 EFCAB2Q5VUJ9 269 aa27.53■■■□□ 2
CHMP4A-203ENST00000527154 LTBP4Q8N2S1 1624 aa27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 RANGAP1P46060 587 aaPredicted RBP27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 MYO5CQ9NQX4 1742 aa27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 IQSEC2Q5JU85 1478 aa27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 DIP2CQ9Y2E4 1556 aa27.47■■□□□ 1.99
CHMP4A-203ENST00000527154 SPATA31D1Q6ZQQ2 1576 aa27.46■■□□□ 1.99
CHMP4A-203ENST00000527154 AGLP35573 1532 aa27.45■■□□□ 1.98
CHMP4A-203ENST00000527154 MLH3Q9UHC1 1453 aa27.44■■□□□ 1.98
CHMP4A-203ENST00000527154 AFAP1Q8N556 730 aa27.43■■□□□ 1.98
CHMP4A-203ENST00000527154 KIF14Q15058 1648 aa27.41■■□□□ 1.98
CHMP4A-203ENST00000527154 C3P01024 1663 aa27.41■■□□□ 1.98
CHMP4A-203ENST00000527154 FMN1Q68DA7 1419 aa27.41■■□□□ 1.98
CHMP4A-203ENST00000527154 TROQ12816 1431 aaPredicted RBP27.4■■□□□ 1.98
CHMP4A-203ENST00000527154 TRAPPC8Q9Y2L5 1435 aa27.39■■□□□ 1.97
CHMP4A-203ENST00000527154 NCOA1Q15788 1441 aa27.38■■□□□ 1.97
CHMP4A-203ENST00000527154 ABCA6Q8N139 1617 aa27.38■■□□□ 1.97
CHMP4A-203ENST00000527154 CDK11AQ9UQ88 783 aaPredicted RBP27.36■■□□□ 1.97
CHMP4A-203ENST00000527154 ARHGAP5Q13017 1502 aa27.35■■□□□ 1.97
CHMP4A-203ENST00000527154 ARHGAP35Q9NRY4 1499 aa27.32■■□□□ 1.96
CHMP4A-203ENST00000527154 CNTLNQ9NXG0 1405 aa27.31■■□□□ 1.96
CHMP4A-203ENST00000527154 ABCC1P33527 1531 aa27.29■■□□□ 1.96
CHMP4A-203ENST00000527154 CDC42BPBQ9Y5S2 1711 aa27.29■■□□□ 1.96
CHMP4A-203ENST00000527154 NPATQ14207 1427 aa27.27■■□□□ 1.96
CHMP4A-203ENST00000527154 CLIP1P30622 1438 aa27.26■■□□□ 1.95
CHMP4A-203ENST00000527154 KIDINS220Q9ULH0 1771 aa27.23■■□□□ 1.95
CHMP4A-203ENST00000527154 PREX2Q70Z35 1606 aa27.23■■□□□ 1.95
CHMP4A-203ENST00000527154 LRRIQ1Q96JM4 1722 aa27.21■■□□□ 1.95
CHMP4A-203ENST00000527154 MROH2AA6NES4 1674 aa27.21■■□□□ 1.95
CHMP4A-203ENST00000527154 ITSN2Q9NZM3 1697 aa27.21■■□□□ 1.95
CHMP4A-203ENST00000527154 CAMSAP1Q5T5Y3 1602 aa27.19■■□□□ 1.94
CHMP4A-203ENST00000527154 PLA2R1Q13018 1463 aa27.17■■□□□ 1.94
CHMP4A-203ENST00000527154 ESF1Q9H501 851 aaKnown RBP27.16■■□□□ 1.94
CHMP4A-203ENST00000527154 ATP1B4Q9UN42 357 aaPredicted RBP27.16■■□□□ 1.94
CHMP4A-203ENST00000527154 ZMYM3Q14202 1370 aa27.14■■□□□ 1.94
CHMP4A-203ENST00000527154 MYT1LQ9UL68 1186 aa27.14■■□□□ 1.94
CHMP4A-203ENST00000527154 TCOF1Q13428 1488 aaKnown RBP27.13■■□□□ 1.93
CHMP4A-203ENST00000527154 SAMD9LQ8IVG5 1584 aa27.12■■□□□ 1.93
CHMP4A-203ENST00000527154 ZNF335Q9H4Z2 1342 aaPredicted RBP27.11■■□□□ 1.93
CHMP4A-203ENST00000527154 ZNF142P52746 1687 aaPredicted RBP27.11■■□□□ 1.93
CHMP4A-203ENST00000527154 PKD2Q13563 968 aa27.08■■□□□ 1.93
CHMP4A-203ENST00000527154 CCDC18Q5T9S5 1454 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 PLXNC1O60486 1568 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 NCKAP5LQ9HCH0 1330 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 CDC42BPAQ5VT25 1732 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 UBTFP17480 764 aaKnown RBP27.06■■□□□ 1.92
CHMP4A-203ENST00000527154 PTPRKQ15262 1439 aa27.06■■□□□ 1.92
CHMP4A-203ENST00000527154 CASKIN1Q8WXD9 1431 aa27.06■■□□□ 1.92
CHMP4A-203ENST00000527154 MYO3AQ8NEV4 1616 aa27.04■■□□□ 1.92
CHMP4A-203ENST00000527154 UBAP1LF5GYI3 381 aa27.03■■□□□ 1.92
CHMP4A-203ENST00000527154 CEP170BQ9Y4F5 1589 aaPredicted RBP27.02■■□□□ 1.92
CHMP4A-203ENST00000527154 KIAA1107Q9UPP5 1409 aa26.99■■□□□ 1.91
CHMP4A-203ENST00000527154 SYCP2Q9BX26 1530 aa26.99■■□□□ 1.91
CHMP4A-203ENST00000527154 GPATCH8Q9UKJ3 1502 aaKnown RBP26.98■■□□□ 1.91
CHMP4A-203ENST00000527154 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
CHMP4A-203ENST00000527154 ATP7AQ04656 1500 aa26.96■■□□□ 1.91
CHMP4A-203ENST00000527154 SPAG9O60271 1321 aaKnown RBP26.96■■□□□ 1.91
CHMP4A-203ENST00000527154 CLTCQ00610 1675 aaKnown RBP26.95■■□□□ 1.91
CHMP4A-203ENST00000527154 PPP6R1Q9UPN7 881 aa26.95■■□□□ 1.9
CHMP4A-203ENST00000527154 A2MP01023 1474 aa26.94■■□□□ 1.9
CHMP4A-203ENST00000527154 SUPT6HQ7KZ85 1726 aaKnown RBP26.93■■□□□ 1.9
CHMP4A-203ENST00000527154 MED1Q15648 1581 aaPredicted RBP26.9■■□□□ 1.9
CHMP4A-203ENST00000527154 A2ML1A8K2U0 1454 aa26.9■■□□□ 1.9
CHMP4A-203ENST00000527154 PLEKHH2Q8IVE3 1493 aa26.9■■□□□ 1.9
CHMP4A-203ENST00000527154 FYCO1Q9BQS8 1478 aa26.89■■□□□ 1.9
CHMP4A-203ENST00000527154 HNRNPMP52272 730 aaKnown RBP eCLIP26.88■■□□□ 1.89
CHMP4A-203ENST00000527154 DNMT1P26358 1616 aaKnown RBP26.87■■□□□ 1.89
CHMP4A-203ENST00000527154 CPS1P31327 1500 aa26.86■■□□□ 1.89
CHMP4A-203ENST00000527154 EHMT2Q96KQ7 1210 aa26.85■■□□□ 1.89
CHMP4A-203ENST00000527154 NEURL4Q96JN8 1562 aa26.84■■□□□ 1.89
CHMP4A-203ENST00000527154 HSPA1LP34931 641 aa26.84■■□□□ 1.89
CHMP4A-203ENST00000527154 ZNF777Q9ULD5 760 aaPredicted RBP26.84■■□□□ 1.89
CHMP4A-203ENST00000527154 GGT6Q6P531 493 aa26.8■■□□□ 1.88
CHMP4A-203ENST00000527154 SHANK2Q9UPX8 1470 aa26.8■■□□□ 1.88
CHMP4A-203ENST00000527154 ADGBQ8N7X0 1667 aa26.79■■□□□ 1.88
CHMP4A-203ENST00000527154 ALKQ9UM73 1620 aa26.79■■□□□ 1.88
CHMP4A-203ENST00000527154 MBD5Q9P267 1494 aa26.78■■□□□ 1.88
CHMP4A-203ENST00000527154 TOM1O60784 492 aa26.77■■□□□ 1.88
CHMP4A-203ENST00000527154 CFDP1Q9UEE9 299 aaPredicted RBP26.77■■□□□ 1.88
CHMP4A-203ENST00000527154 FAM135AQ9P2D6 1515 aa26.76■■□□□ 1.87
CHMP4A-203ENST00000527154 RTEL1-TNFRSF6BF6WH68 1400 aa26.76■■□□□ 1.87
CHMP4A-203ENST00000527154 POLR1AO95602 1720 aaPredicted RBP26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms