RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 KCNH8Q96L42 1107 aa25.05■■□□□ 1.6
USH1C-205ENST00000527020 ZNF644Q9H582 1327 aaPredicted RBP25.05■■□□□ 1.6
USH1C-205ENST00000527020 CDK11AQ9UQ88 783 aaPredicted RBP25.04■■□□□ 1.6
USH1C-205ENST00000527020 KIF14Q15058 1648 aa25.02■■□□□ 1.6
USH1C-205ENST00000527020 ITSN2Q9NZM3 1697 aa25.02■■□□□ 1.6
USH1C-205ENST00000527020 FBLN2P98095 1184 aa25.02■■□□□ 1.6
USH1C-205ENST00000527020 TRIM52Q96A61 297 aa25.02■■□□□ 1.6
USH1C-205ENST00000527020 CARMIL2Q6F5E8 1435 aa25■■□□□ 1.59
USH1C-205ENST00000527020 JPH4Q96JJ6 628 aa25■■□□□ 1.59
USH1C-205ENST00000527020 MPHOSPH9Q99550 1183 aa25■■□□□ 1.59
USH1C-205ENST00000527020 CAMSAP2Q08AD1 1489 aa24.97■■□□□ 1.59
USH1C-205ENST00000527020 GPATCH8Q9UKJ3 1502 aaKnown RBP24.97■■□□□ 1.59
USH1C-205ENST00000527020 ABCA8O94911 1581 aa24.96■■□□□ 1.59
USH1C-205ENST00000527020 CROCC2H7BZ55 1655 aa24.93■■□□□ 1.58
USH1C-205ENST00000527020 ADGBQ8N7X0 1667 aa24.93■■□□□ 1.58
USH1C-205ENST00000527020 FOXD1Q16676 465 aa24.9■■□□□ 1.58
USH1C-205ENST00000527020 ANKRD30BQ9BXX2 1392 aa24.89■■□□□ 1.58
USH1C-205ENST00000527020 CDC42BPAQ5VT25 1732 aa24.89■■□□□ 1.57
USH1C-205ENST00000527020 CFDP1Q9UEE9 299 aaPredicted RBP24.88■■□□□ 1.57
USH1C-205ENST00000527020 NCOA1Q15788 1441 aa24.86■■□□□ 1.57
USH1C-205ENST00000527020 ATP10BO94823 1461 aa24.85■■□□□ 1.57
USH1C-205ENST00000527020 ADGRL2O95490 1459 aa24.85■■□□□ 1.57
USH1C-205ENST00000527020 RPRD2Q5VT52 1461 aaKnown RBP24.85■■□□□ 1.57
USH1C-205ENST00000527020 ABCC10Q5T3U5 1492 aa24.84■■□□□ 1.57
USH1C-205ENST00000527020 PZPP20742 1482 aa24.83■■□□□ 1.57
USH1C-205ENST00000527020 L3MBTL2Q969R5 705 aa24.83■■□□□ 1.56
USH1C-205ENST00000527020 CCER2I3L3R5 266 aa24.82■■□□□ 1.56
USH1C-205ENST00000527020 TEX14Q8IWB6 1497 aa24.81■■□□□ 1.56
USH1C-205ENST00000527020 ANP32CO43423 234 aa24.8■■□□□ 1.56
USH1C-205ENST00000527020 HSPA5P11021 654 aaKnown RBP24.79■■□□□ 1.56
USH1C-205ENST00000527020 SLC4A1APQ9BWU0 796 aaKnown RBP24.77■■□□□ 1.56
USH1C-205ENST00000527020 ZNF777Q9ULD5 760 aaPredicted RBP24.77■■□□□ 1.56
USH1C-205ENST00000527020 CHD1O14646 1710 aa24.77■■□□□ 1.56
USH1C-205ENST00000527020 PLEKHD1A6NEE1 506 aa24.76■■□□□ 1.55
USH1C-205ENST00000527020 SUPT16HQ9Y5B9 1047 aaKnown RBP24.75■■□□□ 1.55
USH1C-205ENST00000527020 WASHC2AQ641Q2 1341 aa24.74■■□□□ 1.55
USH1C-205ENST00000527020 ANKRD30AQ9BXX3 1397 aa24.72■■□□□ 1.55
USH1C-205ENST00000527020 SHANK2Q9UPX8 1470 aa24.71■■□□□ 1.55
USH1C-205ENST00000527020 EIF4G2P78344 907 aaKnown RBP eCLIP24.71■■□□□ 1.55
USH1C-205ENST00000527020 NBPF8Q3BBV2 869 aa24.71■■□□□ 1.55
USH1C-205ENST00000527020 PTPRGP23470 1445 aa24.69■■□□□ 1.54
USH1C-205ENST00000527020 SHROOM2Q13796 1616 aa24.67■■□□□ 1.54
USH1C-205ENST00000527020 ANKRD50Q9ULJ7 1429 aa24.67■■□□□ 1.54
USH1C-205ENST00000527020 KIAA1107Q9UPP5 1409 aa24.67■■□□□ 1.54
USH1C-205ENST00000527020 C9orf84Q5VXU9 1444 aa24.66■■□□□ 1.54
USH1C-205ENST00000527020 CDC42BPBQ9Y5S2 1711 aa24.65■■□□□ 1.54
USH1C-205ENST00000527020 ARHGEF5Q12774 1597 aa24.64■■□□□ 1.53
USH1C-205ENST00000527020 MBD5Q9P267 1494 aa24.64■■□□□ 1.53
USH1C-205ENST00000527020 POLR1AO95602 1720 aaPredicted RBP24.63■■□□□ 1.53
USH1C-205ENST00000527020 PREX2Q70Z35 1606 aa24.62■■□□□ 1.53
USH1C-205ENST00000527020 SPATA31E1Q6ZUB1 1445 aa24.62■■□□□ 1.53
USH1C-205ENST00000527020 C11orf95C9JLR9 678 aaPredicted RBP24.61■■□□□ 1.53
USH1C-205ENST00000527020 SAMD9LQ8IVG5 1584 aa24.61■■□□□ 1.53
USH1C-205ENST00000527020 CNTLNQ9NXG0 1405 aa24.59■■□□□ 1.53
USH1C-205ENST00000527020 KDM5DQ9BY66 1539 aa24.59■■□□□ 1.53
USH1C-205ENST00000527020 CCDC7Q96M83 1385 aa24.59■■□□□ 1.53
USH1C-205ENST00000527020 PKD2Q13563 968 aa24.58■■□□□ 1.53
USH1C-205ENST00000527020 ERCC6L2Q5T890 1561 aa24.55■■□□□ 1.52
USH1C-205ENST00000527020 HNRNPMP52272 730 aaKnown RBP eCLIP24.54■■□□□ 1.52
USH1C-205ENST00000527020 TTC37Q6PGP7 1564 aa24.52■■□□□ 1.52
USH1C-205ENST00000527020 TSPY4P0CV99 314 aa24.52■■□□□ 1.52
USH1C-205ENST00000527020 TSPY10P0CW01 314 aa24.52■■□□□ 1.52
USH1C-205ENST00000527020 NUP155O75694 1391 aa24.52■■□□□ 1.52
USH1C-205ENST00000527020 KIF15Q9NS87 1388 aa24.52■■□□□ 1.52
USH1C-205ENST00000527020 CCDC141Q6ZP82 1450 aa24.51■■□□□ 1.51
USH1C-205ENST00000527020 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.49■■□□□ 1.51
USH1C-205ENST00000527020 ABCC2Q92887 1545 aa24.48■■□□□ 1.51
USH1C-205ENST00000527020 KIF7Q2M1P5 1343 aa24.47■■□□□ 1.51
USH1C-205ENST00000527020 BCORL1Q5H9F3 1711 aa24.45■■□□□ 1.51
USH1C-205ENST00000527020 SYCP2Q9BX26 1530 aa24.45■■□□□ 1.5
USH1C-205ENST00000527020 KDM5CP41229 1560 aa24.44■■□□□ 1.5
USH1C-205ENST00000527020 MAST1Q9Y2H9 1570 aa24.44■■□□□ 1.5
USH1C-205ENST00000527020 MYO5CQ9NQX4 1742 aa24.44■■□□□ 1.5
USH1C-205ENST00000527020 UHRF1BP1Q6BDS2 1440 aa24.44■■□□□ 1.5
USH1C-205ENST00000527020 ARHGEF12Q9NZN5 1544 aa24.42■■□□□ 1.5
USH1C-205ENST00000527020 ARHGAP5Q13017 1502 aa24.42■■□□□ 1.5
USH1C-205ENST00000527020 RSPH4AQ5TD94 716 aa24.4■■□□□ 1.5
USH1C-205ENST00000527020 PRKRIP1Q9H875 184 aaPredicted RBP24.4■■□□□ 1.5
USH1C-205ENST00000527020 CCDC184Q52MB2 194 aa24.4■■□□□ 1.5
USH1C-205ENST00000527020 CLASP1Q7Z460 1538 aa24.4■■□□□ 1.5
USH1C-205ENST00000527020 FAM135AQ9P2D6 1515 aa24.4■■□□□ 1.5
USH1C-205ENST00000527020 USP47Q96K76 1375 aa24.4■■□□□ 1.5
USH1C-205ENST00000527020 FKBP8Q14318 412 aa24.39■■□□□ 1.5
USH1C-205ENST00000527020 RALGAPBQ86X10 1494 aa24.39■■□□□ 1.49
USH1C-205ENST00000527020 UNC13BO14795 1591 aa24.37■■□□□ 1.49
USH1C-205ENST00000527020 ZNF326Q5BKZ1 582 aaKnown RBP24.36■■□□□ 1.49
USH1C-205ENST00000527020 ZCCHC11Q5TAX3 1644 aaKnown RBP24.35■■□□□ 1.49
USH1C-205ENST00000527020 PLXNC1O60486 1568 aa24.35■■□□□ 1.49
USH1C-205ENST00000527020 HNRNPUQ00839 825 aaKnown RBP eCLIP24.35■■□□□ 1.49
USH1C-205ENST00000527020 BCANQ96GW7 911 aa24.31■■□□□ 1.48
USH1C-205ENST00000527020 PLEKHH2Q8IVE3 1493 aa24.3■■□□□ 1.48
USH1C-205ENST00000527020 DHX29Q7Z478 1369 aaKnown RBP24.3■■□□□ 1.48
USH1C-205ENST00000527020 UHRF1BP1LA0JNW5 1464 aa24.3■■□□□ 1.48
USH1C-205ENST00000527020 IQGAP3Q86VI3 1631 aa24.28■■□□□ 1.48
USH1C-205ENST00000527020 NEFLP07196 543 aa24.26■■□□□ 1.47
USH1C-205ENST00000527020 PLCH2O75038 1416 aa24.25■■□□□ 1.47
USH1C-205ENST00000527020 PLA2R1Q13018 1463 aa24.25■■□□□ 1.47
USH1C-205ENST00000527020 ARID4BQ4LE39 1312 aaPredicted RBP24.24■■□□□ 1.47
USH1C-205ENST00000527020 MRS2Q9HD23 443 aa24.23■■□□□ 1.47
USH1C-205ENST00000527020 DUOX2Q9NRD8 1548 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms